vOTU vOTU-027405

vOTU: vOTU-027405

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-027405
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00030 → vGENUS-09185 → vOTU-027405
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Mediterraneibacter → Mediterraneibacter faecis
Host range breadth	Species
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0090282
Biosample ID	SAMEA3136643
Genome length (bp)	31,881 bps
CheckV completeness	83.71% (Medium-quality)
CDS count	47
CDS density	93.37%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Mediterraneibacter	Total connections	27	Host agreement	77.78
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Mediterraneibacter → Mediterraneibacter faecis	Total connections	33	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 83.71)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0090282_1	K14059	107.5	2.4e-31	int; integrase	N/A
PHROG	UHGV-0090282_1	phrog_1	92.8	5.2e-27	integrase	integration and excision
UniRef90	UHGV-0090282_1	UniRef90_A0A373MXN6	484.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0090282_1	1304866.K413DRAFT_1180	213.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0090282_1	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
COG	UHGV-0090282_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0090282_1	PF14659,PF12286,MF_01808,NF007246,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-0090282_2	phrog_4431	78.5	9.5e-23	N/A	unknown function
UniRef90	UHGV-0090282_2	UniRef90_UPI001CD27D14	224.0	0	N/A	N/A
eggNOG-mapper	UHGV-0090282_2	1158602.I590_00688	66.2	0.00000000021	Short C-terminal domain	N/A
PHROG	UHGV-0090282_3	phrog_87	90.7	1.3e-26	metallo-protease	other
UniRef90	UHGV-0090282_3	UniRef90_A0A415UM51	218.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0090282_3	742765.HMPREF9457_02093	212.0	0	IrrE N-terminal-like domain	N/A
Pfam	UHGV-0090282_3	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0090282_3	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0090282_3	PF06114,COG3800	N/A	N/A	N/A	N/A
KOfam	UHGV-0090282_4	K22300	52.1	0.000000000000013	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0090282_4	phrog_2967	50.8	0.0000000000000024	transcriptional regulator	transcription regulation
UniRef90	UHGV-0090282_4	UniRef90_A0A1Q6J9F6	306.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0090282_4	658655.HMPREF0988_02594	108.0	7.82e-27	Helix-turn-helix	N/A
Pfam	UHGV-0090282_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0090282_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0090282_4	PF01381,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0090282_5	UniRef90_UPI001B3C87CA	134.0	1.29e-39	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0090282_5	1321814.HMPREF9089_00909	60.1	0.0000000000323	Helix-turn-helix domain of resolvase	N/A
structural_annotation	UHGV-0090282_5	PF21291,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0090282_6	K07741	139.8	4.19997e-41	antB; anti-repressor protein	N/A
PHROG	UHGV-0090282_6	phrog_63	141.7	5.79997e-42	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0090282_6	UniRef90_A0A564SBT3	459.0	0	Phage antirepressor protein KilAC domain protein	N/A
eggNOG-mapper	UHGV-0090282_6	411470.RUMGNA_02184	346.0	0	Phage antirepressor protein	N/A
Pfam	UHGV-0090282_6	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-0090282_6	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0090282_6	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-0090282_6	PF03374,PF08346,TIGR02681,COG3645,COG3561	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0090282_8	PF20037,COG3212	N/A	N/A	N/A	N/A
UniRef90	UHGV-0090282_9	UniRef90_A0A3E4LWT8	120.0	7.17e-34	HTH psq-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0090282_9	1304866.K413DRAFT_1183	49.3	0.00000119	N/A	N/A
structural_annotation	UHGV-0090282_9	PF21291,MF_00535,NF007257,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0090282_11	phrog_674	205.2	0	N/A	unknown function
UniRef90	UHGV-0090282_11	UniRef90_A0A373SW80	544.0	0	N/A	N/A
eggNOG-mapper	UHGV-0090282_11	411460.RUMTOR_02065	279.0	0	N/A	N/A
Pfam	UHGV-0090282_11	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0090282_11	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-0090282_12	phrog_155	121.9	4.7e-36	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0090282_12	UniRef90_UPI001D0DD6FE	303.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-0090282_12	411460.RUMTOR_02066	241.0	0	ERF superfamily	N/A
Pfam	UHGV-0090282_12	PF04404	N/A	N/A	ERF superfamily	ERF
COG	UHGV-0090282_12	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0090282_12	PF04404,TIGR00607,COG4712	N/A	N/A	N/A	N/A
KOfam	UHGV-0090282_13	K03111	129.2	5.3e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0090282_13	phrog_44	143.5	1.3004e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0090282_13	UniRef90_A0A1Q6J9G6	283.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0090282_13	411460.RUMTOR_02067	212.0	0	N/A	N/A
