vOTU vOTU-027117

vOTU: vOTU-027117

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-027117
Number of genomes	3
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00316 → vGENUS-02897 → vOTU-027117
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-2188808
Biosample ID	N/A
Genome length (bp)	34,089 bps
CheckV completeness	88.46% (Medium-quality)
CDS count	49
CDS density	88.89%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis	Total connections	47	Host agreement	93.62
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis	Total connections	683	Host agreement	98.39

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 88.46)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-2188808_1	411467.BACCAP_03060	80.5	8.4e-18	BRO family, N-terminal domain	N/A
COG	UHGV-2188808_1	COG3617	N/A	N/A	Prophage antirepressor	N/A
UniRef90	UHGV-2188808_3	UniRef90_A0A0D8IVG0	168.0	0	Thiamine transporter	N/A
eggNOG-mapper	UHGV-2188808_3	1226322.HMPREF1545_02574	201.0	0	N/A	N/A
AcrCatalog	UHGV-2188808_3	cluster_10190	99.0	6.05e-30	NA	N/A
Pfam	UHGV-2188808_3	PF19517	N/A	N/A	N/A	DUF6050
eggNOG-mapper	UHGV-2188808_5	411471.SUBVAR_06995	81.3	0.00000000000000544	N/A	N/A
COG	UHGV-2188808_5	COG2369	N/A	N/A	N/A	N/A
KOfam	UHGV-2188808_8	K14059	190.7	0	int; integrase	N/A
PHROG	UHGV-2188808_8	phrog_1	196.8	0	integrase	integration and excision
UniRef90	UHGV-2188808_8	UniRef90_UPI00195B6EEA	455.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-2188808_8	1235797.C816_00779	175.0	0	Phage integrase family	N/A
Pfam	UHGV-2188808_8	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-2188808_8	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-2188808_8	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-2188808_8	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-2188808_9	K19370	42.7	0.0000000000051	DNAJC22; DnaJ homolog subfamily C member 22	N/A
PHROG	UHGV-2188808_9	phrog_10292	60.6	1.6e-18	N/A	unknown function
UniRef90	UHGV-2188808_9	UniRef90_UPI001916763D	121.0	1.4e-32	TM2 domain-containing protein	N/A
eggNOG-mapper	UHGV-2188808_9	665956.HMPREF1032_00562	108.0	3.78e-28	TM2 domain	N/A
Pfam	UHGV-2188808_9	PF13248	N/A	N/A	zinc-ribbon domain	zf-ribbon_3
Pfam	UHGV-2188808_9	PF05154	N/A	N/A	TM2 domain	TM2
COG	UHGV-2188808_9	COG2314	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2188808_9	PF05154,PF12773,MF_00788,NF003161	N/A	N/A	N/A	N/A
PHROG	UHGV-2188808_10	phrog_87	46.6	0.0000000000004	metallo-protease	other
UniRef90	UHGV-2188808_10	UniRef90_UPI001C3AA0FC	132.0	8.59e-37	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-2188808_10	663278.Ethha_2376	91.7	8.82e-22	N/A	N/A
structural_annotation	UHGV-2188808_10	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-2188808_11	K22300	54.4	0.0000000000000026	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-2188808_11	phrog_2967	64.4	1.5e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-2188808_11	UniRef90_A0A412UNH6	81.3	1.88e-17	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-2188808_11	911104.AEKT01000001_gene15	68.9	0.000000000000204	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-2188808_11	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2188808_11	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-2188808_11	PF01381,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-2188808_12	K22300	40.5	0.000000000045	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-2188808_12	phrog_2439	42.6	0.0000000000058	transcriptional regulator	transcription regulation
UniRef90	UHGV-2188808_12	UniRef90_A0A6N2UL50	97.4	5.12e-25	Helix-turn-helix	N/A
eggNOG-mapper	UHGV-2188808_12	1504823.CCMM01000008_gene1079	63.5	0.00000000000149	sequence-specific DNA binding	N/A
Pfam	UHGV-2188808_12	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2188808_12	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2188808_12	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2188808_15	PF00227,MF_02113_A,TIGR03634,COG0638	N/A	N/A	N/A	N/A
PHROG	UHGV-2188808_16	phrog_4583	44.1	0.0000000000027	transcriptional repressor	transcription regulation
UniRef90	UHGV-2188808_16	UniRef90_UPI000A0213FB	87.0	5.89e-21	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-2188808_16	1680.BADO_1596	47.0	0.00000486	BetR domain	N/A
Pfam	UHGV-2188808_16	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-2188808_16	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-2188808_17	UniRef90_A0A367GHD7	155.0	0	HTH_17 domain-containing protein	N/A
Pfam	UHGV-2188808_17	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
structural_annotation	UHGV-2188808_19	PF12957	N/A	N/A	N/A	N/A
