vOTU vOTU-026313

vOTU: vOTU-026313

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-026313
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00007 → vOTU-026313
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1920875
Biosample ID	N/A
Genome length (bp)	35,438 bps
CheckV completeness	61.47% (Medium-quality)
CDS count	68
CDS density	82.84%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	240	Host agreement	97.92
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 61.47)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-1920875_1	UniRef90_A0A2A7AM70	150.0	2.18603e-43	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-1920875_1	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1920875_1	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-1920875_5	phrog_8	53.6	0.0000000000000052	transcriptional regulator	transcription regulation
UniRef90	UHGV-1920875_5	UniRef90_A0A1C6D4U5	92.0	8.54e-22	Helix-turn-helix domain	N/A
eggNOG-mapper	UHGV-1920875_5	693746.OBV_43290	55.1	0.0000000555	addiction module antidote protein HigA	N/A
Pfam	UHGV-1920875_5	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-1920875_5	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-1920875_5	PF01381,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1920875_6	phrog_1468	40.1	0.000000000013	transcriptional repressor	transcription regulation
UniRef90	UHGV-1920875_6	UniRef90_A0A8J6LUU7	55.5	0.0000000183	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1920875_6	428125.CLOLEP_02737	47.4	0.00000475	N/A	N/A
structural_annotation	UHGV-1920875_6	TIGR03070	N/A	N/A	N/A	N/A
PHROG	UHGV-1920875_7	phrog_4652	91.0	2.9e-27	N/A	unknown function
UniRef90	UHGV-1920875_7	UniRef90_A0A0P0DZ87	125.0	3.73e-32	Cubilin	N/A
eggNOG-mapper	UHGV-1920875_7	397290.C810_01459	162.0	0	N/A	N/A
structural_annotation	UHGV-1920875_7	TIGR02582,COG1604	N/A	N/A	N/A	N/A
PHROG	UHGV-1920875_8	phrog_15946	89.2	5.3e-26	N/A	unknown function
eggNOG-mapper	UHGV-1920875_8	1041147.AUFB01000014_gene330	59.7	0.00000000624	N/A	N/A
structural_annotation	UHGV-1920875_9	PF10922	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1920875_11	TIGR03826	N/A	N/A	N/A	N/A
Pfam	UHGV-1920875_13	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1920875_13	PF13443,TIGR02684,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1920875_14	PF14143	N/A	N/A	N/A	N/A
COG	UHGV-1920875_15	COG1327	N/A	N/A	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	N/A
structural_annotation	UHGV-1920875_15	PF04606,NF007241	N/A	N/A	N/A	N/A
PHROG	UHGV-1920875_17	phrog_155	147.7	7.42688e-44	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1920875_17	UniRef90_E2ZNS9	272.0	0	Erf family protein	N/A
eggNOG-mapper	UHGV-1920875_17	748224.HMPREF9436_03360	272.0	0	ERF superfamily	N/A
Pfam	UHGV-1920875_17	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-1920875_17	PF04404,COG4712	N/A	N/A	N/A	N/A
KOfam	UHGV-1920875_18	K03111	117.1	2.6e-34	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1920875_18	phrog_44	127.2	1.4e-37	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1920875_18	UniRef90_A0A6N7TNV3	149.0	1.13505e-43	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1920875_18	748224.HMPREF9436_03359	145.0	1.25977e-42	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1920875_18	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1920875_18	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1920875_18	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1920875_18	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1920875_18	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1920875_19	phrog_28936	127.0	1.3e-37	N/A	unknown function
eggNOG-mapper	UHGV-1920875_19	573061.Clocel_3563	134.0	4.08e-37	N/A	N/A
structural_annotation	UHGV-1920875_19	PF11645,MF_01490,NF040854	N/A	N/A	N/A	N/A
KOfam	UHGV-1920875_20	K00558	165.7	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1920875_20	phrog_16427	239.1	0	DNA methyltransferase	other
UniRef90	UHGV-1920875_20	UniRef90_D4JYK0	870.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1920875_20	718252.FP2_16350	870.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1920875_20	oMTase_00004	233.1	0	orphan methyltransferase	RM
Pfam	UHGV-1920875_20	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-1920875_20	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-1920875_20	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1920875_20	PF00145,TIGR00675	N/A	N/A	N/A	N/A
PHROG	UHGV-1920875_23	phrog_843	63.9	1.9e-18	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1920875_23	UniRef90_UPI001159D907	117.0	2.88e-30	Holliday junction resolvase RecU	N/A
eggNOG-mapper	UHGV-1920875_23	929506.CbC4_1203	110.0	3.09e-28	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	N/A
structural_annotation	UHGV-1920875_23	PF03838,MF_00130,NF002581,COG3331	N/A	N/A	N/A	N/A
KOfam	UHGV-1920875_27	K00390	111.8	5.4e-33	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-1920875_27	phrog_424	122.1	4.7e-36	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1920875_27	UniRef90_A0A1Y4LU27	303.0	0	Adenylyl-sulfate reductase	N/A
eggNOG-mapper	UHGV-1920875_27	1408437.JNJN01000032_gene2312	283.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-1920875_27	BrxP_00001	78.7	1.3e-24	BrxP	BREX
