vOTU vOTU-028795

vOTU: vOTU-028795

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-028795
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00005 → vGENUS-00517 → vOTU-028795
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83
Host range breadth	Genus
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1397598
Biosample ID	SAMN06348190
Genome length (bp)	29,403 bps
CheckV completeness	73.89% (Medium-quality)
CDS count	44
CDS density	93.28%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83	Total connections	216	Host agreement	73.15
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales	Total connections	2	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 73.89)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1397598_3	phrog_155	88.8	7e-26	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1397598_3	UniRef90_A0A1C6J8G0	261.0	0	ERF superfamily	N/A
eggNOG-mapper	UHGV-1397598_3	1268072.PSAB_05935	177.0	0	ERF superfamily	N/A
Pfam	UHGV-1397598_3	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-1397598_3	PF04404,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-1397598_4	phrog_72	48.7	0.000000000000017	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1397598_4	UniRef90_A0A8D9PDS2	261.0	0	NinB protein	N/A
eggNOG-mapper	UHGV-1397598_4	445972.ANACOL_01825	147.0	1.66054e-42	N/A	N/A
structural_annotation	UHGV-1397598_4	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-1397598_5	phrog_7566	92.1	3.5e-27	N/A	unknown function
UniRef90	UHGV-1397598_5	UniRef90_A0A8D9UHC0	141.0	4.34963e-42	Recombination enhancement function protein nuclease	N/A
eggNOG-mapper	UHGV-1397598_5	693746.OBV_25470	116.0	1.55e-32	N/A	N/A
KOfam	UHGV-1397598_6	K03111	116.6	3.4e-34	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1397598_6	phrog_44	118.9	4.2e-35	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1397598_6	UniRef90_A0A810PUK9	234.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1397598_6	1203606.HMPREF1526_01880	110.0	1.64e-29	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1397598_6	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1397598_6	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1397598_6	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1397598_6	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1397598_6	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1397598_7	phrog_15768	80.0	2.4e-24	N/A	unknown function
UniRef90	UHGV-1397598_7	UniRef90_A0A8D9PDU3	134.0	1.28e-35	N/A	N/A
eggNOG-mapper	UHGV-1397598_7	203119.Cthe_2466	89.4	3.8e-18	N/A	N/A
Pfam	UHGV-1397598_7	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-1397598_7	PF19808	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1397598_8	TIGR00122,COG1654	N/A	N/A	N/A	N/A
KOfam	UHGV-1397598_10	K01160	61.8	1.9e-17	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1397598_10	phrog_34	52.7	0.0000000000000083	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1397598_10	UniRef90_UPI0018ABA1B6	151.0	7.00649e-45	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1397598_10	796940.HMPREF9628_00163	113.0	9.82e-31	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1397598_10	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1397598_10	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1397598_10	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-1397598_12	K00571	126.4	2.7e-37	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1397598_12	phrog_67	109.2	2.6e-32	DNA methyltransferase	other
UniRef90	UHGV-1397598_12	UniRef90_A0A2U1CFM2	423.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-1397598_12	658655.HMPREF0988_00878	369.0	0	DNA methylase	N/A
PADLOC	UHGV-1397598_12	MTase_II_00157	99.9	4.4e-29	Type II methyltransferase	RM
Pfam	UHGV-1397598_12	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1397598_12	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1397598_12	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-1397598_13	phrog_22529	116.1	1.6e-34	N/A	unknown function
UniRef90	UHGV-1397598_13	UniRef90_A0A810Q1V0	196.0	0	3D domain-containing protein	N/A
eggNOG-mapper	UHGV-1397598_13	411463.EUBVEN_00667	106.0	2.19e-26	3D domain	N/A
Pfam	UHGV-1397598_13	PF06725	N/A	N/A	3D domain	3D