PHROG	UHGV-2188808_21	phrog_1733	62.7	2.5e-18	N/A	unknown function
UniRef90	UHGV-2188808_21	UniRef90_UPI00196846D9	204.0	0	cell envelope integrity protein TolA	N/A
eggNOG-mapper	UHGV-2188808_21	665956.HMPREF1032_03597	211.0	0	DNA binding	N/A
COG	UHGV-2188808_21	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-2188808_21	PF03677	N/A	N/A	N/A	N/A
KOfam	UHGV-2188808_22	K03546	49.1	0.000000000000052	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-2188808_22	phrog_1499	460.2	0	N/A	unknown function
UniRef90	UHGV-2188808_22	UniRef90_A0A367GHQ5	815.0	0	Chromosome segregation protein SMC	N/A
eggNOG-mapper	UHGV-2188808_22	1235798.C817_04766	510.0	0	AAA ATPase domain	N/A
Pfam	UHGV-2188808_22	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-2188808_22	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-2188808_22	PF11398,MF_00365,TIGR00634,COG0497	N/A	N/A	N/A	N/A
PHROG	UHGV-2188808_23	phrog_124	228.4	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2188808_23	UniRef90_UPI00122C2B12	528.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-2188808_23	1273103.NM10_06861	364.0	0	AAA domain	N/A
Pfam	UHGV-2188808_23	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-2188808_23	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-2188808_24	phrog_2698	189.1	0	N/A	unknown function
UniRef90	UHGV-2188808_24	UniRef90_A0A367GFE7	341.0	0	N/A	N/A
eggNOG-mapper	UHGV-2188808_24	294382.Q5YA95_9CAUD	139.0	2.1e-39	N/A	N/A
structural_annotation	UHGV-2188808_24	PF05037	N/A	N/A	N/A	N/A
KOfam	UHGV-2188808_25	K17677	346.8	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-2188808_25	phrog_16	270.1	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2188808_25	UniRef90_A0A367GH68	1085.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-2188808_25	610130.Closa_1369	759.0	0	DEAD-like helicases superfamily	N/A
PADLOC	UHGV-2188808_25	mREase_IV_00005	137.3	1.2e-40	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-2188808_25	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-2188808_25	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-2188808_25	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-2188808_25	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
KOfam	UHGV-2188808_26	K07505	369.0	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-2188808_26	phrog_2597	1082.9	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2188808_26	UniRef90_A0A367GFF7	1525.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-2188808_26	999413.HMPREF1094_00232	869.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-2188808_26	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-2188808_26	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-2188808_26	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-2188808_26	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
KOfam	UHGV-2188808_27	K01160	41.9	0.000000000023	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-2188808_27	phrog_140	90.9	1.5e-26	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2188808_27	UniRef90_A0A367GHC7	286.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-2188808_27	394503.Ccel_3302	157.0	0	endodeoxyribonuclease RusA	N/A
Pfam	UHGV-2188808_27	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-2188808_27	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-2188808_27	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-2188808_32	phrog_36	79.0	6.1e-23	transcriptional regulator	transcription regulation
UniRef90	UHGV-2188808_32	UniRef90_A0A353BRJ1	95.5	2.65e-22	Sigma70_r4 domain-containing protein	N/A
eggNOG-mapper	UHGV-2188808_32	411471.SUBVAR_05843	138.0	7.66e-40	N/A	N/A
structural_annotation	UHGV-2188808_32	PF07374,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-2188808_33	phrog_1281	113.4	1.2e-33	N/A	unknown function
UniRef90	UHGV-2188808_33	UniRef90_A0A2V2GNZ1	150.0	8.40779e-44	N/A	N/A
eggNOG-mapper	UHGV-2188808_33	1127692.HMPREF9075_01262	97.4	8.2e-24	N/A	N/A
Pfam	UHGV-2188808_33	PF13274	N/A	N/A	Antitoxin SocA-like, Panacea domain	SocA_Panacea
COG	UHGV-2188808_33	COG3600	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2188808_33	PF13274,COG3600	N/A	N/A	N/A	N/A
PHROG	UHGV-2188808_34	phrog_5763	78.9	5.1e-23	N/A	unknown function
eggNOG-mapper	UHGV-2188808_34	1345592.CBOM010000021_gene1331	73.6	0.00000000000183	N/A	N/A
PHROG	UHGV-2188808_35	phrog_606	89.5	3.4e-26	terminase small subunit	head and packaging
UniRef90	UHGV-2188808_35	UniRef90_UPI00195648BB	179.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-2188808_35	397290.C810_05185	159.0	0	DNA-packaging protein gp3	N/A