Pfam	UHGV-0090282_13	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0090282_13	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0090282_13	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0090282_13	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0090282_13	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0090282_14	phrog_3490	154.2	0	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0090282_14	UniRef90_A0A1Q6J935	338.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0090282_14	411460.RUMTOR_02068	284.0	0	N/A	N/A
Pfam	UHGV-0090282_14	PF02732	N/A	N/A	ERCC4 domain	ERCC4
structural_annotation	UHGV-0090282_14	PF03834,NF040956,COG1948	N/A	N/A	N/A	N/A
KOfam	UHGV-0090282_15	K02316	59.5	6.1e-17	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0090282_15	phrog_11992	154.4	1.4013e-45	N/A	unknown function
UniRef90	UHGV-0090282_15	UniRef90_A0A373STX8	358.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-0090282_15	476272.RUMHYD_01741	182.0	0	CHC2 zinc finger	N/A
PADLOC	UHGV-0090282_15	drt-UG29	50.3	0.000000000000023	DRT	DRT
Pfam	UHGV-0090282_15	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-0090282_15	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-0090282_15	PF01807	N/A	N/A	N/A	N/A
PHROG	UHGV-0090282_16	phrog_8841	648.8	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0090282_16	UniRef90_A0A373SU28	1212.0	0	N/A	N/A
eggNOG-mapper	UHGV-0090282_16	411460.RUMTOR_02070	932.0	0	N/A	N/A
Pfam	UHGV-0090282_16	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-0090282_16	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-0090282_16	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0090282_16	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
PHROG	UHGV-0090282_17	phrog_23374	50.2	0.000000000000029	N/A	unknown function
eggNOG-mapper	UHGV-0090282_18	658655.HMPREF0988_02579	65.1	0.00000000000437	N/A	N/A
PHROG	UHGV-0090282_19	phrog_954	197.2	0	DNA methyltransferase	other
UniRef90	UHGV-0090282_19	UniRef90_UPI001D01AC8C	325.0	0	class I SAM-dependent methyltransferase	N/A
eggNOG-mapper	UHGV-0090282_19	1280698.AUJS01000007_gene1028	320.0	0	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	N/A
PADLOC	UHGV-0090282_19	MTase_II_00074	192.7	0	Type II methyltransferase	RM
Pfam	UHGV-0090282_19	PF08241	N/A	N/A	Methyltransferase domain	Methyltransf_11
COG	UHGV-0090282_19	COG1092	N/A	N/A	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	N/A
PHROG	UHGV-0090282_22	phrog_5051	132.8	2.3e-39	N/A	unknown function
PHROG	UHGV-0090282_26	phrog_36	92.6	4.8e-27	transcriptional regulator	transcription regulation
UniRef90	UHGV-0090282_26	UniRef90_A0A373STV4	284.0	0	N/A	N/A
eggNOG-mapper	UHGV-0090282_26	411461.DORFOR_00754	154.0	0	sigma factor activity	N/A
Pfam	UHGV-0090282_26	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
COG	UHGV-0090282_26	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0090282_26	PF07374,MF_00674,NF007227,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-0090282_27	phrog_8187	44.8	0.000000000000036	N/A	unknown function
eggNOG-mapper	UHGV-0090282_27	411461.DORFOR_00752	267.0	0	N/A	N/A
PADLOC	UHGV-0090282_27	AbiN	40.5	0.000000000058	AbiN	Abi
PHROG	UHGV-0090282_28	phrog_509	276.6	0	terminase small subunit	head and packaging
UniRef90	UHGV-0090282_28	UniRef90_UPI00189A7385	402.0	0	phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0090282_28	999413.HMPREF1094_00222	251.0	0	DNA packaging	N/A
Pfam	UHGV-0090282_28	PF10668	N/A	N/A	Phage terminase small subunit	Phage_terminase
NCBIFam	UHGV-0090282_28	NF040601.1	N/A	N/A	phage terminase small subunit	N/A
COG	UHGV-0090282_28	COG5484	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0090282_28	NF040601,COG5484	N/A	N/A	N/A	N/A
KOfam	UHGV-0090282_29	K06909	208.1	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0090282_29	phrog_2	114.9	1.2e-33	terminase large subunit	head and packaging
UniRef90	UHGV-0090282_29	UniRef90_A0A3R6AA11	884.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0090282_29	411461.DORFOR_00750	817.0	0	COG COG1783 Phage terminase large subunit	N/A
Pfam	UHGV-0090282_29	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
NCBIFam	UHGV-0090282_29	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0090282_29	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0090282_29	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0090282_30	phrog_533	410.0	0	portal protein	head and packaging
UniRef90	UHGV-0090282_30	UniRef90_A0A173TXV5	897.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0090282_30	411461.DORFOR_00749	703.0	0	COG NOG25118 non supervised orthologous group	N/A
Pfam	UHGV-0090282_30	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0090282_30	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0090282_31	phrog_581	332.0	0	minor head protein	head and packaging
UniRef90	UHGV-0090282_31	UniRef90_UPI0018AA9658	1044.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0090282_31	411461.DORFOR_00748	940.0	0	N/A	N/A
