vOTU vOTU-028785

vOTU: vOTU-028785

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-028785
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00005 → vOTU-028785
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → ER4 → ER4 sp000765235
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0174829
Biosample ID	SAMN09781726
Genome length (bp)	24,247 bps
CheckV completeness	57.92% (Medium-quality)
CDS count	44
CDS density	88.66%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → ER4 → ER4 sp000765235	Total connections	219	Host agreement	83.56
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 57.92)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0174829_1	phrog_434	214.3	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0174829_1	UniRef90_UPI001BB47349	318.0	0	YqaJ viral recombinase family protein	N/A
eggNOG-mapper	UHGV-0174829_1	1226322.HMPREF1545_00014	315.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-0174829_1	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0174829_1	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0174829_1	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
PHROG	UHGV-0174829_3	phrog_22529	93.9	9.8e-28	N/A	unknown function
UniRef90	UHGV-0174829_3	UniRef90_A0A352RPR8	140.0	3.25e-39	3D domain-containing protein	N/A
eggNOG-mapper	UHGV-0174829_3	1304866.K413DRAFT_1950	108.0	1.31e-26	3D domain protein	N/A
Pfam	UHGV-0174829_3	PF06725	N/A	N/A	3D domain	3D
COG	UHGV-0174829_3	COG3584	N/A	N/A	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	N/A
structural_annotation	UHGV-0174829_3	PF06725,MF_02071,NF040670,COG3584	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0174829_5	760568.Desku_0919	104.0	2.83e-25	N/A	N/A
structural_annotation	UHGV-0174829_5	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
PHROG	UHGV-0174829_6	phrog_8	44.2	0.0000000000045	transcriptional regulator	transcription regulation
UniRef90	UHGV-0174829_6	UniRef90_N9Z4Q7	52.0	0.000000241	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0174829_6	742740.HMPREF9474_03481	52.0	0.000000214	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0174829_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0174829_6	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-0174829_6	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
Pfam	UHGV-0174829_8	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0174829_8	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0174829_8	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0174829_9	K07449	111.2	4.4e-33	K07449; similar to archaeal holliday junction resolvase and Mrr protein	N/A
PHROG	UHGV-0174829_9	phrog_19856	61.8	6.5e-18	N/A	unknown function
UniRef90	UHGV-0174829_9	UniRef90_UPI00068633D6	150.0	7.62993e-41	restriction endonuclease	N/A
eggNOG-mapper	UHGV-0174829_9	1280696.ATVY01000073_gene1217	119.0	1.13e-30	Restriction endonuclease	N/A
PADLOC	UHGV-0174829_9	ZorD1_00005	50.9	0.000000000000022	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
Pfam	UHGV-0174829_9	PF04471	N/A	N/A	Restriction endonuclease	Mrr_cat
COG	UHGV-0174829_9	COG1787	N/A	N/A	Endonuclease, HJR/Mrr/RecB family	N/A
UniRef90	UHGV-0174829_10	UniRef90_A0A3D3Y0G5	93.6	1.47e-21	HTH cro/C1-type domain-containing protein	N/A
structural_annotation	UHGV-0174829_10	PF01381,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
Pfam	UHGV-0174829_14	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0174829_14	COG4636	N/A	N/A	Endonuclease, Uma2 family (restriction endonuclease fold)	N/A
structural_annotation	UHGV-0174829_14	PF01381,MF_02017,TIGR03070,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0174829_15	K14059	194.8	0	int; integrase	N/A
PHROG	UHGV-0174829_15	phrog_1	173.1	0	integrase	integration and excision
UniRef90	UHGV-0174829_15	UniRef90_UPI001EDE32BF	494.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0174829_15	1226322.HMPREF1545_00144	319.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0174829_15	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0174829_15	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0174829_15	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0174829_16	1232443.BAIA02000078_gene6	60.1	0.000000000415	N/A	N/A
structural_annotation	UHGV-0174829_17	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-0174829_18	phrog_20016	177.4	0	N/A	unknown function
UniRef90	UHGV-0174829_18	UniRef90_A0A285PT46	193.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0174829_18	397290.C810_05214	159.0	0	N/A	N/A
