vOTU vOTU-028607

vOTU: vOTU-028607

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-028607
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00007 → vSUBFAM-04750 → vGENUS-08830 → vOTU-028607
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae
Host range breadth	Family
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0172457
Biosample ID	N/A
Genome length (bp)	36,478 bps
CheckV completeness	60.61% (Medium-quality)
CDS count	48
CDS density	86.72%
tRNA count	2
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae	Total connections	97	Host agreement	89.69
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae	Total connections	8	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 60.61)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0172457_1	phrog_14105	217.2	0	N/A	unknown function
UniRef90	UHGV-0172457_1	UniRef90_UPI001D0F7ECA	201.0	0	pentapeptide repeat-containing protein	N/A
eggNOG-mapper	UHGV-0172457_1	742740.HMPREF9474_02379	225.0	0	dextransucrase activity	N/A
Pfam	UHGV-0172457_1	PF01469	N/A	N/A	Pentapeptide repeats (8 copies)	Pentapeptide_2
COG	UHGV-0172457_1	COG5263	N/A	N/A	Glucan-binding domain (YG repeat)	N/A
PHROG	UHGV-0172457_4	phrog_4608	162.6	0	anti-repressor	transcription regulation
UniRef90	UHGV-0172457_4	UniRef90_A0A373NRG3	412.0	0	ORF6N domain-containing protein	N/A
eggNOG-mapper	UHGV-0172457_4	926561.KB900622_gene670	174.0	0	ORF6N domain	N/A
Pfam	UHGV-0172457_4	PF10543	N/A	N/A	ORF6N domain	ORF6N
COG	UHGV-0172457_4	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-0172457_4	PF08346,TIGR02681,COG3561	N/A	N/A	N/A	N/A
PHROG	UHGV-0172457_5	phrog_8	41.4	0.000000000031	transcriptional regulator	transcription regulation
UniRef90	UHGV-0172457_5	UniRef90_UPI00046674E5	84.7	2.5e-20	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0172457_5	349123.Lreu23DRAFT_3080	53.5	0.0000000119	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0172457_5	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0172457_5	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
KOfam	UHGV-0172457_6	K22300	49.9	0.000000000000076	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0172457_6	phrog_8	72.0	1.2e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-0172457_6	UniRef90_A0A412SB20	112.0	9.8e-30	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0172457_6	411462.DORLON_00819	70.9	0.0000000000000346	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0172457_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0172457_6	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0172457_6	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0172457_7	PF18963	N/A	N/A	N/A	N/A
KOfam	UHGV-0172457_9	K01448	113.2	2.9e-33	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0172457_9	phrog_12727	234.1	0	endolysin	lysis
UniRef90	UHGV-0172457_9	UniRef90_A0A1Y4IK94	239.0	0	SPOR domain-containing protein	N/A
eggNOG-mapper	UHGV-0172457_9	411490.ANACAC_00597	178.0	0	Cell wall hydrolase autolysin	N/A
Pfam	UHGV-0172457_9	PF01832	N/A	N/A	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
Pfam	UHGV-0172457_9	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0172457_9	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0172457_9	PF01832,PF08230,NF038016,TIGR02594,COG1705,COG4322	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0172457_10	742735.HMPREF9467_00753	69.7	0.000000000000071	N/A	N/A
structural_annotation	UHGV-0172457_10	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0172457_11	phrog_20274	153.9	0	N/A	unknown function
UniRef90	UHGV-0172457_11	UniRef90_A0A1C5ZRD7	226.0	0	Predicted membrane protein	N/A
eggNOG-mapper	UHGV-0172457_11	1235799.C818_04238	194.0	0	Putative ABC-transporter type IV	N/A
Pfam	UHGV-0172457_11	PF06541	N/A	N/A	Putative ABC-transporter type IV	ABC_trans_CmpB
