vOTU vOTU-028628

vOTU: vOTU-028628

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-028628
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium_P → Clostridium_P perfringens
Taxonomy (UHGV)	vFAM-00035 → vSUBFAM-05674 → vOTU-028628
Host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium_P → Clostridium_P perfringens
Host range breadth	Species
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-0172790
Biosample ID	SAMN07501040
Genome length (bp)	26,679 bps
CheckV completeness	79.14% (Medium-quality)
CDS count	39
CDS density	87.26%
tRNA count	1
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium_P → Clostridium_P perfringens	Total connections	25	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium_P → Clostridium_P perfringens	Total connections	15	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 79.14)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0172790_1	phrog_1067	345.6	0	minor head protein	head and packaging
UniRef90	UHGV-0172790_1	UniRef90_UPI001EDCB99B	1005.0	0	NlpC/P60 family protein	N/A
eggNOG-mapper	UHGV-0172790_1	190478.Q8SBN9_9CAUD	648.0	0	peptidoglycan catabolic process	N/A
Pfam	UHGV-0172790_1	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0172790_1	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
structural_annotation	UHGV-0172790_1	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0172790_2	phrog_33	80.9	2.7e-23	distal tail protein Dit	tail
UniRef90	UHGV-0172790_2	UniRef90_A0A2Z3TT43	471.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0172790_2	999411.HMPREF1092_03310	117.0	1.39e-29	N/A	N/A
Pfam	UHGV-0172790_2	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-0172790_2	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0172790_2	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0172790_2	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0172790_3	phrog_991	271.7	0	tail length tape measure protein	tail
UniRef90	UHGV-0172790_3	UniRef90_UPI00096A2576	1162.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0172790_3	190478.Q8SBP1_9CAUD	802.0	0	peptidoglycan catabolic process	N/A
Pfam	UHGV-0172790_3	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0172790_3	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
structural_annotation	UHGV-0172790_3	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0172790_4	phrog_25901	49.1	0.00000000000013	N/A	unknown function
PHROG	UHGV-0172790_5	phrog_13494	101.1	6.1e-30	N/A	unknown function
UniRef90	UHGV-0172790_5	UniRef90_Q8SBP2	126.0	8.48e-36	Gp12 protein	N/A
eggNOG-mapper	UHGV-0172790_5	195103.CPF_1578	81.3	1.24e-18	N/A	N/A
structural_annotation	UHGV-0172790_5	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-0172790_6	phrog_88	134.7	5.5e-40	major tail protein	tail
UniRef90	UHGV-0172790_6	UniRef90_A0A2Z3TTW9	370.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0172790_6	411459.RUMOBE_01728	186.0	0	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0172790_6	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-0172790_6	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0172790_6	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0172790_7	phrog_78	76.9	3e-22	tail terminator	connector
UniRef90	UHGV-0172790_7	UniRef90_Q8SBP4	162.0	0	Gp10 protein	N/A
eggNOG-mapper	UHGV-0172790_7	195103.CPF_1580	139.0	4.27004e-41	N/A	N/A
structural_annotation	UHGV-0172790_7	PF05657,NF040576,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0172790_8	phrog_5	43.4	0.0000000000079	tail completion or Neck1 protein	connector
UniRef90	UHGV-0172790_8	UniRef90_A0A2X2Y2U7	302.0	0	HK97 family phage protein	N/A
eggNOG-mapper	UHGV-0172790_8	195103.CPF_1581	183.0	0	Phage protein, HK97 gp10 family	N/A
NCBIFam	UHGV-0172790_8	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0172790_8	PF04883,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0172790_9	phrog_25	59.9	4.7e-17	head closure Hc1	connector
UniRef90	UHGV-0172790_9	UniRef90_I2E8V6	223.0	0	Gp8	N/A
eggNOG-mapper	UHGV-0172790_9	195103.CPF_1582	194.0	0	Phage head-tail adaptor	N/A
Pfam	UHGV-0172790_9	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0172790_9	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0172790_9	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0172790_10	phrog_40	41.1	0.000000000028	head-tail adaptor Ad1	connector
UniRef90	UHGV-0172790_10	UniRef90_A0A2X2Y0S5	175.0	0	N/A	N/A
