vOTU vOTU-028608

vOTU: vOTU-028608

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-028608
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Firmicutes_C → Negativicutes → Acidaminococcales → Acidaminococcaceae → Phascolarctobacterium_A → Phascolarctobacterium_A succinatutens
Taxonomy (UHGV)	vFAM-00008 → vSUBFAM-00831 → vOTU-028608
Host lineage	Bacteria → Firmicutes_C → Negativicutes → Acidaminococcales → Acidaminococcaceae → Phascolarctobacterium_A → Phascolarctobacterium_A succinatutens
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0172462
Biosample ID	N/A
Genome length (bp)	43,747 bps
CheckV completeness	82.32% (Medium-quality)
CDS count	58
CDS density	93.61%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_C → Negativicutes → Acidaminococcales → Acidaminococcaceae → Phascolarctobacterium_A → Phascolarctobacterium_A succinatutens	Total connections	242	Host agreement	71.9
PHIST-predicted host lineage	Bacteria → Firmicutes_C → Negativicutes → Acidaminococcales → Acidaminococcaceae → Phascolarctobacterium_A → Phascolarctobacterium_A succinatutens	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 82.32)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0172462_3	phrog_10691	1077.4	0	N/A	unknown function
UniRef90	UHGV-0172462_3	UniRef90_A0A316S9L9	2128.0	0	Helicase ATP-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0172462_3	1009370.ALO_12301	779.0	0	Type III restriction enzyme, res subunit	N/A
Pfam	UHGV-0172462_3	PF01464	N/A	N/A	Transglycosylase SLT domain	SLT
Pfam	UHGV-0172462_3	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0172462_3	PF18812	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
Pfam	UHGV-0172462_3	PF18857	N/A	N/A	Large polyvalent protein associated domain 38	LPD38
COG	UHGV-0172462_3	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
UniRef90	UHGV-0172462_5	UniRef90_A0A1G6NNF8	152.0	1.81e-40	Intein N-terminal splicing region	N/A
eggNOG-mapper	UHGV-0172462_5	1232428.CAVO010000067_gene416	162.0	2.8026e-45	N/A	N/A
structural_annotation	UHGV-0172462_6	PF00765,MF_02210,NF007644,COG2153	N/A	N/A	N/A	N/A
PHROG	UHGV-0172462_7	phrog_1807	74.9	1e-21	tail fiber protein	tail
UniRef90	UHGV-0172462_7	UniRef90_A0A1Q6R2G9	160.0	0	N/A	N/A
eggNOG-mapper	UHGV-0172462_7	1408428.JNJP01000079_gene3366	65.5	0.000000000232	N/A	N/A
Pfam	UHGV-0172462_7	PF14301	N/A	N/A	N/A	DUF4376
structural_annotation	UHGV-0172462_7	PF14301	N/A	N/A	N/A	N/A
PHROG	UHGV-0172462_8	phrog_19618	77.2	1.4e-22	tail collar protein	tail
UniRef90	UHGV-0172462_8	UniRef90_A0A354WRB2	134.0	1.5e-35	Collar domain-containing protein	N/A
eggNOG-mapper	UHGV-0172462_8	556269.ACDQ01000009_gene1944	128.0	3.6e-31	Phage Tail Collar Domain	N/A
Pfam	UHGV-0172462_8	PF07484	N/A	N/A	Phage Tail Collar Domain	Collar
COG	UHGV-0172462_8	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0172462_8	PF07484	N/A	N/A	N/A	N/A
PHROG	UHGV-0172462_9	phrog_697	42.4	0.0000000000024	structural protein	head and packaging
UniRef90	UHGV-0172462_9	UniRef90_A0A5C7JMC8	63.2	0.000000000857	Mtd_N domain-containing protein	N/A
eggNOG-mapper	UHGV-0172462_11	910314.HMPREF9220_1078	72.8	0.00000000000000389	N/A	N/A
structural_annotation	UHGV-0172462_11	PF16407,NF032891,COG5456	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0172462_13	1379858.N508_00283	77.4	0.00000000000452	N/A	N/A
structural_annotation	UHGV-0172462_13	PF11134,MF_00923,NF000022,COG4257	N/A	N/A	N/A	N/A
PHROG	UHGV-0172462_14	phrog_399	45.5	0.0000000000007	structural protein	head and packaging
structural_annotation	UHGV-0172462_14	PF20387	N/A	N/A	N/A	N/A
PHROG	UHGV-0172462_15	phrog_334	298.8	0	major head protein	head and packaging
UniRef90	UHGV-0172462_15	UniRef90_A0A316SB53	440.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0172462_15	401526.TcarDRAFT_1286	316.0	0	N/A	N/A
Pfam	UHGV-0172462_15	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0172462_15	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0172462_15	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0172462_18	phrog_156	440.3	0	portal protein	head and packaging
UniRef90	UHGV-0172462_18	UniRef90_F7NK66	504.0	0	Putative phage portal protein	N/A
eggNOG-mapper	UHGV-0172462_18	401526.TcarDRAFT_1284	536.0	0	Tfp pilus assembly protein FimV	N/A
COG	UHGV-0172462_18	COG3170	N/A	N/A	Type IV pilus assembly protein FimV	N/A
