vOTU vOTU-027338

vOTU: vOTU-027338

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-027338
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-170 → CAG-170 sp000436735
Taxonomy (UHGV)	vFAM-00004 → vOTU-027338
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → ER4 → ER4 sp000765235
Host range breadth	Species
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0148691
Biosample ID	N/A
Genome length (bp)	22,716 bps
CheckV completeness	56.67% (Medium-quality)
CDS count	34
CDS density	94.41%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → ER4 → ER4 sp000765235	Total connections	2	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-170 → CAG-170 sp000436735	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 56.67)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0148691_1	1378168.N510_03079	85.9	2.55e-18	N/A	N/A
PHROG	UHGV-0148691_3	phrog_38679	55.0	0.0000000000000014	N/A	unknown function
KOfam	UHGV-0148691_4	K01447	78.9	8.3e-23	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0148691_4	phrog_1794	167.4	0	amidase	lysis
UniRef90	UHGV-0148691_4	UniRef90_F3AKX8	201.0	0	N-acetylmuramoyl-L-alanine amidase domain-containing protein	N/A
eggNOG-mapper	UHGV-0148691_4	658088.HMPREF0987_01102	201.0	0	Ami_2	N/A
Pfam	UHGV-0148691_4	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0148691_4	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
Pfam	UHGV-0148691_4	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
COG	UHGV-0148691_4	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0148691_4	PF01510,PF18342,MF_04111,NF008758,NF040670,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-0148691_5	phrog_1129	68.0	1e-19	holin	lysis
UniRef90	UHGV-0148691_5	UniRef90_A0A1M5CY75	127.0	9.83e-37	Phage holin family Hol44, holin superfamily V	N/A
eggNOG-mapper	UHGV-0148691_5	411473.RUMCAL_01944	115.0	1.24e-32	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0148691_5	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0148691_5	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0148691_6	phrog_937	45.0	0.0000000000023	hemolysin	other
eggNOG-mapper	UHGV-0148691_6	1519439.JPJG01000023_gene533	55.8	0.00000000679	N/A	N/A
PHROG	UHGV-0148691_7	phrog_372	287.8	0	tail protein	tail
UniRef90	UHGV-0148691_7	UniRef90_A0A3E3E6C0	230.0	0	Pilus assembly protein	N/A
eggNOG-mapper	UHGV-0148691_7	556261.HMPREF0240_01282	198.0	0	N/A	N/A
Pfam	UHGV-0148691_7	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-0148691_7	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0148691_7	PF05895,MF_04116,NF010681,COG3291	N/A	N/A	N/A	N/A
PHROG	UHGV-0148691_8	phrog_18110	77.0	1.7e-22	N/A	unknown function
UniRef90	UHGV-0148691_8	UniRef90_A0A7V8A6H9	163.0	2.68e-40	PblB	N/A
eggNOG-mapper	UHGV-0148691_8	1235796.C815_00906	120.0	6.51e-26	N/A	N/A
structural_annotation	UHGV-0148691_8	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0148691_9	phrog_1194	69.7	3.6e-20	N/A	unknown function
PHROG	UHGV-0148691_10	phrog_1535	150.4	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0148691_10	1235797.C816_04182	147.0	1.48e-33	SLT domain	N/A
COG	UHGV-0148691_10	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0148691_11	phrog_706	126.9	1.4e-37	N/A	unknown function
UniRef90	UHGV-0148691_11	UniRef90_UPI00067E77F7	197.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0148691_11	469596.HMPREF9488_01327	186.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0148691_11	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0148691_11	PF06854	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0148691_12	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0148691_13	phrog_3099	149.8	1.4013e-44	N/A	unknown function
eggNOG-mapper	UHGV-0148691_13	469596.HMPREF9488_01325	171.0	0	N/A	N/A
structural_annotation	UHGV-0148691_13	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0148691_14	phrog_3266	50.6	0.000000000000028	tail completion	connector
eggNOG-mapper	UHGV-0148691_14	693746.OBV_18140	164.0	0	N/A	N/A
structural_annotation	UHGV-0148691_14	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0148691_15	phrog_556	65.5	8.1e-19	minor head protein	head and packaging
UniRef90	UHGV-0148691_15	UniRef90_UPI0015913248	79.0	2.78e-16	minor capsid protein	N/A
eggNOG-mapper	UHGV-0148691_15	1449050.JNLE01000003_gene3886	80.5	2.02e-17	N/A	N/A
Pfam	UHGV-0148691_15	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0148691_15	PF11114	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0148691_16	PF20536,MF_01370,TIGR02126	N/A	N/A	N/A	N/A
PHROG	UHGV-0148691_17	phrog_541	59.4	6.5e-17	head-tail adaptor	connector
eggNOG-mapper	UHGV-0148691_17	693746.OBV_18110	125.0	9.24e-36	N/A	N/A
PHROG	UHGV-0148691_19	phrog_422	244.6	0	major head protein	head and packaging
UniRef90	UHGV-0148691_19	UniRef90_W0U896	381.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0148691_19	693746.OBV_18090	411.0	0	N/A	N/A
structural_annotation	UHGV-0148691_19	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0148691_20	phrog_194	81.5	1.4e-23	head scaffolding protein	head and packaging