COG	UHGV-1397598_13	COG3584	N/A	N/A	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	N/A
structural_annotation	UHGV-1397598_13	PF06725,NF040670,COG3584	N/A	N/A	N/A	N/A
KOfam	UHGV-1397598_16	K00571	187.7	0	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1397598_16	phrog_67	228.2	0	DNA methyltransferase	other
UniRef90	UHGV-1397598_16	UniRef90_A0A1C6E635	474.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-1397598_16	1166018.FAES_1810	352.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
PADLOC	UHGV-1397598_16	MTase_II_00173	362.7	0	Type II methyltransferase	RM
Pfam	UHGV-1397598_16	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1397598_16	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1397598_16	PF01555,NF008572,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-1397598_17	phrog_38832	51.9	7.8e-16	N/A	unknown function
eggNOG-mapper	UHGV-1397598_17	665956.HMPREF1032_00143	59.3	0.00000000943	N/A	N/A
PHROG	UHGV-1397598_18	phrog_3136	137.1	5.60001e-41	N/A	unknown function
UniRef90	UHGV-1397598_18	UniRef90_A0A6N7TMC2	142.0	8.22999e-40	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1397598_18	642492.Clole_1416	55.1	0.000000225	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-1397598_18	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-1397598_18	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-1397598_19	phrog_2131	108.1	4.6e-32	N/A	unknown function
UniRef90	UHGV-1397598_19	UniRef90_O34053	114.0	1.03e-29	ORF22	N/A
eggNOG-mapper	UHGV-1397598_19	85154.O34053_BPO12	114.0	1.74e-30	N/A	N/A
eggNOG-mapper	UHGV-1397598_21	693746.OBV_18010	120.0	8.75e-33	N/A	N/A
structural_annotation	UHGV-1397598_21	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-1397598_25	phrog_606	81.5	1e-23	terminase small subunit	head and packaging
UniRef90	UHGV-1397598_25	UniRef90_UPI00195648BB	175.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-1397598_25	397290.C810_05185	147.0	4.1058e-43	DNA-packaging protein gp3	N/A
Pfam	UHGV-1397598_25	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-1397598_25	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-1397598_26	K06909	148.2	7.14662e-44	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1397598_26	phrog_10250	179.0	0	N/A	unknown function
UniRef90	UHGV-1397598_26	UniRef90_A0A3D3Y0N9	501.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1397598_26	1226322.HMPREF1545_00043	437.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-1397598_26	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-1397598_26	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-1397598_26	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1397598_26	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1397598_26	PF04466,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1397598_27	phrog_64	168.6	0	portal protein	head and packaging
UniRef90	UHGV-1397598_27	UniRef90_UPI0018A8A301	594.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1397598_27	1235800.C819_02239	88.6	5.25e-16	phage portal protein, SPP1	N/A
Pfam	UHGV-1397598_27	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1397598_27	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-1397598_28	phrog_115	112.5	2.1e-33	minor head protein	head and packaging
UniRef90	UHGV-1397598_28	UniRef90_A0A810PSD3	616.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-1397598_28	1111135.HMPREF1248_0663	189.0	0	cell adhesion	N/A
Pfam	UHGV-1397598_28	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-1397598_28	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-1397598_28	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1397598_28	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1397598_29	phrog_5	66.7	5.1e-19	tail completion or Neck1 protein	connector
UniRef90	UHGV-1397598_29	UniRef90_A0A4D7AJK9	186.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1397598_29	386415.NT01CX_2170	103.0	8.37e-27	N/A	N/A
Pfam	UHGV-1397598_29	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-1397598_29	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1397598_30	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1397598_31	phrog_544	296.1	0	major head protein	head and packaging