Pfam	UHGV-2188808_35	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-2188808_35	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-2188808_36	K06909	132.6	3.6e-39	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-2188808_36	phrog_2	158.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-2188808_36	UniRef90_A0A367GH60	872.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-2188808_36	1120746.CCNL01000014_gene2093	546.0	0	DNA packaging	N/A
Pfam	UHGV-2188808_36	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-2188808_36	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-2188808_36	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-2188808_36	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-2188808_36	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-2188808_37	phrog_533	361.6	0	portal protein	head and packaging
UniRef90	UHGV-2188808_37	UniRef90_A0A367GFE3	913.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-2188808_37	663278.Ethha_0090	568.0	0	N/A	N/A
Pfam	UHGV-2188808_37	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-2188808_37	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-2188808_38	phrog_581	337.6	0	minor head protein	head and packaging
UniRef90	UHGV-2188808_38	UniRef90_A0A1C5NZK4	563.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-2188808_38	748224.HMPREF9436_03339	447.0	0	N/A	N/A
Pfam	UHGV-2188808_38	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-2188808_38	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2188808_38	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-2188808_40	phrog_194	60.4	2.1e-17	head scaffolding protein	head and packaging
UniRef90	UHGV-2188808_40	UniRef90_UPI00195B7610	165.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-2188808_40	663278.Ethha_0093	163.0	0	N/A	N/A
Pfam	UHGV-2188808_40	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-2188808_40	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-2188808_41	phrog_10	180.1	0	major head protein	head and packaging
UniRef90	UHGV-2188808_41	UniRef90_A0A367GHJ2	761.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-2188808_41	1120998.AUFC01000030_gene2236	526.0	0	Phage capsid family	N/A
Pfam	UHGV-2188808_41	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-2188808_41	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-2188808_41	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-2188808_41	PF05065,PF13620,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-2188808_42	phrog_541	56.7	3.8e-16	head-tail adaptor	connector
eggNOG-mapper	UHGV-2188808_42	663278.Ethha_0495	76.3	5.21e-16	N/A	N/A
eggNOG-mapper	UHGV-2188808_43	411471.SUBVAR_06991	57.4	0.00000000347	N/A	N/A
Pfam	UHGV-2188808_43	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-2188808_43	PF20536	N/A	N/A	N/A	N/A
PHROG	UHGV-2188808_44	phrog_556	96.7	1.3e-28	minor head protein	head and packaging
UniRef90	UHGV-2188808_44	UniRef90_UPI001958E7C1	230.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-2188808_44	665956.HMPREF1032_03062	177.0	0	Minor capsid protein	N/A
Pfam	UHGV-2188808_44	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-2188808_44	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-2188808_45	phrog_3266	75.6	5.8e-22	tail completion	connector
eggNOG-mapper	UHGV-2188808_45	663278.Ethha_0492	60.1	0.00000000141	N/A	N/A
structural_annotation	UHGV-2188808_45	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-2188808_46	phrog_3099	67.9	1.8e-19	N/A	unknown function
eggNOG-mapper	UHGV-2188808_46	665956.HMPREF1032_03060	247.0	0	N/A	N/A
structural_annotation	UHGV-2188808_46	PF10772,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-2188808_47	phrog_11299	86.5	1.3e-25	N/A	unknown function
eggNOG-mapper	UHGV-2188808_47	665956.HMPREF1032_03059	125.0	4.41e-35	N/A	N/A
structural_annotation	UHGV-2188808_47	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-2188808_48	phrog_706	97.7	1.1e-28	N/A	unknown function
UniRef90	UHGV-2188808_48	UniRef90_UPI0013141117	379.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-2188808_48	665956.HMPREF1032_03058	238.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-2188808_48	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-2188808_48	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-2188808_49	phrog_1535	74.8	8.2e-30	tail length tape measure protein	tail
eggNOG-mapper	UHGV-2188808_49	411471.SUBVAR_06934	129.0	3.71e-29	tape measure	N/A
COG	UHGV-2188808_49	COG5412	N/A	N/A	Phage-related protein	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-2188808	Yes	34,089	58	88	1
UHGV-2085803	No	23,672	56	65	1
UHGV-2168657	No	15,211	56	30	1