vOTU vOTU-027518

vOTU: vOTU-027518

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-027518
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Actinobacteriota → Coriobacteriia → Coriobacteriales → Atopobiaceae → Lancefieldella → Lancefieldella sp000564995
Taxonomy (UHGV)	vFAM-00024 → vSUBFAM-01436 → vGENUS-01444 → vOTU-027518
Host lineage	Bacteria → Actinobacteriota → Coriobacteriia → Coriobacteriales → Atopobiaceae → Lancefieldella → Lancefieldella sp000564995
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0152118
Biosample ID	SAMN05971665
Genome length (bp)	26,504 bps
CheckV completeness	83.32% (Medium-quality)
CDS count	40
CDS density	90.26%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Actinobacteriota → Coriobacteriia → Coriobacteriales → Atopobiaceae → Lancefieldella → Lancefieldella sp000564995	Total connections	5	Host agreement	100
PHIST-predicted host lineage	Bacteria → Actinobacteriota → Coriobacteriia → Coriobacteriales → Atopobiaceae → Lancefieldella → Lancefieldella sp000564995	Total connections	2	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 83.32)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0152118_2	K01447	66.4	5.2e-19	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0152118_2	phrog_14048	131.1	1.1e-38	endolysin	lysis
UniRef90	UHGV-0152118_2	UniRef90_B9CLI8	410.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0152118_2	553184.ATORI0001_1164	410.0	0	N-Acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0152118_2	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0152118_2	PF19127	N/A	N/A	Choline-binding repeat	Choline_bind_3
Pfam	UHGV-0152118_2	PF01473	N/A	N/A	Putative cell wall binding repeat	Choline_bind_1
COG	UHGV-0152118_2	COG5263	N/A	N/A	Glucan-binding domain (YG repeat)	N/A
structural_annotation	UHGV-0152118_2	PF01510,PF19127,MF_04111,TIGR04035,NF008758,COG5263,COG3023	N/A	N/A	N/A	N/A
PHROG	UHGV-0152118_3	phrog_297	58.0	1.8e-16	holin	lysis
UniRef90	UHGV-0152118_3	UniRef90_C8WA86	197.0	0	Holin, phage phi LC3 family	N/A
eggNOG-mapper	UHGV-0152118_3	521095.Apar_0594	197.0	0	COG5546 Small integral membrane protein	N/A
Pfam	UHGV-0152118_3	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-0152118_3	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-0152118_3	COG5546	N/A	N/A	N/A	N/A
PHROG	UHGV-0152118_5	phrog_13141	156.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0152118_5	521095.Apar_0592	298.0	0	N/A	N/A
structural_annotation	UHGV-0152118_5	PF08931,PF20747	N/A	N/A	N/A	N/A
PHROG	UHGV-0152118_7	phrog_538	160.2	0	minor tail protein	tail
UniRef90	UHGV-0152118_7	UniRef90_A0A261FFB2	263.0	0	Siphovirus ReqiPepy6 Gp37-like protein	N/A
eggNOG-mapper	UHGV-0152118_7	521095.Apar_0590	877.0	0	N/A	N/A
Pfam	UHGV-0152118_7	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0152118_7	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0152118_8	521095.Apar_0589	479.0	0	N/A	N/A
structural_annotation	UHGV-0152118_8	PF16774,TIGR02126,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0152118_9	phrog_1686	235.6	0	tail length tape measure protein	tail
UniRef90	UHGV-0152118_9	UniRef90_C8WA80	1186.0	0	Phage tape measure protein	N/A
eggNOG-mapper	UHGV-0152118_9	521095.Apar_0588	1186.0	0	nuclear chromosome segregation	N/A
Pfam	UHGV-0152118_9	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0152118_9	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0152118_9	COG0840	N/A	N/A	Methyl-accepting chemotaxis protein (MCP)	N/A
structural_annotation	UHGV-0152118_9	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0152118_12	phrog_117	91.0	1.5e-26	major tail protein	tail
UniRef90	UHGV-0152118_12	UniRef90_D6E9Y1	170.0	0	Bacterial surface proteins containing Ig-like domains	N/A
eggNOG-mapper	UHGV-0152118_12	521095.Apar_0585	378.0	0	domain, Protein	N/A
COG	UHGV-0152118_12	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0152118_12	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0152118_13	phrog_123	46.3	0.00000000000079	tail terminator	connector
UniRef90	UHGV-0152118_13	UniRef90_A0A430JLT2	56.2	0.0000000957	N/A	N/A
eggNOG-mapper	UHGV-0152118_13	521095.Apar_0584	221.0	0	N/A	N/A
structural_annotation	UHGV-0152118_13	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-0152118_15	phrog_501	56.8	4.8e-16	head closure Hc1	connector
eggNOG-mapper	UHGV-0152118_15	521095.Apar_0582	186.0	0	N/A	N/A
structural_annotation	UHGV-0152118_15	PF12206,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0152118_16	phrog_137	62.8	4.9e-18	head-tail adaptor Ad1	connector
UniRef90	UHGV-0152118_16	UniRef90_UPI001105CCE8	122.0	2.58e-33	Gp19/Gp15/Gp42 family protein	N/A
eggNOG-mapper	UHGV-0152118_16	521095.Apar_0581	247.0	0	Phage protein Gp19/Gp15/Gp42	N/A
Pfam	UHGV-0152118_16	PF09355	N/A	N/A	N/A	Phage_Gp19
PHROG	UHGV-0152118_17	phrog_10	138.2	8.00001e-41	major head protein	head and packaging
UniRef90	UHGV-0152118_17	UniRef90_C8WA72	521.0	0	Major capsid protein HK97	N/A
eggNOG-mapper	UHGV-0152118_17	521095.Apar_0580	521.0	0	Phage capsid family	N/A
