vOTU vOTU-027929

vOTU: vOTU-027929

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-027929
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00134 → vGENUS-00111 → vOTU-027929
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0159659
Biosample ID	SAMN06110008
Genome length (bp)	31,117 bps
CheckV completeness	88.44% (Medium-quality)
CDS count	41
CDS density	92.84%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	1559	Host agreement	86.4
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii	Total connections	31	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 88.44)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0159659_1	K14059	101.9	1e-29	int; integrase	N/A
PHROG	UHGV-0159659_1	phrog_1	123.4	2.6e-36	integrase	integration and excision
UniRef90	UHGV-0159659_1	UniRef90_A0A1G5CL52	803.0	0	Phage integrase family protein	N/A
eggNOG-mapper	UHGV-0159659_1	693746.OBV_41260	192.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0159659_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0159659_1	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0159659_1	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0159659_2	1232447.BAHW02000014_gene830	53.5	0.000000202	N/A	N/A
PHROG	UHGV-0159659_4	phrog_1914	150.9	7.00649e-45	N/A	unknown function
UniRef90	UHGV-0159659_4	UniRef90_A0A373XNL4	350.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0159659_4	1160721.RBI_I01604	173.0	0	N/A	N/A
Pfam	UHGV-0159659_4	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0159659_4	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0159659_4	PF06114,COG2856	N/A	N/A	N/A	N/A
UniRef90	UHGV-0159659_5	UniRef90_A0A373XLN2	276.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0159659_5	1235793.C809_00679	99.0	5.83e-25	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0159659_5	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0159659_5	PF05339,NF007257,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0159659_6	UniRef90_UPI001494A832	48.9	0.00000401	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0159659_6	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0159659_6	PF05339,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0159659_8	phrog_1384	123.4	1.8e-36	Mom-like DNA modification protein	other
eggNOG-mapper	UHGV-0159659_8	411483.FAEPRAA2165_02721	143.0	8.72028e-42	COG NOG12663 non supervised orthologous group	N/A
structural_annotation	UHGV-0159659_8	PF11124,MF_02210,NF040502,COG3818	N/A	N/A	N/A	N/A
PHROG	UHGV-0159659_9	phrog_6058	41.5	0.000000000015	N/A	unknown function
structural_annotation	UHGV-0159659_9	NF033787	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0159659_10	COG1862	N/A	N/A	N/A	N/A
KOfam	UHGV-0159659_14	K03497	154.8	1.4013e-45	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0159659_14	phrog_6218	241.5	0	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0159659_14	UniRef90_A0A3D3D7T1	784.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0159659_14	1160721.RBI_I01596	240.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0159659_14	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
NCBIFam	UHGV-0159659_14	TIGR00180.1	N/A	N/A	ParB/RepB/Spo0J family partition protein	N/A
COG	UHGV-0159659_14	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
KOfam	UHGV-0159659_15	K03427	44.8	0.0000000000015	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-0159659_15	phrog_5696	212.4	0	N/A	unknown function
UniRef90	UHGV-0159659_15	UniRef90_UPI001B3C9C54	249.0	0	N-6 DNA methylase	N/A
eggNOG-mapper	UHGV-0159659_15	397291.C804_06560	150.0	3.45981e-42	N-6 DNA Methylase	N/A
Pfam	UHGV-0159659_15	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-0159659_15	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-0159659_15	COG0286	N/A	N/A	N/A	N/A
PHROG	UHGV-0159659_16	phrog_323	85.5	3.6e-28	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0159659_16	UniRef90_UPI001C01CFF8	317.0	0	SANT/Myb domain-containing protein	N/A
eggNOG-mapper	UHGV-0159659_16	394503.Ccel_3305	346.0	0	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	N/A
Pfam	UHGV-0159659_16	PF13921	N/A	N/A	Myb-like DNA-binding domain	Myb_DNA-bind_6
dbAPIS	UHGV-0159659_16	APIS006	N/A	N/A	Trigger programmed cell death (PCD) by P4 prophage.	N/A
structural_annotation	UHGV-0159659_16	PF11112,NF040595	N/A	N/A	N/A	N/A
KOfam	UHGV-0159659_17	K04763	211.5	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0159659_17	phrog_1	171.1	0	integrase	integration and excision
UniRef90	UHGV-0159659_17	UniRef90_UPI001B3C6404	369.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0159659_17	397291.C804_01139	231.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0159659_17	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-0159659_17	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0159659_17	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0159659_17	PF00589,PF13495,MF_01808,TIGR02224,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-0159659_18	phrog_24518	87.1	2.1e-25	N/A	unknown function
eggNOG-mapper	UHGV-0159659_18	1519439.JPJG01000077_gene922	109.0	3.76e-27	N/A	N/A
PHROG	UHGV-0159659_19	phrog_824	144.7	2.99878e-43	N/A	unknown function
UniRef90	UHGV-0159659_19	UniRef90_A0A3D3D6C6	249.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0159659_19	397288.C806_00096	159.0	0	VRR_NUC	N/A
Pfam	UHGV-0159659_19	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0159659_19	PF08774	N/A	N/A	N/A	N/A
PHROG	UHGV-0159659_22	phrog_3584	145.7	3.40516e-43	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0159659_22	1235800.C819_00515	70.1	0.0000000000184	N/A	N/A
structural_annotation	UHGV-0159659_22	PF21578,NF041486	N/A	N/A	N/A	N/A
PHROG	UHGV-0159659_23	phrog_31049	40.2	0.00000000000039	N/A	unknown function
eggNOG-mapper	UHGV-0159659_23	431943.CKL_4074	50.8	0.00000453	N/A	N/A
structural_annotation	UHGV-0159659_23	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0159659_24	phrog_119	70.9	1.9e-20	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0159659_24	UniRef90_A0A412ULY9	226.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0159659_24	1158607.UAU_01026	102.0	5.07e-27	HNH endonuclease	N/A
