vOTU vOTU-028778

vOTU: vOTU-028778

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-028778
Number of genomes	2
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00025 → vOTU-028778
Host lineage	Bacteria → Firmicutes → Bacilli → RF39 → UBA660 → CAG-433 → CAG-433 sp000433675
Host range breadth	Species
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0133109
Biosample ID	SAMN04329780
Genome length (bp)	25,628 bps
CheckV completeness	64.84% (Medium-quality)
CDS count	39
CDS density	96.73%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → RF39 → UBA660 → CAG-433 → CAG-433 sp000433675	Total connections	20	Host agreement	85
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 64.84)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0133109_1	720554.Clocl_0644	77.0	0.00000000000322	N/A	N/A
Pfam	UHGV-0133109_1	PF18975	N/A	N/A	N/A	DUF5711
KOfam	UHGV-0133109_7	K01160	53.7	0.0000000000000062	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0133109_7	phrog_34	61.7	1.5e-17	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0133109_7	UniRef90_A0A1M5PWH2	91.7	1.27e-21	Endodeoxyribonuclease RusA	N/A
COG	UHGV-0133109_7	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0133109_7	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0133109_10	phrog_1233	44.7	0.0000000000022	N/A	unknown function
UniRef90	UHGV-0133109_10	UniRef90_R7IWF8	111.0	1.91e-29	Peptidase_M78 domain-containing protein	N/A
Pfam	UHGV-0133109_10	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
structural_annotation	UHGV-0133109_10	PF13058	N/A	N/A	N/A	N/A
KOfam	UHGV-0133109_11	K03497	42.0	0.000000000005	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0133109_11	phrog_498	162.1	0	DNA methyltransferase	other
UniRef90	UHGV-0133109_11	UniRef90_A0A349YQ89	192.0	0	DNA methylase	N/A
eggNOG-mapper	UHGV-0133109_11	1131462.DCF50_p1401	177.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
PADLOC	UHGV-0133109_11	MTase_II_00015	139.7	2.50006e-41	Type II methyltransferase	RM
Pfam	UHGV-0133109_11	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0133109_11	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0133109_11	PF02195,TIGR00180,COG5119	N/A	N/A	N/A	N/A
PHROG	UHGV-0133109_12	phrog_842	226.5	0	beta-glucosyl-HMC-alpha-glucosyltransferase	other
eggNOG-mapper	UHGV-0133109_12	508419.F8J156_9CAUD	209.0	0	N/A	N/A
Pfam	UHGV-0133109_12	PF20691	N/A	N/A	TET-Associated Glycosyltransferase	TAGT
structural_annotation	UHGV-0133109_12	PF20691,NF041865,COG1216	N/A	N/A	N/A	N/A
PHROG	UHGV-0133109_13	phrog_2412	44.1	0.000000000000082	N/A	unknown function
UniRef90	UHGV-0133109_13	UniRef90_R5AAQ5	60.5	0.00000000244	N/A	N/A
eggNOG-mapper	UHGV-0133109_13	556268.OFAG_00320	74.7	0.00000000000000141	N/A	N/A
Pfam	UHGV-0133109_13	PF10685	N/A	N/A	Stress-induced bacterial acidophilic repeat motif	KGG
KOfam	UHGV-0133109_14	K06909	379.1	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0133109_14	phrog_5653	168.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0133109_14	UniRef90_A0A0R3JYL5	558.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0133109_14	203119.Cthe_2474	553.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0133109_14	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0133109_14	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0133109_14	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0133109_14	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0133109_14	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0133109_15	K16698	40.7	0.000000000037	tuaG; teichuronic acid biosynthesis glycosyltransferase TuaG [EC:2.4.-.-]	N/A
Pfam	UHGV-0133109_15	PF00535	N/A	N/A	Glycosyl transferase family 2	Glycos_transf_2
COG	UHGV-0133109_15	COG0463	N/A	N/A	Glycosyltransferase involved in cell wall bisynthesis	N/A
PHROG	UHGV-0133109_18	phrog_64	232.9	0	portal protein	head and packaging
UniRef90	UHGV-0133109_18	UniRef90_R6I230	392.0	0	SPP1 family phage portal protein	N/A
eggNOG-mapper	UHGV-0133109_18	665956.HMPREF1032_03614	299.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0133109_18	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0133109_18	PF05133,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
UniRef90	UHGV-0133109_19	UniRef90_R5MSH4	178.0	0	Phage head morphogenesis protein SPP1 gp7 family	N/A
NCBIFam	UHGV-0133109_19	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-0133109_19	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0133109_19	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0133109_20	phrog_172	102.9	3.6e-30	head scaffolding protein	head and packaging
UniRef90	UHGV-0133109_20	UniRef90_A0A3D1PKZ2	100.0	4.39e-23	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0133109_20	1280689.AUJC01000003_gene966	90.9	6.56e-20	N/A	N/A
Pfam	UHGV-0133109_20	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-0133109_20	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0133109_21	phrog_422	194.4	0	major head protein	head and packaging
UniRef90	UHGV-0133109_21	UniRef90_A0A844FIN2	277.0	0	Cadherin domain-containing protein	N/A
eggNOG-mapper	UHGV-0133109_21	642492.Clole_0872	270.0	0	N/A	N/A
structural_annotation	UHGV-0133109_21	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0133109_23	PF05135,TIGR01560	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0133109_24	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0133109_25	phrog_5	40.3	0.000000000078	tail completion or Neck1 protein	connector
Pfam	UHGV-0133109_25	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0133109_26	PF09646	N/A	N/A	N/A	N/A
PHROG	UHGV-0133109_27	phrog_158	52.5	0.00000000000001	major tail protein	tail
UniRef90	UHGV-0133109_27	UniRef90_UPI00096A5D14	82.0	3.31e-17	phage tail protein	N/A
eggNOG-mapper	UHGV-0133109_27	445974.CLORAM_02924	82.0	6.14e-18	Phage tail tube protein, TTP	N/A
structural_annotation	UHGV-0133109_27	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-0133109_28	UniRef90_UPI0005AA54D3	53.9	0.000000701	N/A	N/A
eggNOG-mapper	UHGV-0133109_28	1499683.CCFF01000017_gene2925	53.9	0.000000118	N/A	N/A
structural_annotation	UHGV-0133109_28	PF19591	N/A	N/A	N/A	N/A
PHROG	UHGV-0133109_30	phrog_1535	208.0	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0133109_30	1158612.I580_01921	107.0	6.88e-21	SLT domain	N/A
COG	UHGV-0133109_30	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0133109_31	phrog_1194	46.7	0.00000000000045	N/A	unknown function
Pfam	UHGV-0133109_31	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0133109_31	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0133109_32	phrog_13879	92.8	1.6e-29	N/A	unknown function
eggNOG-mapper	UHGV-0133109_32	1122919.KB905559_gene1344	77.8	0.00000000000453	N/A	N/A
structural_annotation	UHGV-0133109_32	PF14594,PF00754,NF033848,COG3500,COG5156	N/A	N/A	N/A	N/A
KOfam	UHGV-0133109_36	K16628	61.9	1.9e-18	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-0133109_36	phrog_819	123.0	2.9e-36	tail protein	tail
eggNOG-mapper	UHGV-0133109_36	546273.VEIDISOL_01078	68.9	0.00000000371	cell wall organization	N/A
Pfam	UHGV-0133109_36	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0133109_36	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-0133109_36	PF10651	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0133109_39	PF08281	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0133109	Yes	25,628	28	65	1
UHGV-0174770	No	15,663	28	40	1