vOTU vOTU-028184

vOTU: vOTU-028184

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-028184
Number of genomes	3
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00136 → vGENUS-00514 → vOTU-028184
Host lineage	Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0164368
Biosample ID	SAMN06164436
Genome length (bp)	30,907 bps
CheckV completeness	68.10% (Medium-quality)
CDS count	42
CDS density	93.32%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella	Total connections	28	Host agreement	85.71
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae	Total connections	2	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 68.1)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0164368_1	phrog_1156	226.5	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0164368_1	UniRef90_R6NFT7	559.0	0	Phage/plasmid primase P4 family C-terminal domain	N/A
eggNOG-mapper	UHGV-0164368_1	1121866.AUGK01000003_gene1422	198.0	0	Phage plasmid primase, P4 family	N/A
Pfam	UHGV-0164368_1	PF19263	N/A	N/A	N/A	DUF5906
Pfam	UHGV-0164368_1	PF03288	N/A	N/A	Poxvirus D5 protein-like	Pox_D5
NCBIFam	UHGV-0164368_1	TIGR01613.1	N/A	N/A	phage/plasmid primase, P4 family	N/A
COG	UHGV-0164368_1	COG3378	N/A	N/A	DNA primase, phage- or plasmid-associated	N/A
KOfam	UHGV-0164368_4	K14415	329.4	0	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	N/A
PHROG	UHGV-0164368_4	phrog_1075	428.7	0	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0164368_4	UniRef90_A0A3D2X8T0	583.0	0	RNA-splicing ligase RtcB	N/A
eggNOG-mapper	UHGV-0164368_4	397290.C810_01387	547.0	0	tRNA-splicing ligase RtcB	N/A
Pfam	UHGV-0164368_4	PF01139	N/A	N/A	tRNA-splicing ligase RtcB	RtcB
COG	UHGV-0164368_4	COG1690	N/A	N/A	RNA-splicing ligase RtcB, repairs tRNA damage	N/A
structural_annotation	UHGV-0164368_4	PF01139,MF_03144,NF007153,COG1690	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0164368_6	1415774.U728_1676	57.0	0.000000071	DNA-packaging protein gp3	N/A
PHROG	UHGV-0164368_7	phrog_4264	49.1	0.0000000000001	N/A	unknown function
eggNOG-mapper	UHGV-0164368_7	442493.A8E2H1_BPPHE	49.7	0.000000637	N/A	N/A
PHROG	UHGV-0164368_11	phrog_6244	56.7	6.4e-16	N/A	unknown function
eggNOG-mapper	UHGV-0164368_11	1354300.AUQY01000005_gene215	100.0	1.11e-26	N/A	N/A
UniRef90	UHGV-0164368_13	UniRef90_R9JFJ9	96.7	6.58e-25	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0164368_13	1235800.C819_01469	99.8	6.47e-27	N/A	N/A
structural_annotation	UHGV-0164368_13	PF20075,TIGR03070,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0164368_14	K14060	122.8	3.9e-36	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-0164368_14	phrog_125	162.8	0	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0164368_14	UniRef90_R6N9Q2	276.0	0	Resolvase	N/A
eggNOG-mapper	UHGV-0164368_14	931626.Awo_c01430	193.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0164368_14	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-0164368_14	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0164368_14	PF00239,PF02796,NF009949,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-0164368_16	phrog_38	192.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-0164368_16	UniRef90_A0A810QA10	659.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0164368_16	1298920.KI911353_gene2682	475.0	0	TIGRFAM Phage	N/A
NCBIFam	UHGV-0164368_16	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-0164368_16	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0164368_16	PF17289,PF04466,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
