vOTU vOTU-028318

vOTU: vOTU-028318

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-028318
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00013 → vGENUS-00581 → vOTU-028318
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0008575
Biosample ID	N/A
Genome length (bp)	37,408 bps
CheckV completeness	88.46% (Medium-quality)
CDS count	64
CDS density	92.23%
tRNA count	3
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	897	Host agreement	98.66
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	6	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 88.46)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0008575_1	K13884	49.6	0.000000000000041	MARCO; macrophage receptor with collagenous structure	N/A
PHROG	UHGV-0008575_1	phrog_4433	92.7	4.5e-27	N/A	unknown function
eggNOG-mapper	UHGV-0008575_1	394503.Ccel_3068	53.1	0.00000754	regulation of DNA-templated transcription, elongation	N/A
Pfam	UHGV-0008575_1	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0008575_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0008575_1	NF007410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0008575_2	PF10743,NF033787	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0008575_6	PF06718	N/A	N/A	N/A	N/A
PHROG	UHGV-0008575_8	phrog_7838	107.5	1.1e-31	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0008575_8	UniRef90_A0A8D9UGW3	169.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-0008575_8	742767.HMPREF9456_02052	137.0	8.36e-38	N/A	N/A
structural_annotation	UHGV-0008575_8	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
KOfam	UHGV-0008575_9	K03111	146.9	2.00386e-43	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0008575_9	phrog_44	147.0	8.54792e-44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0008575_9	UniRef90_D4K451	272.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0008575_9	718252.FP2_06770	272.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0008575_9	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0008575_9	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0008575_9	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0008575_9	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0008575_9	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0008575_10	K02086	68.0	1.4e-19	dnaD; DNA replication protein	N/A
PHROG	UHGV-0008575_10	phrog_186	77.4	2e-22	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0008575_10	UniRef90_A0A6N7TLH4	253.0	0	DnaD domain protein	N/A
eggNOG-mapper	UHGV-0008575_10	877411.JMMA01000002_gene2292	69.3	0.0000000000506	N/A	N/A
Pfam	UHGV-0008575_10	PF19808	N/A	N/A	N/A	DUF6291
Pfam	UHGV-0008575_10	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-0008575_10	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
structural_annotation	UHGV-0008575_10	PF19808,PF07261,TIGR01446,COG3935	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0008575_11	PF11417	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0008575_12	PF01775,MF_00273,NF001981,COG2157	N/A	N/A	N/A	N/A
PHROG	UHGV-0008575_14	phrog_757	191.0	0	DNA methyltransferase	other
UniRef90	UHGV-0008575_14	UniRef90_A0A355KVL2	364.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0008575_14	748224.HMPREF9436_03069	402.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0008575_14	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0008575_14	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0008575_16	phrog_3136	140.4	5.59959e-42	N/A	unknown function
UniRef90	UHGV-0008575_16	UniRef90_UPI001C02A61B	184.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0008575_16	97139.C824_00742	67.8	0.00000000000658	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0008575_16	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0008575_16	PF04266,MF_00684,NF003443,COG4933	N/A	N/A	N/A	N/A
KOfam	UHGV-0008575_17	K01160	60.8	4e-17	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0008575_17	phrog_34	60.9	2.7e-17	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0008575_17	UniRef90_A0A6N7TND6	226.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0008575_17	875454.BAEW01000002_gene491	138.0	1.55e-40	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0008575_17	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0008575_17	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0008575_17	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0008575_19	phrog_36	54.7	0.0000000000000019	transcriptional regulator	transcription regulation