structural_annotation	UHGV-0174829_18	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0174829_19	phrog_16490	142.5	5.19882e-43	N/A	unknown function
eggNOG-mapper	UHGV-0174829_19	1408437.JNJN01000043_gene803	141.0	1.22e-38	N/A	N/A
PHROG	UHGV-0174829_20	phrog_22984	74.2	1.6e-21	N/A	unknown function
PHROG	UHGV-0174829_21	phrog_21718	109.0	4.1e-32	N/A	unknown function
eggNOG-mapper	UHGV-0174829_21	397290.C810_05210	66.6	0.0000000000118	N/A	N/A
UniRef90	UHGV-0174829_25	UniRef90_A0A8D9PDQ3	85.5	2.09e-20	ECF sigma factor	N/A
structural_annotation	UHGV-0174829_25	PF04545,MF_00674,NF009179,COG1342	N/A	N/A	N/A	N/A
KOfam	UHGV-0174829_26	K17733	94.7	1e-27	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	N/A
PHROG	UHGV-0174829_26	phrog_6523	75.6	9.8e-22	endolysin	lysis
UniRef90	UHGV-0174829_26	UniRef90_R5RXG6	226.0	0	Serine-type D-Ala-D-Ala carboxypeptidase	N/A
eggNOG-mapper	UHGV-0174829_26	1519439.JPJG01000023_gene536	218.0	0	D-alanyl-D-alanine carboxypeptidase	N/A
Pfam	UHGV-0174829_26	PF13539	N/A	N/A	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
COG	UHGV-0174829_26	COG1876	N/A	N/A	LD-carboxypeptidase LdcB, LAS superfamily	N/A
structural_annotation	UHGV-0174829_26	PF02557,MF_01924,NF000380,COG1876	N/A	N/A	N/A	N/A
PHROG	UHGV-0174829_27	phrog_13256	54.2	0.0000000000000017	N/A	unknown function
eggNOG-mapper	UHGV-0174829_27	1519439.JPJG01000060_gene1898	73.6	1.08e-16	N/A	N/A
PHROG	UHGV-0174829_29	phrog_4105	40.7	0.000000000046	N/A	unknown function
eggNOG-mapper	UHGV-0174829_32	1519439.JPJG01000060_gene1892	114.0	2.59e-24	Collagen triple helix repeat (20 copies)	N/A
COG	UHGV-0174829_32	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
eggNOG-mapper	UHGV-0174829_34	1519439.JPJG01000060_gene1895	147.0	5.08952e-42	N/A	N/A
structural_annotation	UHGV-0174829_34	PF10618	N/A	N/A	N/A	N/A
PHROG	UHGV-0174829_36	phrog_21962	50.0	0.0000000000000049	tail protein	tail
UniRef90	UHGV-0174829_36	UniRef90_A0A858MRS5	71.2	0.0000000011	Putative tail fiber protein	N/A
eggNOG-mapper	UHGV-0174829_36	1519439.JPJG01000060_gene1892	256.0	0	Collagen triple helix repeat (20 copies)	N/A
Pfam	UHGV-0174829_36	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0174829_36	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
eggNOG-mapper	UHGV-0174829_38	1235792.C808_02151	57.8	0.000001	Listeria-Bacteroides repeat domain (List_Bact_rpt)	N/A
COG	UHGV-0174829_38	COG2247	N/A	N/A	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	N/A
structural_annotation	UHGV-0174829_38	PF21605,NF041825,COG3198	N/A	N/A	N/A	N/A
UniRef90	UHGV-0174829_39	UniRef90_A0A810QCC8	157.0	4.46e-40	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0174829_39	1235797.C816_04179	213.0	0	Chaperone of endosialidase	N/A
structural_annotation	UHGV-0174829_39	PF14594	N/A	N/A	N/A	N/A
PHROG	UHGV-0174829_40	phrog_6616	44.3	0.0000000000011	tail protein	tail
UniRef90	UHGV-0174829_40	UniRef90_A0A2Z4QA17	260.0	0	KID repeat-containing protein	N/A
eggNOG-mapper	UHGV-0174829_40	1235797.C816_04180	309.0	0	N/A	N/A
structural_annotation	UHGV-0174829_40	PF21683,TIGR02126,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0174829_41	phrog_1194	84.4	1.2e-24	N/A	unknown function
eggNOG-mapper	UHGV-0174829_41	1232443.BAIA02000078_gene17	124.0	4.76e-35	N/A	N/A
Pfam	UHGV-0174829_41	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0174829_41	PF20458,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0174829_42	phrog_1535	99.6	0	tail length tape measure protein	tail
UniRef90	UHGV-0174829_42	UniRef90_A0A810PX76	159.0	2.07e-37	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0174829_42	1235797.C816_04182	280.0	0	SLT domain	N/A
COG	UHGV-0174829_42	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0174829_42	PF05546,TIGR02559	N/A	N/A	N/A	N/A
PHROG	UHGV-0174829_43	phrog_706	122.8	2.6e-36	N/A	unknown function
UniRef90	UHGV-0174829_43	UniRef90_UPI000682A80B	244.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0174829_43	693746.OBV_18170	230.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0174829_43	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0174829_43	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0174829_44	phrog_11299	86.1	4.5e-25	N/A	unknown function
eggNOG-mapper	UHGV-0174829_44	693746.OBV_18160	102.0	6.37e-26	N/A	N/A
structural_annotation	UHGV-0174829_44	PF10666	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0174829	Yes	24,247	53	58	1
UHGV-0192468	No	17,166	54	40	1