Pfam	UHGV-0159659_24	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0159659_24	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0159659_25	phrog_5110	83.8	1.4e-24	terminase small subunit	head and packaging
UniRef90	UHGV-0159659_25	UniRef90_A0A4U7JDP0	114.0	8.67e-31	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0159659_25	1211817.CCAT010000053_gene2128	100.0	4.45e-26	N/A	N/A
Pfam	UHGV-0159659_25	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0159659_25	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0159659_26	phrog_9	299.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0159659_26	UniRef90_A0A412UM03	1101.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0159659_26	86416.Clopa_0337	640.0	0	Phage Terminase	N/A
Pfam	UHGV-0159659_26	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0159659_26	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0159659_26	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0159659_26	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
KOfam	UHGV-0159659_27	K07319	171.9	0	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0159659_27	phrog_67	141.8	1.68156e-44	DNA methyltransferase	other
UniRef90	UHGV-0159659_27	UniRef90_A0A412UM21	380.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0159659_27	1226322.HMPREF1545_02860	165.0	0	N/A	N/A
PADLOC	UHGV-0159659_27	MTase_II_00157	143.5	1.69557e-43	Type II methyltransferase	RM
Pfam	UHGV-0159659_27	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0159659_27	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0159659_27	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0159659_28	phrog_12	95.6	4.2e-28	portal protein	head and packaging
UniRef90	UHGV-0159659_28	UniRef90_A0A412ULV9	755.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0159659_28	1415774.U728_1254	261.0	0	Phage portal protein	N/A
Pfam	UHGV-0159659_28	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0159659_28	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0159659_28	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0159659_28	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0159659_29	K01358	138.4	7.30006e-41	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0159659_29	phrog_94	206.6	0	head maturation protease	head and packaging
UniRef90	UHGV-0159659_29	UniRef90_A0A412ULU1	464.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0159659_29	86416.Clopa_0340	170.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0159659_29	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0159659_29	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0159659_29	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0159659_30	phrog_10	122.7	3.5e-36	major head protein	head and packaging
UniRef90	UHGV-0159659_30	UniRef90_A0A412ULW9	734.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0159659_30	1211817.CCAT010000053_gene2132	323.0	0	Phage capsid family	N/A
Pfam	UHGV-0159659_30	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0159659_30	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0159659_30	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0159659_30	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0159659_31	phrog_749	54.9	0.0000000000000014	N/A	unknown function
UniRef90	UHGV-0159659_31	UniRef90_A0A1G5CMX8	106.0	6.11e-28	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0159659_31	1211817.CCAT010000053_gene2133	57.0	0.00000000329	N/A	N/A
PHROG	UHGV-0159659_32	phrog_19734	72.1	7e-21	N/A	unknown function
UniRef90	UHGV-0159659_32	UniRef90_UPI00057FE645	58.2	0.0000000124	phage head closure protein	N/A
eggNOG-mapper	UHGV-0159659_32	86416.Clopa_0343	60.1	0.000000000446	N/A	N/A
NCBIFam	UHGV-0159659_32	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0159659_32	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0159659_33	272623.L59277	50.4	0.00000168	N/A	N/A
structural_annotation	UHGV-0159659_33	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
UniRef90	UHGV-0159659_34	UniRef90_UPI000E5564A4	274.0	0	HK97 gp10 family phage protein	N/A
Pfam	UHGV-0159659_34	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0159659_34	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0159659_35	phrog_88	75.2	9.3e-22	major tail protein	tail
UniRef90	UHGV-0159659_35	UniRef90_A0A1G5CNS8	150.0	3.69943e-42	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0159659_35	1321782.HMPREF1986_01362	65.5	0.00000000019	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0159659_35	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0159659_35	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0159659_36	PF11836	N/A	N/A	N/A	N/A
KOfam	UHGV-0159659_38	K20478	73.0	7e-22	GOLGB1; golgin subfamily B member 1	N/A
PHROG	UHGV-0159659_38	phrog_1272	261.4	0	tail length tape measure protein	tail
UniRef90	UHGV-0159659_38	UniRef90_A0A412ULX0	1447.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0159659_38	588581.Cpap_1264	185.0	5.60519e-45	Tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0159659_38	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-0159659_38	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0159659_38	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0159659_39	phrog_33	67.9	2.6e-19	distal tail protein Dit	tail
UniRef90	UHGV-0159659_39	UniRef90_R6GVG8	78.2	0.000000000000139	Phage putative tail component N-domain protein	N/A
eggNOG-mapper	UHGV-0159659_39	1160721.RBI_I01575	87.0	1.33e-17	Phage tail protein	N/A
COG	UHGV-0159659_39	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0159659_39	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0159659_40	phrog_1067	112.3	4.9e-33	minor head protein	head and packaging
UniRef90	UHGV-0159659_40	UniRef90_A0A1G5CPD2	130.0	1.71e-30	Phage minor structural protein, N-terminal region	N/A
eggNOG-mapper	UHGV-0159659_40	1462527.CCDM010000003_gene3730	69.7	0.000000000665	gp58-like protein	N/A
NCBIFam	UHGV-0159659_40	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0159659_40	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0159659_40	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0159659	Yes	31,117	39	88	1
UHGV-1488629	No	26,460	40	75	1