COG	UHGV-0172457_11	COG4905	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0172457_11	PF06541,COG4905	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0172457_13	397291.C804_01137	181.0	0	N/A	N/A
Pfam	UHGV-0172457_13	PF09479	N/A	N/A	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
PHROG	UHGV-0172457_14	phrog_18725	57.6	2.5e-16	N/A	unknown function
eggNOG-mapper	UHGV-0172457_14	585501.HMPREF6123_0822	87.8	2.6e-20	N/A	N/A
PHROG	UHGV-0172457_15	phrog_13879	289.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0172457_15	1304866.K413DRAFT_0774	556.0	0	N/A	N/A
structural_annotation	UHGV-0172457_15	PF03256,PF16466,PF13550,MF_00813,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0172457_16	phrog_1194	53.0	0.0000000000000062	N/A	unknown function
eggNOG-mapper	UHGV-0172457_16	1298920.KI911353_gene4840	79.0	3.86e-17	N/A	N/A
structural_annotation	UHGV-0172457_16	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0172457_17	phrog_1535	278.0	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0172457_17	411902.CLOBOL_00126	116.0	3.34e-23	N/A	N/A
COG	UHGV-0172457_17	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0172457_19	PF16478	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0172457_20	476272.RUMHYD_01968	178.0	0	N/A	N/A
structural_annotation	UHGV-0172457_20	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0172457_21	PF05657	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0172457_22	476272.RUMHYD_01963	97.1	7.79e-23	N/A	N/A
eggNOG-mapper	UHGV-0172457_23	1298920.KI911353_gene2656	60.5	0.00000000107	N/A	N/A
structural_annotation	UHGV-0172457_23	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0172457_24	phrog_443	53.4	0.0000000000000077	holin	lysis
UniRef90	UHGV-0172457_24	UniRef90_UPI0009B98E42	95.9	1.14e-24	holin	N/A
eggNOG-mapper	UHGV-0172457_24	1235797.C816_04172	88.6	1.44e-22	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0172457_24	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0172457_24	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0172457_25	phrog_1863	47.8	0.00000000000014	N/A	unknown function
eggNOG-mapper	UHGV-0172457_25	1292035.H476_3392	49.3	0.00000249	N/A	N/A
eggNOG-mapper	UHGV-0172457_26	397290.C810_01402	57.8	0.0000000037	N/A	N/A
UniRef90	UHGV-0172457_27	UniRef90_A0A416G2T8	73.6	0.00000000000000209	Rho_N domain-containing protein	N/A
Pfam	UHGV-0172457_27	PF07498	N/A	N/A	Rho termination factor, N-terminal domain	Rho_N
structural_annotation	UHGV-0172457_27	PF21169	N/A	N/A	N/A	N/A
PHROG	UHGV-0172457_28	phrog_29	155.6	0	major head protein	head and packaging
UniRef90	UHGV-0172457_28	UniRef90_A0A173UF26	645.0	0	Phage major capsid protein E	N/A
eggNOG-mapper	UHGV-0172457_28	1347368.HG964404_gene4993	161.0	1.52742e-43	Phage major capsid protein E	N/A
Pfam	UHGV-0172457_28	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0172457_28	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0172457_29	phrog_909	83.2	2.7e-24	major head protein	head and packaging
UniRef90	UHGV-0172457_29	UniRef90_R7BGI8	174.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0172457_29	1497679.EP56_02915	55.8	0.0000000126	N/A	N/A
UniRef90	UHGV-0172457_30	UniRef90_R6C0B6	110.0	4.85e-27	Phage capsid scaffolding protein	N/A
PHROG	UHGV-0172457_31	phrog_859	57.6	1.7e-16	portal protein	head and packaging
UniRef90	UHGV-0172457_31	UniRef90_A0A416G2H7	202.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0172457_31	1207076.ALAT01000105_gene1902	58.5	0.000000171	head morphogenesis protein, SPP1	N/A
Pfam	UHGV-0172457_31	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0172457_31	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0172457_31	PF04233,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-0172457_32	phrog_1382	52.2	0.0000000000000058	N/A	unknown function