Pfam	UHGV-1920875_27	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1920875_27	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1920875_27	PF01507,MF_00064,TIGR02039,COG0175	N/A	N/A	N/A	N/A
UniRef90	UHGV-1920875_28	UniRef90_UPI0006DCB293	79.7	1.84e-17	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-1920875_28	411490.ANACAC_02386	74.7	0.00000000000000546	Phosphoadenosine phosphosulfate reductase	N/A
COG	UHGV-1920875_28	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1920875_29	PF09723	N/A	N/A	N/A	N/A
Pfam	UHGV-1920875_31	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-1920875_32	PF16677	N/A	N/A	N/A	N/A
UniRef90	UHGV-1920875_35	UniRef90_UPI0012DD33A2	305.0	0	restriction endonuclease subunit M	N/A
eggNOG-mapper	UHGV-1920875_35	596329.HMPREF0631_0252	211.0	0	restriction endonuclease	N/A
PADLOC	UHGV-1920875_35	MTase_II_00176	163.6	0	Type II methyltransferase	RM
COG	UHGV-1920875_35	COG1002	N/A	N/A	Type II restriction/modification system, endonuclease and methylase domains	N/A
structural_annotation	UHGV-1920875_42	NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-1920875_46	phrog_599	48.7	0.00000000000017	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1920875_46	UniRef90_S0JRD7	87.0	7.67e-21	Lar family restriction alleviation protein	N/A
eggNOG-mapper	UHGV-1920875_46	1235790.C805_00069	87.0	1.29e-21	Restriction alleviation protein Lar	N/A
Pfam	UHGV-1920875_46	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-1920875_46	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
structural_annotation	UHGV-1920875_46	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-1920875_47	phrog_678	44.0	0.0000000000042	replication initiation O-like	DNA, RNA and nucleotide metabolism
Pfam	UHGV-1920875_47	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-1920875_47	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-1920875_48	K02314	213.5	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-1920875_48	phrog_19	225.1	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1920875_48	UniRef90_A0A564SBR1	434.0	0	Replicative DNA helicase	N/A
eggNOG-mapper	UHGV-1920875_48	1203606.HMPREF1526_01325	168.0	7.00649e-45	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-1920875_48	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-1920875_48	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-1920875_48	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1920875_55	PF09624,PF14263,MF_00791,NF038353,TIGR02588,COG4885	N/A	N/A	N/A	N/A
KOfam	UHGV-1920875_56	K07741	68.6	2.1e-19	antB; anti-repressor protein	N/A
PHROG	UHGV-1920875_56	phrog_130	233.2	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1920875_56	UniRef90_A0A8D4D1X2	263.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-1920875_56	1289596.M1PKL6_9CAUD	246.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-1920875_56	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-1920875_56	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
structural_annotation	UHGV-1920875_56	PF02498,PF03374,TIGR02681,COG3645,COG3561	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1920875_57	PF19807,NF041793,COG4877	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1920875_59	PF20075	N/A	N/A	N/A	N/A
KOfam	UHGV-1920875_60	K14060	146.7	1.90577e-43	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-1920875_60	phrog_125	174.8	0	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1920875_60	UniRef90_A0A3E2UAG1	232.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-1920875_60	1280664.AUIX01000018_gene2067	214.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1920875_60	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-1920875_60	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1920875_60	PF00239,PF02796,NF009949,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-1920875_61	K14415	326.1	0	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	N/A
PHROG	UHGV-1920875_61	phrog_1075	438.1	0	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1920875_61	UniRef90_UPI00067F3ABF	476.0	0	RNA-splicing ligase RtcB	N/A
eggNOG-mapper	UHGV-1920875_61	1211844.CBLM010000044_gene358	470.0	0	tRNA-splicing ligase RtcB	N/A
Pfam	UHGV-1920875_61	PF01139	N/A	N/A	tRNA-splicing ligase RtcB	RtcB
COG	UHGV-1920875_61	COG1690	N/A	N/A	RNA-splicing ligase RtcB, repairs tRNA damage	N/A
structural_annotation	UHGV-1920875_61	PF01139,MF_03144,NF007153,COG1690	N/A	N/A	N/A	N/A
PHROG	UHGV-1920875_63	phrog_38	156.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-1920875_63	UniRef90_A0A3D4KYF7	952.0	0	DOD-type homing endonuclease domain-containing protein	N/A
eggNOG-mapper	UHGV-1920875_63	1232453.BAIF02000058_gene1623	394.0	0	TIGRFAM Phage	N/A
Pfam	UHGV-1920875_63	PF14528	N/A	N/A	LAGLIDADG-like domain	LAGLIDADG_3
COG	UHGV-1920875_63	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1920875_63	PF05203,PF17289,MF_04147,MF_01420,NF033889,NF007072,COG5362,COG1372	N/A	N/A	N/A	N/A
PHROG	UHGV-1920875_66	phrog_64	148.6	3.36312e-44	portal protein	head and packaging
UniRef90	UHGV-1920875_66	UniRef90_A0A371ILT4	330.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1920875_66	1121866.AUGK01000003_gene1429	276.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1920875_66	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1920875_66	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1920875	Yes	35,438	48	61	1
UHGV-1635971	No	14,463	47	25	1
UHGV-2205458	No	10,691	47	19	1