PHROG	UHGV-0164368_17	phrog_64	243.2	0	portal protein	head and packaging
UniRef90	UHGV-0164368_17	UniRef90_R6P563	857.0	0	SPP1 family phage portal protein	N/A
eggNOG-mapper	UHGV-0164368_17	1121866.AUGK01000003_gene1429	418.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0164368_17	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0164368_17	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0164368_18	phrog_59	133.1	1.2e-39	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0164368_18	UniRef90_UPI001048CC1B	138.0	5.28e-38	NUMOD4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0164368_18	1229751.R9QM99_9CAUD	129.0	2.23e-35	HNH endonuclease	N/A
PADLOC	UHGV-0164368_18	HEase_00016	116.9	3.2e-34	homing endonuclease	RM
Pfam	UHGV-0164368_18	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
Pfam	UHGV-0164368_18	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-0164368_18	PF07463,PF07453,TIGR01453	N/A	N/A	N/A	N/A
UniRef90	UHGV-0164368_19	UniRef90_A0A7C7EK05	55.8	0.00000303	N/A	N/A
structural_annotation	UHGV-0164368_19	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0164368_20	phrog_544	60.5	2.4e-17	major head protein	head and packaging
eggNOG-mapper	UHGV-0164368_20	428127.EUBDOL_01555	254.0	0	N/A	N/A
structural_annotation	UHGV-0164368_20	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0164368_21	phrog_390	62.3	8.4e-18	Arc-like repressor	transcription regulation
UniRef90	UHGV-0164368_21	UniRef90_A0A7S8CBU7	63.9	0.00000000000724	Termination factor Rho	N/A
eggNOG-mapper	UHGV-0164368_21	1033743.CAES01000104_gene3498	50.1	0.000000302	N/A	N/A
UniRef90	UHGV-0164368_22	UniRef90_R6N215	187.0	0	Phage QLRG family putative DNA packaging	N/A
eggNOG-mapper	UHGV-0164368_22	1298920.KI911353_gene2658	56.6	0.00000000566	N/A	N/A
Pfam	UHGV-0164368_22	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-0164368_22	TIGR01560	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0164368_23	1121866.AUGK01000003_gene1432	85.1	2.6e-19	N/A	N/A
UniRef90	UHGV-0164368_24	UniRef90_UPI001BBD4500	68.6	0.0000000000233	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0164368_24	1298920.KI911353_gene2654	70.9	0.000000000000649	N/A	N/A
eggNOG-mapper	UHGV-0164368_25	1121333.JMLH01000047_gene1014	55.8	0.0000000613	N/A	N/A
structural_annotation	UHGV-0164368_25	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0164368_26	phrog_158	58.0	2e-16	major tail protein	tail
UniRef90	UHGV-0164368_26	UniRef90_A0A1C6L0H9	243.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0164368_26	1232453.BAIF02000058_gene1634	110.0	2.53e-29	N/A	N/A
Pfam	UHGV-0164368_26	PF08813	N/A	N/A	Phage tail tube protein, TTP	Phage_tail_3
structural_annotation	UHGV-0164368_26	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-0164368_27	UniRef90_A0A496N7D3	172.0	0	N/A	N/A
eggNOG-mapper	UHGV-0164368_27	1123263.AUKY01000015_gene1618	93.2	3.33e-23	N/A	N/A
Pfam	UHGV-0164368_27	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-0164368_27	PF16478	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0164368_28	1211844.CBLM010000023_gene987	52.4	0.000000716	N/A	N/A
PHROG	UHGV-0164368_29	phrog_1535	158.1	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0164368_29	1121866.AUGK01000003_gene1437	333.0	0	phage tail tape measure protein	N/A
COG	UHGV-0164368_29	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
PHROG	UHGV-0164368_30	phrog_1194	91.3	8.7e-27	N/A	unknown function