structural_annotation	UHGV-0008575_19	PF07374,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
UniRef90	UHGV-0008575_20	UniRef90_UPI0018CC2891	115.0	8.06e-30	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0008575_20	1235790.C805_00037	113.0	8.86e-30	N/A	N/A
structural_annotation	UHGV-0008575_20	PF04218	N/A	N/A	N/A	N/A
KOfam	UHGV-0008575_21	K06909	143.9	1.3999e-42	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0008575_21	phrog_10250	175.9	0	N/A	unknown function
UniRef90	UHGV-0008575_21	UniRef90_A0A844D8I4	842.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0008575_21	411490.ANACAC_00783	489.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0008575_21	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-0008575_21	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-0008575_21	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0008575_21	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0008575_21	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0008575_22	phrog_64	121.7	2.6e-36	portal protein	head and packaging
UniRef90	UHGV-0008575_22	UniRef90_A0A6N7TNT3	896.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0008575_22	642492.Clole_2764	82.4	0.0000000000000551	phage portal protein, SPP1	N/A
Pfam	UHGV-0008575_22	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0008575_22	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0008575_24	phrog_2468	81.3	1e-23	head morphogenesis	head and packaging
UniRef90	UHGV-0008575_24	UniRef90_A0A6N7TLR7	642.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0008575_24	1504822.CCNO01000013_gene286	115.0	1.96e-25	cell adhesion	N/A
Pfam	UHGV-0008575_24	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0008575_24	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0008575_24	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
KOfam	UHGV-0008575_25	K07727	50.7	0.000000000000044	K07727; putative transcriptional regulator	N/A
UniRef90	UHGV-0008575_25	UniRef90_A0A2V2FGW5	108.0	1.31e-29	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0008575_25	1378168.N510_01451	89.4	7.93e-23	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0008575_25	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0008575_25	PF13443,NF000090,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0008575_27	PF07342	N/A	N/A	N/A	N/A
KOfam	UHGV-0008575_29	K07741	69.4	1.1e-19	antB; anti-repressor protein	N/A
PHROG	UHGV-0008575_29	phrog_130	228.6	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0008575_29	UniRef90_A0A396LJD2	340.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-0008575_29	663952.SDD27957_09050	253.0	0	COG3617 Prophage antirepressor	N/A
Pfam	UHGV-0008575_29	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0008575_29	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0008575_29	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0008575_29	PF02498,PF03374,TIGR02681,COG3617	N/A	N/A	N/A	N/A
PHROG	UHGV-0008575_30	phrog_5	44.3	0.0000000000041	tail completion or Neck1 protein	connector
UniRef90	UHGV-0008575_30	UniRef90_A0A6N7TNP6	289.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0008575_30	929506.CbC4_1219	89.4	1.19e-20	N/A	N/A
structural_annotation	UHGV-0008575_30	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0008575_31	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0008575_32	phrog_544	155.5	0	major head protein	head and packaging
UniRef90	UHGV-0008575_32	UniRef90_R0BKA1	458.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0008575_32	476272.RUMHYD_01776	339.0	0	N/A	N/A
structural_annotation	UHGV-0008575_32	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0008575_34	phrog_17977	42.4	0.0000000000098	N/A	unknown function
UniRef90	UHGV-0008575_34	UniRef90_A0A844DHJ8	122.0	1.41e-33	Phage head closure protein	N/A
structural_annotation	UHGV-0008575_34	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0008575_35	PF13554	N/A	N/A	N/A	N/A
PHROG	UHGV-0008575_36	phrog_885	71.7	8.3e-21	major tail protein	tail
eggNOG-mapper	UHGV-0008575_36	1111121.HMPREF1247_0789	150.0	3.22299e-43	N/A	N/A
structural_annotation	UHGV-0008575_36	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0008575_39	phrog_9959	92.1	3.4e-27	tail length tape measure protein	tail
UniRef90	UHGV-0008575_39	UniRef90_A0A6N7TLD3	754.0	0	Tape measure protein	N/A
eggNOG-mapper	UHGV-0008575_39	1492737.FEM08_12070	149.0	4.79e-35	tape measure	N/A