structural_annotation	UHGV-0172462_18	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
Pfam	UHGV-0172462_19	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
structural_annotation	UHGV-0172462_19	PF04327,NF011124,COG2868	N/A	N/A	N/A	N/A
KOfam	UHGV-0172462_20	K06909	257.8	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0172462_20	phrog_3717	229.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0172462_20	UniRef90_A0A316S7L1	756.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0172462_20	1009370.ALO_12436	590.0	0	Phage terminase, large subunit	N/A
Pfam	UHGV-0172462_20	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
NCBIFam	UHGV-0172462_20	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0172462_20	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0172462_20	PF04466,PF20454,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0172462_21	K07474	86.0	9.8e-25	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0172462_21	phrog_51	88.2	9.1e-26	terminase small subunit	head and packaging
UniRef90	UHGV-0172462_21	UniRef90_A0A1I0K7H5	100.0	1.83e-24	Phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0172462_21	1391647.AVSV01000003_gene1801	94.0	2.01e-22	Terminase small subunit	N/A
Pfam	UHGV-0172462_21	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0172462_21	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0172462_21	PF03592,COG3728	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0172462_22	1280689.AUJC01000003_gene960	49.7	0.00000221	N/A	N/A
PHROG	UHGV-0172462_23	phrog_374	45.4	0.000000000000039	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0172462_23	1469607.KK073765_gene6586	49.7	0.0000092	N/A	N/A
PHROG	UHGV-0172462_24	phrog_2329	72.6	3.2e-21	N/A	unknown function
UniRef90	UHGV-0172462_24	UniRef90_UPI001AEB4F95	67.4	0.000000000000128	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0172462_24	1120746.CCNL01000005_gene152	66.6	0.000000000000674	N/A	N/A
Pfam	UHGV-0172462_24	PF04014	N/A	N/A	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
structural_annotation	UHGV-0172462_24	PF04014,NF007312,COG2336	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0172462_25	401526.TcarDRAFT_1279	77.4	6.13e-16	phage transcriptional regulator, RinA family	N/A
structural_annotation	UHGV-0172462_25	PF05263,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0172462_26	phrog_190	145.5	2.8026e-43	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0172462_26	UniRef90_UPI0018C4B0C5	129.0	1.86e-36	N/A	N/A
eggNOG-mapper	UHGV-0172462_26	1347392.CCEZ01000043_gene417	121.0	5.61e-34	N/A	N/A
Pfam	UHGV-0172462_26	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0172462_26	PF06356	N/A	N/A	N/A	N/A
KOfam	UHGV-0172462_27	K03111	139.5	3.69999e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0172462_27	phrog_44	150.2	9.80909e-45	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0172462_27	UniRef90_R6WK64	248.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0172462_27	626939.HMPREF9443_01150	169.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0172462_27	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0172462_27	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0172462_27	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0172462_27	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0172462_27	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0172462_29	PF16857,MF_00273,NF001981,COG2157	N/A	N/A	N/A	N/A
PHROG	UHGV-0172462_33	phrog_9207	44.5	0.0000000000023	N/A	unknown function
PHROG	UHGV-0172462_35	phrog_2776	68.2	9.9e-20	N/A	unknown function
UniRef90	UHGV-0172462_35	UniRef90_A0A2S7ZCT0	89.7	1.6e-19	DNA repair protein MmcB-related protein	N/A
Pfam	UHGV-0172462_35	PF06319	N/A	N/A	DNA repair protein MmcB-like	MmcB-like
structural_annotation	UHGV-0172462_35	PF06319,NF033832,COG5321	N/A	N/A	N/A	N/A
UniRef90	UHGV-0172462_36	UniRef90_A0A6N7WVF3	55.8	0.000000317	Restriction endonuclease subunit S	N/A
eggNOG-mapper	UHGV-0172462_39	1232453.BAIF02000017_gene3154	48.5	0.00000472	C-5 cytosine-specific DNA methylase	N/A
Pfam	UHGV-0172462_39	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0172462_39	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
UniRef90	UHGV-0172462_41	UniRef90_A0A316S7J6	104.0	1.06e-24	Inhibitor_G39P domain-containing protein	N/A