eggNOG-mapper	UHGV-0172457_32	33035.JPJF01000043_gene998	45.8	0.00000581	N/A	N/A
eggNOG-mapper	UHGV-0172457_33	457412.RSAG_04672	67.8	0.00000000000037	N/A	N/A
KOfam	UHGV-0172457_34	K00986	89.8	3.9e-26	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-0172457_34	phrog_1423	138.1	3.09995e-41	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0172457_34	UniRef90_UPI00156F87C5	653.0	0	RNA-directed DNA polymerase	N/A
eggNOG-mapper	UHGV-0172457_34	33035.JPJF01000043_gene1000	258.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
PADLOC	UHGV-0172457_34	icity0040	57.4	6.5e-17	RT (reverse transcriptase)	CRISPR-CAS
Pfam	UHGV-0172457_34	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
COG	UHGV-0172457_34	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-0172457_34	PF00078,MF_04065,TIGR04416,COG3344	N/A	N/A	N/A	N/A
PHROG	UHGV-0172457_35	phrog_17147	251.5	0	N/A	unknown function
UniRef90	UHGV-0172457_35	UniRef90_A0A374JQW7	845.0	0	N/A	N/A
eggNOG-mapper	UHGV-0172457_35	33035.JPJF01000043_gene1001	216.0	0	N/A	N/A
PHROG	UHGV-0172457_37	phrog_64	154.9	0	portal protein	head and packaging
UniRef90	UHGV-0172457_37	UniRef90_A0A416G2F2	736.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0172457_37	1298920.KI911353_gene2663	465.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0172457_37	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0172457_37	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0172457_38	phrog_36	66.0	8e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-0172457_38	UniRef90_A0A352SH29	105.0	5.98e-27	RNA polymerase subunit sigma-70 (Fragment)	N/A
eggNOG-mapper	UHGV-0172457_38	97138.C820_00221	84.0	1.08e-18	sigma factor activity	N/A
COG	UHGV-0172457_38	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0172457_38	PF07374,MF_00674,NF008895,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-0172457_39	phrog_38	153.4	1.4013e-45	terminase large subunit	head and packaging
UniRef90	UHGV-0172457_39	UniRef90_A0A4Q5C857	961.0	0	Terminase_6C domain-containing protein	N/A
eggNOG-mapper	UHGV-0172457_39	397290.C810_01390	665.0	0	chromosome segregation	N/A
COG	UHGV-0172457_39	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0172457_39	PF17289,PF04466,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
PHROG	UHGV-0172457_40	phrog_229	123.6	1.6e-36	MazG-like pyrophosphatase	other
UniRef90	UHGV-0172457_40	UniRef90_D7GNT7	165.0	0	MazG nucleotide pyrophosphohydrolase domain	N/A
eggNOG-mapper	UHGV-0172457_40	428125.CLOLEP_01391	158.0	0	MazG nucleotide pyrophosphohydrolase domain	N/A
Pfam	UHGV-0172457_40	PF03819	N/A	N/A	MazG nucleotide pyrophosphohydrolase domain	MazG
COG	UHGV-0172457_40	COG1694	N/A	N/A	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	N/A
structural_annotation	UHGV-0172457_40	PF03819,MF_01020,NF001613,COG0140	N/A	N/A	N/A	N/A
PHROG	UHGV-0172457_42	phrog_850	363.8	0	RNA-binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0172457_42	UniRef90_A0A417AUN2	803.0	0	N/A	N/A
eggNOG-mapper	UHGV-0172457_42	476272.RUMHYD_01913	541.0	0	N/A	N/A
Pfam	UHGV-0172457_42	PF11443	N/A	N/A	N/A	DUF2828
COG	UHGV-0172457_42	COG2304	N/A	N/A	Secreted protein containing bacterial Ig-like domain and vWFA domain	N/A
structural_annotation	UHGV-0172457_42	PF11443,MF_01340,COG2304	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0172457_43	397290.C810_01353	158.0	0	N/A	N/A
UniRef90	UHGV-0172457_45	UniRef90_A0A3E5AKX4	122.0	3.03e-35	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0172457_45	1235799.C818_04243	115.0	2.05e-33	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0172457_45	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0172457_45	PF13443,NF000090,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0172457_47	PF12993	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0172457	Yes	36,478	42	61	1
UHGV-0195144	No	23,567	42	39	1