vOTU vOTU-028125

vOTU: vOTU-028125

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-028125
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-01291 → vGENUS-07719 → vOTU-028125
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E
Host range breadth	Genus
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0163573
Biosample ID	SAMN06110196
Genome length (bp)	16,066 bps
CheckV completeness	65.76% (Medium-quality)
CDS count	27
CDS density	98.26%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E	Total connections	444	Host agreement	95.72
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	37	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 65.76)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0163573_1	UniRef90_A0A374N9Y2	293.0	0	N/A	N/A
Pfam	UHGV-0163573_1	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
structural_annotation	UHGV-0163573_1	PF10651,NF040788	N/A	N/A	N/A	N/A
PHROG	UHGV-0163573_2	phrog_1067	121.7	4.3e-36	minor head protein	head and packaging
UniRef90	UHGV-0163573_2	UniRef90_A0A348ZBV6	163.0	5.61921e-43	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0163573_2	1160721.RBI_I01574	130.0	4.51e-30	Prophage endopeptidase tail	N/A
Pfam	UHGV-0163573_2	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0163573_2	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0163573_2	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0163573_2	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0163573_3	phrog_33	44.3	0.0000000000044	distal tail protein Dit	tail
UniRef90	UHGV-0163573_3	UniRef90_A0A1G5CPA2	117.0	2.93e-28	Phage-related protein	N/A
eggNOG-mapper	UHGV-0163573_3	1246.JMEA01000006_gene51	60.1	0.0000000619	phage tail	N/A
COG	UHGV-0163573_3	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0163573_3	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0163573_4	phrog_23464	253.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0163573_4	665950.HMPREF1025_02660	181.0	4.2039e-45	phage tail tape measure protein	N/A
COG	UHGV-0163573_4	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0163573_4	COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0163573_6	phrog_1021	45.2	0.00000000000011	N/A	unknown function
PHROG	UHGV-0163573_7	phrog_885	136.4	1.7e-40	major tail protein	tail
UniRef90	UHGV-0163573_7	UniRef90_A0A101Y2E4	160.0	8.40779e-45	Big_5 domain-containing protein	N/A
eggNOG-mapper	UHGV-0163573_7	1321814.HMPREF9089_00935	174.0	0	N/A	N/A
structural_annotation	UHGV-0163573_7	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0163573_8	PF12691	N/A	N/A	N/A	N/A
UniRef90	UHGV-0163573_9	UniRef90_UPI001A9B6FBF	162.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0163573_9	642492.Clole_0747	133.0	5.02e-38	N/A	N/A
structural_annotation	UHGV-0163573_9	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0163573_10	phrog_1951	94.2	8.8e-28	head-tail adaptor	connector
UniRef90	UHGV-0163573_10	UniRef90_A0A374MZF9	181.0	0	Phage head-tail adapter protein	N/A
eggNOG-mapper	UHGV-0163573_10	1414720.CBYM010000040_gene1649	62.0	0.0000000000451	head-tail adaptor	N/A
COG	UHGV-0163573_10	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0163573_10	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0163573_11	phrog_5223	55.8	6.8e-16	neck protein	connector
eggNOG-mapper	UHGV-0163573_11	931276.Cspa_c10180	48.1	0.00000553	N/A	N/A
NCBIFam	UHGV-0163573_11	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0163573_11	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0163573_12	phrog_10	150.3	1.68156e-44	major head protein	head and packaging
UniRef90	UHGV-0163573_12	UniRef90_A0A374N9V9	725.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0163573_12	1280689.AUJC01000011_gene1521	328.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0163573_12	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0163573_12	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0163573_12	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0163573_12	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0163573_13	K01358	120.3	2.4e-35	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0163573_13	phrog_94	187.4	0	head maturation protease	head and packaging
UniRef90	UHGV-0163573_13	UniRef90_A0A374NBM3	401.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0163573_13	1203606.HMPREF1526_00979	176.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0163573_13	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0163573_13	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0163573_13	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0163573_14	phrog_12	179.9	0	portal protein	head and packaging
UniRef90	UHGV-0163573_14	UniRef90_A0A374NAE1	771.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0163573_14	626523.GCWU000342_01027	407.0	0	Portal protein	N/A
Pfam	UHGV-0163573_14	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0163573_14	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0163573_14	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0163573_15	phrog_9	393.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0163573_15	UniRef90_A0A374NB45	981.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0163573_15	1235793.C809_01917	725.0	0	Phage Terminase	N/A
Pfam	UHGV-0163573_15	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0163573_15	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0163573_15	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0163573_15	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0163573_16	phrog_1066	116.1	1.8e-34	N/A	unknown function
UniRef90	UHGV-0163573_16	UniRef90_A0A0D0SQQ8	84.0	2e-18	N/A	N/A
eggNOG-mapper	UHGV-0163573_16	1203606.HMPREF1526_00982	104.0	1.89e-27	N/A	N/A
PHROG	UHGV-0163573_17	phrog_119	54.2	0.0000000000000023	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0163573_17	UniRef90_A0A374N9T6	251.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0163573_17	1235793.C809_01915	117.0	4.3e-32	HNH endonuclease	N/A
COG	UHGV-0163573_17	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0163573_18	phrog_8	40.8	0.000000000046	transcriptional regulator	transcription regulation
UniRef90	UHGV-0163573_18	UniRef90_A0A374MXG7	100.0	4.61e-26	XRE family transcriptional regulator	N/A
Pfam	UHGV-0163573_18	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0163573_18	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
PHROG	UHGV-0163573_21	phrog_25754	64.8	4.7e-19	N/A	unknown function
eggNOG-mapper	UHGV-0163573_21	97139.C824_00736	72.0	0.0000000000000073	N/A	N/A
structural_annotation	UHGV-0163573_21	PF06372,NF041655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0163573_22	UniRef90_UPI000E4DC4DA	126.0	2.18e-34	helix-turn-helix domain-containing protein	N/A
structural_annotation	UHGV-0163573_22	PF15597	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0163573_25	PF02559,MF_00667,TIGR02861	N/A	N/A	N/A	N/A
KOfam	UHGV-0163573_26	K01160	42.9	0.000000000013	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0163573_26	phrog_140	95.1	7.7e-28	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0163573_26	UniRef90_A0A2N0UXU6	268.0	0	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-0163573_26	411462.DORLON_00806	206.0	0	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0163573_26	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0163573_26	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0163573_26	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0163573_27	phrog_16687	74.2	1.1e-21	N/A	unknown function
eggNOG-mapper	UHGV-0163573_27	1123511.KB905868_gene197	66.2	0.00000000000032	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0163573	Yes	16,066	42	66	1
UHGV-1592995	No	11,762	43	48	1