eggNOG-mapper	UHGV-0172462_41	1280706.AUJE01000046_gene1152	66.6	0.0000000000486	N/A	N/A
structural_annotation	UHGV-0172462_41	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0172462_42	phrog_270	106.3	3.5e-31	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0172462_42	UniRef90_UPI0006877B23	116.0	7.67e-28	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0172462_42	742741.HMPREF9475_03963	109.0	1.45e-25	N/A	N/A
Pfam	UHGV-0172462_42	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0172462_42	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0172462_42	PF02295,MF_01819,TIGR04176,COG3355	N/A	N/A	N/A	N/A
PHROG	UHGV-0172462_43	phrog_72	62.0	9.2e-18	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0172462_43	1507.HMPREF0262_00432	114.0	9e-30	N/A	N/A
structural_annotation	UHGV-0172462_43	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0172462_44	phrog_7566	98.8	3e-29	N/A	unknown function
eggNOG-mapper	UHGV-0172462_44	508419.F8J187_9CAUD	82.4	2.22e-19	N/A	N/A
PHROG	UHGV-0172462_45	phrog_155	163.3	0	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0172462_45	UniRef90_A0A843HP81	191.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-0172462_45	386415.NT01CX_2192	171.0	0	ERF superfamily	N/A
Pfam	UHGV-0172462_45	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0172462_45	PF04404,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0172462_48	phrog_14367	48.4	0.000000000000064	N/A	unknown function
UniRef90	UHGV-0172462_48	UniRef90_R6WTN1	80.5	1.05e-17	Peptidoglycan-binding LysM	N/A
eggNOG-mapper	UHGV-0172462_48	478749.BRYFOR_06242	51.6	0.000000216	LysM domain	N/A
Pfam	UHGV-0172462_48	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-0172462_48	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0172462_48	MF_02014,NF010723	N/A	N/A	N/A	N/A
KOfam	UHGV-0172462_52	K22299	45.4	0.0000000000017	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0172462_52	phrog_8	46.2	0.00000000000097	transcriptional regulator	transcription regulation
UniRef90	UHGV-0172462_52	UniRef90_A0A4V0I2W7	50.4	0.00000118	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0172462_52	515622.bpr_I2741	52.8	0.000000386	IrrE N-terminal-like domain	N/A
PADLOC	UHGV-0172462_52	retron_type_VI_hth_cluster2_1	44.7	0.0000000000037	N/A	Retron
Pfam	UHGV-0172462_52	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0172462_52	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0172462_52	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0172462_53	K22300	64.9	1.8e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0172462_53	phrog_8	53.6	0.0000000000000052	transcriptional regulator	transcription regulation
UniRef90	UHGV-0172462_53	UniRef90_A0A645JJK5	70.9	0.0000000000000135	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0172462_53	246199.CUS_7322	55.1	0.0000000362	Helix-turn-helix	N/A
Pfam	UHGV-0172462_53	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0172462_53	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
KOfam	UHGV-0172462_54	K22300	71.0	2.5e-20	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0172462_54	phrog_8	64.8	1.5e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0172462_54	UniRef90_A0A1Q6R550	154.0	1.4013e-45	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0172462_54	580331.Thit_1413	67.0	0.00000000000253	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0172462_54	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0172462_54	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0172462_54	PF01381,MF_02017,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0172462_57	PF16747	N/A	N/A	N/A	N/A
KOfam	UHGV-0172462_58	K06400	387.4	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0172462_58	phrog_95	368.0	0	integrase	integration and excision
UniRef90	UHGV-0172462_58	UniRef90_E8LBZ4	418.0	0	Resolvase, N-terminal domain protein	N/A
eggNOG-mapper	UHGV-0172462_58	626939.HMPREF9443_00357	418.0	0	overlaps another CDS with the same product name	N/A
Pfam	UHGV-0172462_58	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0172462_58	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0172462_58	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0172462_58	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0172462_58	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0172462	Yes	43,747	45	82	1
UHGV-0200168	No	13,138	46	25	1