Pfam	UHGV-0008575_39	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0008575_39	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0008575_39	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0008575_39	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
UniRef90	UHGV-0008575_40	UniRef90_A0A7G9WF98	90.1	4.45e-19	MtfA protein	N/A
eggNOG-mapper	UHGV-0008575_40	1111121.HMPREF1247_1241	92.4	1.22e-20	N/A	N/A
structural_annotation	UHGV-0008575_40	PF05709,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0008575_41	phrog_3558	192.9	0	tail protein	tail
UniRef90	UHGV-0008575_41	UniRef90_A0A844DGT5	165.0	1.73e-40	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0008575_41	411460.RUMTOR_00484	161.0	1.95e-39	Prophage endopeptidase tail	N/A
Pfam	UHGV-0008575_41	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-0008575_41	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0008575_41	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0008575_43	phrog_10993	152.5	4.2039e-45	Hoc-like head decoration	head and packaging
UniRef90	UHGV-0008575_43	UniRef90_A0A1Q6KPN8	200.0	0	N/A	N/A
eggNOG-mapper	UHGV-0008575_43	718252.FP2_16970	188.0	0	N/A	N/A
structural_annotation	UHGV-0008575_43	PF19789,PF18911	N/A	N/A	N/A	N/A
UniRef90	UHGV-0008575_45	UniRef90_UPI001D07AB37	85.1	8.7e-21	XkdX family protein	N/A
eggNOG-mapper	UHGV-0008575_45	718252.FP2_16990	84.0	4.19e-21	Phage uncharacterised protein (Phage_XkdX)	N/A
Pfam	UHGV-0008575_45	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
structural_annotation	UHGV-0008575_45	PF09693	N/A	N/A	N/A	N/A
KOfam	UHGV-0008575_46	K24213	77.8	9.5e-23	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	N/A
PHROG	UHGV-0008575_46	phrog_17147	285.7	0	N/A	unknown function
UniRef90	UHGV-0008575_46	UniRef90_A0A374JQW7	477.0	0	N/A	N/A
eggNOG-mapper	UHGV-0008575_46	33035.JPJF01000043_gene1001	204.0	0	N/A	N/A
Pfam	UHGV-0008575_46	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
eggNOG-mapper	UHGV-0008575_47	457412.RSAG_04672	67.4	0.000000000000523	N/A	N/A
PHROG	UHGV-0008575_48	phrog_1382	47.6	0.0000000000001	N/A	unknown function
eggNOG-mapper	UHGV-0008575_48	33035.JPJF01000043_gene998	52.0	0.0000000302	N/A	N/A
KOfam	UHGV-0008575_49	K07273	167.7	0	acm; lysozyme	N/A
PHROG	UHGV-0008575_49	phrog_291	132.4	3.3e-39	endolysin	lysis
UniRef90	UHGV-0008575_49	UniRef90_A0A564U0D3	358.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-0008575_49	718252.FP2_04890	218.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0008575_49	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0008575_49	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0008575_49	PF01183,TIGR04053,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0008575_51	phrog_15303	84.6	9.1e-25	N/A	unknown function
KOfam	UHGV-0008575_53	K07741	50.8	0.000000000000054	antB; anti-repressor protein	N/A
PHROG	UHGV-0008575_53	phrog_63	150.6	1.12104e-44	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0008575_53	UniRef90_UPI00189D7521	169.0	0	phage regulatory protein/antirepressor Ant	N/A
eggNOG-mapper	UHGV-0008575_53	99179.B5TRB0_9CAUD	149.0	2.23998e-41	DNA binding	N/A
Pfam	UHGV-0008575_53	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
Pfam	UHGV-0008575_53	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
NCBIFam	UHGV-0008575_53	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
structural_annotation	UHGV-0008575_53	PF09669,PF03374,TIGR02681,COG3646,COG3645	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0008575_54	PF07342	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0008575_56	1160721.RBI_I00206	57.4	0.000000000589	N/A	N/A
structural_annotation	UHGV-0008575_56	PF19839,NF040976	N/A	N/A	N/A	N/A
PHROG	UHGV-0008575_57	phrog_3754	94.1	1.4e-27	N/A	unknown function
eggNOG-mapper	UHGV-0008575_57	1235790.C805_00054	106.0	5.11e-28	N/A	N/A
PHROG	UHGV-0008575_58	phrog_21718	87.1	2e-25	N/A	unknown function
eggNOG-mapper	UHGV-0008575_58	397290.C810_05210	81.3	2.91e-17	N/A	N/A
PHROG	UHGV-0008575_59	phrog_22984	70.3	2.5e-20	N/A	unknown function
PHROG	UHGV-0008575_60	phrog_16490	198.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0008575_60	397290.C810_01328	130.0	3.46e-33	N/A	N/A
PHROG	UHGV-0008575_62	phrog_20016	207.1	0	N/A	unknown function
UniRef90	UHGV-0008575_62	UniRef90_A0A285PT46	216.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0008575_62	1226322.HMPREF1545_00077	187.0	0	N/A	N/A
structural_annotation	UHGV-0008575_62	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0008575_63	PF12510	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0008575	Yes	37,408	56	88	1
UHGV-0166946	No	20,244	56	48	1