vOTU vOTU-028055

vOTU: vOTU-028055

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-028055
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00581 → vGENUS-00476 → vOTU-028055
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-103
Host range breadth	Genus
Lifestyle	temperate (evidence: geNomad)

Representative genome
Genome ID	UHGV-0161682
Biosample ID	SAMN06110166
Genome length (bp)	25,639 bps
CheckV completeness	61.99% (Medium-quality)
CDS count	42
CDS density	93.02%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-103	Total connections	161	Host agreement	98.76
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-103	Total connections	47	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 61.99)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0161682_1	1410650.JHWL01000003_gene2815	93.2	1.23e-18	N/A	N/A
PHROG	UHGV-0161682_3	phrog_511	177.2	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0161682_3	1410650.JHWL01000003_gene2827	258.0	0	N/A	N/A
structural_annotation	UHGV-0161682_3	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0161682_4	phrog_12105	129.8	1.3e-38	N/A	unknown function
eggNOG-mapper	UHGV-0161682_4	1226322.HMPREF1545_03850	88.2	8.54e-21	N/A	N/A
PHROG	UHGV-0161682_5	phrog_15239	45.9	0.0000000000009	N/A	unknown function
PHROG	UHGV-0161682_6	phrog_1357	214.5	0	major head protein	head and packaging
UniRef90	UHGV-0161682_6	UniRef90_A0A2V2CFL5	611.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0161682_6	1410650.JHWL01000003_gene2830	275.0	0	N/A	N/A
NCBIFam	UHGV-0161682_6	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0161682_6	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0161682_7	phrog_13908	193.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0161682_7	1410650.JHWL01000003_gene2831	116.0	2.75e-27	N/A	N/A
KOfam	UHGV-0161682_8	K07584	44.3	0.0000000000031	N/A	N/A
PHROG	UHGV-0161682_8	phrog_4478	54.3	0.0000000000000015	peptidase	other
UniRef90	UHGV-0161682_8	UniRef90_UPI001A8F44BB	54.7	0.000000208	ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0161682_8	521098.Aaci_1816	55.8	0.0000000124	Cysteine protease Prp	N/A
Pfam	UHGV-0161682_8	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0161682_8	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0161682_8	PF04327,NF011133,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0161682_9	phrog_156	294.3	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0161682_9	1410650.JHWL01000003_gene2833	522.0	0	N/A	N/A
structural_annotation	UHGV-0161682_9	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0161682_10	K06909	128.2	8.3e-38	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0161682_10	phrog_979	130.1	6.7e-40	terminase large subunit	head and packaging
UniRef90	UHGV-0161682_10	UniRef90_A0A810Q5R0	612.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0161682_10	1410650.JHWL01000003_gene2834	568.0	0	N/A	N/A
Pfam	UHGV-0161682_10	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0161682_10	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0161682_10	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0161682_11	phrog_1206	41.8	0.0000000000052	terminase small subunit	head and packaging
KOfam	UHGV-0161682_12	K01160	57.0	5.9e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0161682_12	phrog_1682	79.1	6.3e-23	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0161682_12	UniRef90_A0A174WGH7	124.0	9.17e-34	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-0161682_12	1235790.C805_00029	117.0	1.12e-32	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-0161682_12	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0161682_12	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0161682_13	phrog_474	116.9	2.8e-34	phosphofructokinase	other
UniRef90	UHGV-0161682_13	UniRef90_A0A7V6W4J9	115.0	9.07e-31	N/A	N/A
eggNOG-mapper	UHGV-0161682_13	665956.HMPREF1032_00639	115.0	1.92e-31	N/A	N/A
Pfam	UHGV-0161682_13	PF19905	N/A	N/A	N/A	DUF6378
structural_annotation	UHGV-0161682_13	PF19905	N/A	N/A	N/A	N/A
PHROG	UHGV-0161682_16	phrog_599	48.6	0.00000000000019	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0161682_16	UniRef90_A0A845MWR1	55.1	0.0000000128	Restriction alleviation protein, Lar family	N/A
Pfam	UHGV-0161682_16	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0161682_16	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
structural_annotation	UHGV-0161682_16	PF14354,NF007260	N/A	N/A	N/A	N/A
UniRef90	UHGV-0161682_19	UniRef90_A0A8D9PDK2	56.2	0.0000000774	Zinc-ribbon containing domain	N/A
PHROG	UHGV-0161682_20	phrog_3136	150.5	4.2039e-45	N/A	unknown function
UniRef90	UHGV-0161682_20	UniRef90_UPI001CBCD733	164.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0161682_20	388467.A19Y_0909	54.3	0.000000426	ASCH domain	N/A
COG	UHGV-0161682_20	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0161682_20	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
Pfam	UHGV-0161682_21	PF04448	N/A	N/A	N/A	DUF551
eggNOG-mapper	UHGV-0161682_22	1232443.BAIA02000078_gene48	112.0	2.84e-30	N/A	N/A
structural_annotation	UHGV-0161682_22	PF11717,TIGR02450	N/A	N/A	N/A	N/A
PHROG	UHGV-0161682_25	phrog_9474	124.1	1.2e-36	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0161682_25	UniRef90_A0A1I7FTR4	116.0	4.59e-27	DnaD and phage-associated domain-containing protein	N/A