Pfam	UHGV-0152118_17	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0152118_17	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0152118_17	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0152118_17	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0152118_18	phrog_233	67.5	4.1e-19	head scaffolding protein	head and packaging
UniRef90	UHGV-0152118_18	UniRef90_A0A412EZF6	76.3	0.00000000000000897	N/A	N/A
eggNOG-mapper	UHGV-0152118_18	521095.Apar_0579	251.0	0	N/A	N/A
PHROG	UHGV-0152118_19	phrog_13257	142.4	4.76441e-44	head maturation protease	head and packaging
UniRef90	UHGV-0152118_19	UniRef90_A0A3E4QYQ8	217.0	0	CdiA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0152118_19	521095.Apar_0578	490.0	0	N/A	N/A
PHROG	UHGV-0152118_20	phrog_104	285.1	0	portal protein	head and packaging
UniRef90	UHGV-0152118_20	UniRef90_A0A5C7F7E3	556.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0152118_20	521095.Apar_0577	866.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0152118_20	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0152118_20	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0152118_21	phrog_9	115.8	4.3e-34	terminase large subunit	head and packaging
UniRef90	UHGV-0152118_21	UniRef90_UPI001305466D	337.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0152118_21	521095.Apar_0576	970.0	0	Terminase	N/A
Pfam	UHGV-0152118_21	PF13401	N/A	N/A	AAA domain	AAA_22
COG	UHGV-0152118_21	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0152118_21	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0152118_23	phrog_338	71.6	1.4e-20	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0152118_23	UniRef90_C8WA66	207.0	0	HNH nuclease	N/A
eggNOG-mapper	UHGV-0152118_23	521095.Apar_0574	207.0	0	HNH nucleases	N/A
COG	UHGV-0152118_23	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0152118_23	PF01844	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0152118_24	1203602.HMPREF1527_01098	75.9	9.35e-18	N/A	N/A
eggNOG-mapper	UHGV-0152118_26	1203602.HMPREF1527_01100	84.0	2.97e-18	N/A	N/A
structural_annotation	UHGV-0152118_26	PF04545,MF_00674,TIGR03879	N/A	N/A	N/A	N/A
KOfam	UHGV-0152118_27	K03111	128.7	7.9e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0152118_27	phrog_44	133.2	2e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0152118_27	UniRef90_C8WA62	277.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0152118_27	521095.Apar_0570	277.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0152118_27	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0152118_27	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0152118_27	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0152118_27	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0152118_27	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0152118_30	K14059	196.4	0	int; integrase	N/A
PHROG	UHGV-0152118_30	phrog_1	191.0	0	integrase	integration and excision
UniRef90	UHGV-0152118_30	UniRef90_C8WA59	768.0	0	Integrase family protein	N/A
eggNOG-mapper	UHGV-0152118_30	521095.Apar_0567	768.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0152118_30	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0152118_30	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0152118_30	PF00589,PF13102,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0152118_31	UniRef90_UPI0009310119	47.8	0.0000073	Rho termination factor N-terminal domain-containing protein	N/A
KOfam	UHGV-0152118_32	K14194	44.1	4.3e-17	sdrC_D_E; serine-aspartate repeat-containing protein C/D/E	N/A
UniRef90	UHGV-0152118_32	UniRef90_UPI001EF9F008	91.7	7.04e-17	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0152118_32	661087.HMPREF1008_00250	126.0	1.27e-28	cell wall anchor domain	N/A
Pfam	UHGV-0152118_32	PF17961	N/A	N/A	Bacterial Ig domain	Big_8
Pfam	UHGV-0152118_32	PF05737	N/A	N/A	Collagen binding domain	Collagen_bind
COG	UHGV-0152118_32	COG4932	N/A	N/A	Clumping factor A-related surface protein, MSCRAMM (microbial surface components recognizing adhesive matrix molecules) family, DEv-IgG fold	N/A
structural_annotation	UHGV-0152118_32	PF11766,NF033845,COG1470	N/A	N/A	N/A	N/A
PHROG	UHGV-0152118_33	phrog_355	64.5	1.5e-18	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0152118_33	UniRef90_UPI000931BFE8	67.0	0.0000000000115	N/A	N/A
eggNOG-mapper	UHGV-0152118_33	521095.Apar_0563	196.0	0	N/A	N/A
Pfam	UHGV-0152118_33	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0152118_33	PF14359	N/A	N/A	N/A	N/A
PHROG	UHGV-0152118_36	phrog_21525	72.4	6.4e-21	N/A	unknown function
Pfam	UHGV-0152118_36	PF13248	N/A	N/A	zinc-ribbon domain	zf-ribbon_3
structural_annotation	UHGV-0152118_37	PF02559,TIGR03318,COG1329	N/A	N/A	N/A	N/A
KOfam	UHGV-0152118_40	K07741	42.6	0.000000000019	antB; anti-repressor protein	N/A
PHROG	UHGV-0152118_40	phrog_130	75.2	1.2e-21	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0152118_40	UniRef90_C8WA47	321.0	0	Prophage antirepressor	N/A
eggNOG-mapper	UHGV-0152118_40	521095.Apar_0554	321.0	0	Antirepressor	N/A
Pfam	UHGV-0152118_40	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0152118_40	COG3617	N/A	N/A	Prophage antirepressor	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0152118	Yes	26,504	46	83	1
UHGV-1416112	No	16,176	47	51	1