UniRef90	UHGV-0148691_20	UniRef90_UPI00164D9F94	179.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0148691_20	693746.OBV_18080	152.0	3.08286e-44	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0148691_20	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0148691_20	PF06810	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0148691_21	663278.Ethha_0092	70.1	0.00000000000000334	N/A	N/A
PHROG	UHGV-0148691_22	phrog_581	236.8	0	minor head protein	head and packaging
UniRef90	UHGV-0148691_22	UniRef90_A0A4R1QTM7	504.0	0	Minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0148691_22	693746.OBV_18050	484.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0148691_22	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0148691_22	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0148691_22	PF06152,PF12636	N/A	N/A	N/A	N/A
PHROG	UHGV-0148691_23	phrog_353	80.1	1.7e-23	toxin	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0148691_23	UniRef90_UPI001C11D2DB	119.0	4.33e-34	type II toxin-antitoxin system HicA family toxin	N/A
eggNOG-mapper	UHGV-0148691_23	888060.HMPREF9081_0962	111.0	1.23e-31	HicA toxin of bacterial toxin-antitoxin,	N/A
Pfam	UHGV-0148691_23	PF07927	N/A	N/A	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
COG	UHGV-0148691_23	COG1724	N/A	N/A	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	N/A
structural_annotation	UHGV-0148691_23	PF07927,COG1724	N/A	N/A	N/A	N/A
KOfam	UHGV-0148691_24	K18843	60.5	3.8e-17	hicB; antitoxin HicB	N/A
PHROG	UHGV-0148691_24	phrog_497	85.2	1.2e-24	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0148691_24	UniRef90_UPI001C0F3D37	191.0	0	type II toxin-antitoxin system HicB family antitoxin	N/A
eggNOG-mapper	UHGV-0148691_24	1120973.AQXL01000090_gene2616	175.0	0	HicB_like antitoxin of bacterial toxin-antitoxin system	N/A
Pfam	UHGV-0148691_24	PF15919	N/A	N/A	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
COG	UHGV-0148691_24	COG1598	N/A	N/A	Antitoxin component HicB of the HicAB toxin-antitoxin system	N/A
structural_annotation	UHGV-0148691_24	PF15919,COG1598	N/A	N/A	N/A	N/A
PHROG	UHGV-0148691_25	phrog_533	178.9	0	portal protein	head and packaging
UniRef90	UHGV-0148691_25	UniRef90_UPI000680A1DB	561.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0148691_25	693746.OBV_18040	393.0	0	N/A	N/A
structural_annotation	UHGV-0148691_25	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0148691_27	K06909	383.9	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0148691_27	phrog_3717	152.0	2.8026e-45	terminase large subunit	head and packaging
UniRef90	UHGV-0148691_27	UniRef90_UPI0009E54162	683.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0148691_27	411471.SUBVAR_06507	560.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0148691_27	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0148691_27	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0148691_27	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0148691_27	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0148691_27	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0148691_28	phrog_2412	83.2	3.5e-24	N/A	unknown function
eggNOG-mapper	UHGV-0148691_28	742738.HMPREF9460_02504	147.0	2.24208e-44	N/A	N/A
KOfam	UHGV-0148691_29	K07741	62.1	2e-17	antB; anti-repressor protein	N/A
PHROG	UHGV-0148691_29	phrog_130	218.2	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0148691_29	UniRef90_A0A396LJD2	291.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-0148691_29	445971.ANASTE_00714	236.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0148691_29	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0148691_29	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0148691_29	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0148691_29	PF02498,PF03374,TIGR02681,COG3617	N/A	N/A	N/A	N/A
PHROG	UHGV-0148691_30	phrog_248	40.9	0.000000000043	transcriptional activator	transcription regulation
UniRef90	UHGV-0148691_30	UniRef90_UPI001D0837DD	131.0	1.61e-36	N/A	N/A
eggNOG-mapper	UHGV-0148691_30	428125.CLOLEP_01806	100.0	4.38e-25	N/A	N/A
structural_annotation	UHGV-0148691_30	PF07374,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0148691_32	phrog_5781	74.0	2.1e-21	N/A	unknown function
UniRef90	UHGV-0148691_32	UniRef90_A0A2V2FSM6	110.0	2.82e-29	Nucleoside 2-deoxyribosyltransferase	N/A
eggNOG-mapper	UHGV-0148691_32	667121.ET1_08_00770	93.2	1.59e-23	N/A	N/A
Pfam	UHGV-0148691_32	PF14359	N/A	N/A	N/A	DUF4406
COG	UHGV-0148691_32	COG3613	N/A	N/A	Nucleoside 2-deoxyribosyltransferase	N/A
structural_annotation	UHGV-0148691_32	PF14359,MF_03036,TIGR02133,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0148691_33	phrog_3136	140.6	4.60046e-42	N/A	unknown function
UniRef90	UHGV-0148691_33	UniRef90_UPI001C26B029	119.0	5.76e-30	ASCH domain-containing protein	N/A
COG	UHGV-0148691_33	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0148691_33	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0148691	Yes	22,716	61	57	1
UHGV-1628842	No	11,634	61	29	1