eggNOG-mapper	UHGV-0161682_25	644966.Tmar_0029	109.0	1.36e-24	HNH endonuclease	N/A
COG	UHGV-0161682_25	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
KOfam	UHGV-0161682_26	K03111	138.4	8.10007e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0161682_26	phrog_44	138.1	5.70006e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0161682_26	UniRef90_G4KXN0	182.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0161682_26	693746.OBV_12860	182.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0161682_26	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0161682_26	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0161682_26	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0161682_26	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0161682_26	PF00436,MF_00984,NF005242,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0161682_27	K07455	289.4	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0161682_27	phrog_148	282.2	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0161682_27	UniRef90_U2SBP2	371.0	0	Recombination and repair protein RecT	N/A
eggNOG-mapper	UHGV-0161682_27	1226322.HMPREF1545_00015	371.0	0	RecT family	N/A
Pfam	UHGV-0161682_27	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0161682_27	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0161682_27	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0161682_27	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0161682_28	PF12844,MF_00535,NF041951,COG5499	N/A	N/A	N/A	N/A
PHROG	UHGV-0161682_29	phrog_434	319.3	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0161682_29	UniRef90_UPI000952E6A4	298.0	0	YqaJ viral recombinase family protein	N/A
eggNOG-mapper	UHGV-0161682_29	1121344.JHZO01000003_gene985	282.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-0161682_29	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0161682_29	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0161682_29	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0161682_29	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0161682_33	1235835.C814_03153	68.6	0.0000000000000174	N/A	N/A
structural_annotation	UHGV-0161682_33	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0161682_35	1131462.DCF50_p2449	56.6	0.000000126	Bacterial Ig-like domain 2	N/A
NCBIFam	UHGV-0161682_35	NF033223.2	N/A	N/A	YHYH domain-containing protein	N/A
COG	UHGV-0161682_35	COG5492	N/A	N/A	N/A	N/A
UniRef90	UHGV-0161682_36	UniRef90_UPI001D0E690A	98.2	1.35e-25	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0161682_36	1321782.HMPREF1986_00318	56.6	0.000000000649	N/A	N/A
structural_annotation	UHGV-0161682_36	PF21291,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0161682_37	K22300	62.0	1.4e-17	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0161682_37	phrog_8	57.0	5.3e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0161682_37	UniRef90_K1TCM8	108.0	2.94e-28	Protein containing Helix-turn-helix type 3 domain protein	N/A
eggNOG-mapper	UHGV-0161682_37	928210.CALU01000047_gene122	61.2	0.000000000329	Helix-turn-helix domain	N/A
Pfam	UHGV-0161682_37	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0161682_37	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0161682_37	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0161682_38	K07729	63.8	3.7e-18	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0161682_38	phrog_8	43.4	0.0000000000077	transcriptional regulator	transcription regulation
UniRef90	UHGV-0161682_38	UniRef90_R5AVU4	79.3	2.76e-18	CI-like repressor	N/A
eggNOG-mapper	UHGV-0161682_38	608538.HTH_1322	62.0	0.00000000016	PBP superfamily domain	N/A
Pfam	UHGV-0161682_38	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0161682_38	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0161682_38	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0161682_40	K14059	135.2	8.5e-40	int; integrase	N/A
PHROG	UHGV-0161682_40	phrog_1	152.7	2.8026e-45	integrase	integration and excision
UniRef90	UHGV-0161682_40	UniRef90_UPI000F051A1D	420.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0161682_40	693746.OBV_43340	404.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0161682_40	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-0161682_40	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0161682_40	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0161682_40	PF00589,PF13495,MF_02055,TIGR02225,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0161682_42	K00286	316.6	0	proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]	N/A
UniRef90	UHGV-0161682_42	UniRef90_A0A3D1VFF0	424.0	0	Pyrroline-5-carboxylate reductase	N/A
eggNOG-mapper	UHGV-0161682_42	657322.FPR_29500	250.0	0	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline	N/A
Pfam	UHGV-0161682_42	PF03807	N/A	N/A	NADP oxidoreductase coenzyme F420-dependent	F420_oxidored
Pfam	UHGV-0161682_42	PF14748	N/A	N/A	Pyrroline-5-carboxylate reductase dimerisation	P5CR_dimer
NCBIFam	UHGV-0161682_42	TIGR00112.1	N/A	N/A	pyrroline-5-carboxylate reductase	N/A
COG	UHGV-0161682_42	COG0345	N/A	N/A	Pyrroline-5-carboxylate reductase	N/A
HAMAP	UHGV-0161682_42	MF_01925	N/A	N/A	Pyrroline-5-carboxylate reductase [proC]	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0161682	Yes	25,639	60	62	1
UHGV-1630794	No	12,285	61	30	1