eggNOG-mapper	UHGV-0172790_10	394503.Ccel_2955	68.6	0.0000000000000651	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-0172790_10	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
NCBIFam	UHGV-0172790_10	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0172790_10	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0172790_11	phrog_10	133.8	1.7e-39	major head protein	head and packaging
UniRef90	UHGV-0172790_11	UniRef90_I2E8V4	642.0	0	Gp6	N/A
eggNOG-mapper	UHGV-0172790_11	1262449.CP6013_1042	349.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0172790_11	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0172790_11	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0172790_11	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0172790_11	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0172790_12	K06904	107.4	1.9e-31	N/A	N/A
PHROG	UHGV-0172790_12	phrog_80	135.5	5.70001e-40	head maturation protease	head and packaging
UniRef90	UHGV-0172790_12	UniRef90_I2E8Y9	427.0	0	Gp5	N/A
eggNOG-mapper	UHGV-0172790_12	1187894.I2E8Y9_9CAUD	427.0	0	peptidase activity	N/A
Pfam	UHGV-0172790_12	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
structural_annotation	UHGV-0172790_12	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0172790_13	phrog_12	190.7	0	portal protein	head and packaging
UniRef90	UHGV-0172790_13	UniRef90_I2E8V3	763.0	0	Gp4	N/A
eggNOG-mapper	UHGV-0172790_13	1195236.CTER_5113	354.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0172790_13	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0172790_13	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0172790_13	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0172790_13	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0172790_14	phrog_9	328.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0172790_14	UniRef90_I2E8V1	1065.0	0	Gp2	N/A
eggNOG-mapper	UHGV-0172790_14	1187894.I2E8V1_9CAUD	1065.0	0	Phage Terminase	N/A
Pfam	UHGV-0172790_14	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0172790_14	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
structural_annotation	UHGV-0172790_14	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0172790_15	phrog_83	98.5	7.2e-29	terminase small subunit	head and packaging
UniRef90	UHGV-0172790_15	UniRef90_I2E8V0	246.0	0	Gp1	N/A
eggNOG-mapper	UHGV-0172790_15	903814.ELI_3118	109.0	4.28e-29	Phage terminase, small subunit	N/A
Pfam	UHGV-0172790_15	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
NCBIFam	UHGV-0172790_15	TIGR01558.1	N/A	N/A	phage terminase small subunit P27 family	N/A
COG	UHGV-0172790_15	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0172790_15	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0172790_16	phrog_144	69.2	6.8e-20	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0172790_16	UniRef90_A0A2X3AD31	238.0	0	HNH endonuclease domain-containing protein	N/A
eggNOG-mapper	UHGV-0172790_16	1195236.CTER_5117	110.0	6.34e-29	HNH endonuclease	N/A
COG	UHGV-0172790_16	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
KOfam	UHGV-0172790_18	K04763	227.1	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0172790_18	phrog_1	157.6	0	integrase	integration and excision
UniRef90	UHGV-0172790_18	UniRef90_A0A2X2Y9N3	534.0	0	Integrase/recombinase	N/A
eggNOG-mapper	UHGV-0172790_18	1443122.Z958_p0023	218.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0172790_18	PF02899	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
Pfam	UHGV-0172790_18	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0172790_18	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0172790_18	PF00589,PF13495,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0172790_19	phrog_2428	100.7	9.9e-30	N/A	unknown function
UniRef90	UHGV-0172790_19	UniRef90_UPI001ABA75AF	239.0	0	ABC transporter ATPase	N/A
eggNOG-mapper	UHGV-0172790_19	272562.CA_C1899	162.0	0	N/A	N/A
dbAPIS	UHGV-0172790_19	APIS024	N/A	N/A	Tad1 proteins are not an enzymes, but are 'sponges' that bind and sequester the immune signaling molecule (cyclic ADP-ribose or gcADPR) produced by TIR-domain proteins, thus decoupling phage sensing from immune effector activation and rendering Thoeris inactive.	N/A
PHROG	UHGV-0172790_20	phrog_31395	136.6	3.50002e-41	N/A	unknown function
PHROG	UHGV-0172790_23	phrog_36	83.2	3.5e-24	transcriptional regulator	transcription regulation