UniRef90	UHGV-1397598_31	UniRef90_UPI0019576143	400.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-1397598_31	411471.SUBVAR_06940	386.0	0	N/A	N/A
NCBIFam	UHGV-1397598_31	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-1397598_31	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1397598_33	phrog_17977	79.2	3.5e-23	N/A	unknown function
UniRef90	UHGV-1397598_33	UniRef90_A0A285PT57	94.7	8.36e-23	Phage head-tail joining protein	N/A
structural_annotation	UHGV-1397598_33	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1397598_34	phrog_17405	45.5	0.0000000000012	head protein	head and packaging
structural_annotation	UHGV-1397598_34	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-1397598_35	phrog_885	86.4	2.8e-25	major tail protein	tail
UniRef90	UHGV-1397598_35	UniRef90_A0A843J9F0	219.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1397598_35	1504822.CCNO01000012_gene492	249.0	0	N/A	N/A
structural_annotation	UHGV-1397598_35	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1397598_37	phrog_7115	109.6	2e-32	N/A	unknown function
UniRef90	UHGV-1397598_37	UniRef90_A0A810PSE6	251.0	0	bPH_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-1397598_37	1514668.JOOA01000002_gene2950	194.0	0	Bacterial PH domain	N/A
Pfam	UHGV-1397598_37	PF08000	N/A	N/A	Bacterial PH domain	bPH_1
structural_annotation	UHGV-1397598_37	PF08000,MF_00437	N/A	N/A	N/A	N/A
PHROG	UHGV-1397598_38	phrog_6900	258.8	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1397598_38	1499683.CCFF01000017_gene2565	298.0	0	tape measure	N/A
COG	UHGV-1397598_38	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1397598_38	MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-1397598_39	phrog_33	42.6	0.0000000000089	distal tail protein Dit	tail
UniRef90	UHGV-1397598_39	UniRef90_A0A374UNT1	127.0	9.19e-33	MtfA protein	N/A
eggNOG-mapper	UHGV-1397598_39	877414.ATWA01000019_gene2049	114.0	9.44e-29	N/A	N/A
structural_annotation	UHGV-1397598_39	PF05709,PF02408,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-1397598_40	K08135	79.8	1.4e-23	COL15A; collagen type XV alpha	N/A
PHROG	UHGV-1397598_40	phrog_3558	272.9	0	tail protein	tail
UniRef90	UHGV-1397598_40	UniRef90_A0A810Q1Y2	1352.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1397598_40	1235800.C819_02223	203.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-1397598_40	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
Pfam	UHGV-1397598_40	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-1397598_40	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1397598_40	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-1397598_41	phrog_372	197.4	0	tail protein	tail
UniRef90	UHGV-1397598_41	UniRef90_A0A3E3E6C0	129.0	7.93e-28	Pilus assembly protein	N/A
eggNOG-mapper	UHGV-1397598_41	1336234.JAGN01000004_gene514	60.8	0.000000992	N/A	N/A
Pfam	UHGV-1397598_41	PF05895	N/A	N/A	N/A	DUF859
structural_annotation	UHGV-1397598_41	PF05895,MF_04116,NF010681,COG3291,COG5608	N/A	N/A	N/A	N/A
PHROG	UHGV-1397598_42	phrog_1863	72.2	4e-21	N/A	unknown function
eggNOG-mapper	UHGV-1397598_42	718252.FP2_04900	115.0	1.26e-32	N/A	N/A
PHROG	UHGV-1397598_43	phrog_1129	70.3	1.7e-20	holin	lysis
UniRef90	UHGV-1397598_43	UniRef90_A0A810PUU2	184.0	0	Holin	N/A
eggNOG-mapper	UHGV-1397598_43	1410668.JNKC01000001_gene1676	96.7	3.74e-25	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-1397598_43	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1397598_43	PF06946	N/A	N/A	N/A	N/A
KOfam	UHGV-1397598_44	K01448	61.3	1.4e-17	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1397598_44	phrog_435	85.7	5.2e-25	endolysin	lysis
UniRef90	UHGV-1397598_44	UniRef90_A0A810PZ73	451.0	0	SPOR domain-containing protein	N/A
eggNOG-mapper	UHGV-1397598_44	697281.Mahau_0053	133.0	5.74e-35	n-acetylmuramoyl-l-alanine amidase	N/A
Pfam	UHGV-1397598_44	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-1397598_44	PF08230	N/A	N/A	CW_7 repeat	CW_7
Pfam	UHGV-1397598_44	PF05036	N/A	N/A	SPOR domain	SPOR
COG	UHGV-1397598_44	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-1397598_44	PF01520,PF08230,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1397598	Yes	29,403	53	74	1
UHGV-0174955	No	28,970	53	73	1