Pfam	UHGV-0090282_31	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0090282_31	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0090282_31	PF06152,TIGR01641	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0090282_32	742765.HMPREF9457_02124	169.0	0	N/A	N/A
KOfam	UHGV-0090282_33	K07584	57.3	3.3e-16	N/A	N/A
PHROG	UHGV-0090282_33	phrog_4478	85.5	4.2e-25	peptidase	other
UniRef90	UHGV-0090282_33	UniRef90_UPI001D015AF1	196.0	0	ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0090282_33	411461.DORFOR_00746	150.0	0	Pfam:Peptidase_C108	N/A
Pfam	UHGV-0090282_33	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0090282_33	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0090282_33	PF04327,NF011124,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0090282_34	phrog_2303	140.9	9.10003e-42	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0090282_34	411461.DORFOR_00745	241.0	0	N/A	N/A
AcrCatalog	UHGV-0090282_34	cluster_74817	77.4	7.23e-20	NA	N/A
structural_annotation	UHGV-0090282_34	PF10788,MF_02110	N/A	N/A	N/A	N/A
PHROG	UHGV-0090282_35	phrog_10	170.6	0	major head protein	head and packaging
UniRef90	UHGV-0090282_35	UniRef90_A0A173TT07	637.0	0	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
eggNOG-mapper	UHGV-0090282_35	411461.DORFOR_00744	582.0	0	COG NOG20168 non supervised orthologous group	N/A
Pfam	UHGV-0090282_35	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0090282_35	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0090282_35	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0090282_35	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0090282_36	phrog_541	99.3	2.8e-29	head-tail adaptor	connector
eggNOG-mapper	UHGV-0090282_36	411461.DORFOR_00743	166.0	0	N/A	N/A
PHROG	UHGV-0090282_37	phrog_3366	137.6	5.19994e-41	N/A	unknown function
eggNOG-mapper	UHGV-0090282_37	411462.DORLON_00784	195.0	0	N/A	N/A
Pfam	UHGV-0090282_37	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0090282_37	PF20536,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0090282_38	phrog_556	154.2	0	minor head protein	head and packaging
UniRef90	UHGV-0090282_38	UniRef90_UPI00093128B4	198.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0090282_38	411462.DORLON_00783	214.0	0	N/A	N/A
structural_annotation	UHGV-0090282_38	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0090282_39	phrog_3266	149.2	1.26117e-44	tail completion	connector
eggNOG-mapper	UHGV-0090282_39	411461.DORFOR_00740	249.0	0	N/A	N/A
structural_annotation	UHGV-0090282_39	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0090282_40	phrog_3099	164.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0090282_40	411462.DORLON_00781	258.0	0	N/A	N/A
structural_annotation	UHGV-0090282_40	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0090282_41	phrog_4450	101.5	8.1e-30	N/A	unknown function
eggNOG-mapper	UHGV-0090282_41	411461.DORFOR_00738	112.0	1.03e-29	N/A	N/A
Pfam	UHGV-0090282_41	PF20378	N/A	N/A	N/A	DUF6673
structural_annotation	UHGV-0090282_41	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-0090282_42	phrog_706	164.5	0	N/A	unknown function
UniRef90	UHGV-0090282_42	UniRef90_A0A173TSE6	312.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0090282_42	411462.DORLON_00779	240.0	0	COG NOG24969 non supervised orthologous group	N/A
Pfam	UHGV-0090282_42	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0090282_42	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0090282_43	phrog_5602	44.0	0.0000000000029	N/A	unknown function
eggNOG-mapper	UHGV-0090282_43	411461.DORFOR_00736	79.0	2.98e-19	N/A	N/A
structural_annotation	UHGV-0090282_43	PF10122,COG4416	N/A	N/A	N/A	N/A
PHROG	UHGV-0090282_44	phrog_58	257.8	0	tail length tape measure protein	tail
UniRef90	UHGV-0090282_44	UniRef90_A0A173TTL9	983.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0090282_44	411461.DORFOR_00735	757.0	0	nuclear chromosome segregation	N/A
COG	UHGV-0090282_44	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0090282_44	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0090282_45	phrog_33	42.9	0.0000000000099	distal tail protein Dit	tail
UniRef90	UHGV-0090282_45	UniRef90_UPI00156E3DDD	166.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0090282_45	411462.DORLON_00776	351.0	0	N/A	N/A
structural_annotation	UHGV-0090282_45	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0090282_46	phrog_538	204.4	0	minor tail protein	tail
UniRef90	UHGV-0090282_46	UniRef90_UPI001F3E20C1	292.0	0	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-0090282_46	411460.RUMTOR_02096	439.0	0	N/A	N/A
Pfam	UHGV-0090282_46	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0090282_46	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0090282_47	phrog_9994	220.2	0	N/A	unknown function
UniRef90	UHGV-0090282_47	UniRef90_A0A6L8RVX5	234.0	0	H_lectin domain-containing protein	N/A
eggNOG-mapper	UHGV-0090282_47	742765.HMPREF9457_03373	257.0	0	N/A	N/A
structural_annotation	UHGV-0090282_47	PF20747	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0090282	Yes	31,881	41	84	1
UHGV-0149920	No	29,683	42	76	1