UniRef90	UHGV-0172790_23	UniRef90_UPI001D0F667B	301.0	0	RinA family protein	N/A
eggNOG-mapper	UHGV-0172790_23	1415775.U729_2595	258.0	0	sigma factor activity	N/A
COG	UHGV-0172790_23	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0172790_23	PF05263,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0172790_25	phrog_98	104.6	7.4e-31	N/A	unknown function
UniRef90	UHGV-0172790_25	UniRef90_UPI001D11D1DA	266.0	0	YopX family protein	N/A
eggNOG-mapper	UHGV-0172790_25	431943.CKL_3302	112.0	2.92e-30	YopX protein	N/A
Pfam	UHGV-0172790_25	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0172790_25	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0172790_25	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0172790_29	phrog_7882	91.9	7.5e-27	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0172790_29	UniRef90_UPI00096ACAD6	344.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0172790_29	1128398.Curi_c22080	105.0	1.83e-25	Helix-turn-helix domain	N/A
Pfam	UHGV-0172790_29	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0172790_29	COG0640	N/A	N/A	DNA-binding transcriptional regulator, ArsR family	N/A
structural_annotation	UHGV-0172790_29	PF07106,MF_01177,NF040642,COG0640	N/A	N/A	N/A	N/A
PHROG	UHGV-0172790_31	phrog_16446	116.9	6.8e-35	N/A	unknown function
UniRef90	UHGV-0172790_32	UniRef90_UPI0009D6878B	133.0	1.42e-39	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0172790_32	1196322.A370_05750	77.8	3.21e-18	Helix-turn-helix domain	N/A
Pfam	UHGV-0172790_32	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
structural_annotation	UHGV-0172790_32	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
UniRef90	UHGV-0172790_33	UniRef90_UPI0018837974	86.7	2.49e-20	ubiquitin	N/A
eggNOG-mapper	UHGV-0172790_33	1391647.AVSV01000003_gene1781	97.8	1.49e-25	N/A	N/A
PHROG	UHGV-0172790_34	phrog_1760	125.0	5.5e-37	anti-termination protein	transcription regulation
UniRef90	UHGV-0172790_34	UniRef90_UPI001D10C35A	535.0	0	ORF6N domain-containing protein	N/A
eggNOG-mapper	UHGV-0172790_34	1280689.AUJC01000003_gene927	363.0	0	ORF6N domain	N/A
Pfam	UHGV-0172790_34	PF10543	N/A	N/A	ORF6N domain	ORF6N
COG	UHGV-0172790_34	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-0172790_34	PF10543,TIGR02681,COG3646	N/A	N/A	N/A	N/A
UniRef90	UHGV-0172790_35	UniRef90_UPI001D10E2A2	122.0	1.43e-35	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0172790_35	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0172790_35	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
KOfam	UHGV-0172790_36	K18830	50.9	0.000000000000021	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0172790_36	phrog_8	54.1	0.000000000000004	transcriptional regulator	transcription regulation
UniRef90	UHGV-0172790_36	UniRef90_UPI0009D697F5	214.0	0	helix-turn-helix domain-containing protein	N/A
PADLOC	UHGV-0172790_36	retron_type_VI_hth_cluster2_1	47.3	0.00000000000035	N/A	Retron
Pfam	UHGV-0172790_36	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0172790_36	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0172790_36	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0172790_37	K14059	303.4	0	int; integrase	N/A
PHROG	UHGV-0172790_37	phrog_1	251.8	0	integrase	integration and excision
UniRef90	UHGV-0172790_37	UniRef90_B1BPM9	718.0	0	Prophage LambdaCh01, site-specific recombinase, phage integrase family	N/A
eggNOG-mapper	UHGV-0172790_37	1211817.CCAT010000003_gene274	443.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0172790_37	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-0172790_37	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0172790_37	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0172790_37	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0172790_37	PF00589,PF14659,PF14657,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0172790_39	K06936	73.5	2e-21	raSEA; archaeosine synthase beta-subunit [EC:2.6.1.-]	N/A
UniRef90	UHGV-0172790_39	UniRef90_Q8XIW2	468.0	0	Elp3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0172790_39	195103.CPF_2258	468.0	0	Elongator protein 3, MiaB family, Radical SAM	N/A
COG	UHGV-0172790_39	COG1244	N/A	N/A	Archaeosine formation enzyme, radical SAM superfamily	N/A
structural_annotation	UHGV-0172790_39	MF_03128,TIGR01210,COG1244	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0172790	Yes	26,679	27	79	1
UHGV-1741060	No	14,762	28	44	1