eggNOG-mapper	UHGV-0164368_30	742740.HMPREF9474_03515	131.0	5.88e-38	N/A	N/A
structural_annotation	UHGV-0164368_30	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0164368_31	phrog_13879	284.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0164368_31	1235800.C819_00474	502.0	0	N/A	N/A
structural_annotation	UHGV-0164368_31	PF03256,PF16466,PF13550,MF_00813,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0164368_32	phrog_18725	68.0	1.6e-19	N/A	unknown function
eggNOG-mapper	UHGV-0164368_32	1235800.C819_00473	101.0	1.9e-24	N/A	N/A
PHROG	UHGV-0164368_33	phrog_1220	45.3	0.0000000000014	head protein	head and packaging
PHROG	UHGV-0164368_34	phrog_5302	235.1	0	tail protein	tail
UniRef90	UHGV-0164368_34	UniRef90_R6M197	195.0	0	Ig-like_bact domain-containing protein	N/A
eggNOG-mapper	UHGV-0164368_34	1121439.dsat_1918	101.0	1.57e-20	cellulose 1,4-beta-cellobiosidase activity	N/A
COG	UHGV-0164368_34	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
structural_annotation	UHGV-0164368_34	PF07210,PF13620,PF16893,NF040788,COG2512	N/A	N/A	N/A	N/A
KOfam	UHGV-0164368_36	K00986	159.5	0	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-0164368_36	phrog_1423	240.1	0	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0164368_36	UniRef90_A0A849CV99	595.0	0	RNA-directed DNA polymerase	N/A
eggNOG-mapper	UHGV-0164368_36	755164.D6PSR5_9CAUD	220.0	0	RNA-directed DNA polymerase activity	N/A
PADLOC	UHGV-0164368_36	icity0040	119.2	8e-35	RT (reverse transcriptase)	CRISPR-CAS
Pfam	UHGV-0164368_36	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
structural_annotation	UHGV-0164368_36	PF00078,MF_01390,TIGR04416,COG3344	N/A	N/A	N/A	N/A
PHROG	UHGV-0164368_38	phrog_18593	52.4	0.000000000000011	N/A	unknown function
UniRef90	UHGV-0164368_38	UniRef90_A0A521IRB0	119.0	1.51e-31	Chitin-binding type-3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0164368_38	994573.T472_0212005	110.0	3.36e-28	N/A	N/A
Pfam	UHGV-0164368_38	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-0164368_38	PF14600	N/A	N/A	N/A	N/A
PHROG	UHGV-0164368_39	phrog_37604	99.1	4.1e-29	N/A	unknown function
eggNOG-mapper	UHGV-0164368_39	457412.RSAG_01109	97.8	1.68e-23	N/A	N/A
KOfam	UHGV-0164368_40	K01447	75.5	9.6e-22	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0164368_40	phrog_1794	246.1	0	amidase	lysis
UniRef90	UHGV-0164368_40	UniRef90_A0A849CVD3	444.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0164368_40	908340.HMPREF9406_0181	330.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
AcrCatalog	UHGV-0164368_40	cluster_53013	79.0	3.88e-19	NA	N/A
Pfam	UHGV-0164368_40	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0164368_40	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0164368_40	PF01510,PF18342,MF_04111,NF008758,COG3023,COG4991	N/A	N/A	N/A	N/A
PHROG	UHGV-0164368_41	phrog_17876	89.5	3.2e-26	N/A	unknown function
eggNOG-mapper	UHGV-0164368_41	411483.FAEPRAA2165_01926	77.4	5.2e-17	N/A	N/A
PHROG	UHGV-0164368_42	phrog_6918	106.8	1.2e-31	holin	lysis
UniRef90	UHGV-0164368_42	UniRef90_A0A849CVA3	137.0	3.93e-40	Holin	N/A
eggNOG-mapper	UHGV-0164368_42	1297617.JPJD01000020_gene301	105.0	2.38e-28	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-0164368_42	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
NCBIFam	UHGV-0164368_42	TIGR01673.1	N/A	N/A	phage holin	N/A
structural_annotation	UHGV-0164368_42	PF09682,TIGR01673	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0164368	Yes	30,907	50	68	1
UHGV-0318858	No	29,731	50	66	1
UHGV-0202270	No	26,034	51	57	1