vOTU vOTU-028988

vOTU: vOTU-028988

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-028988
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00740 → vGENUS-01036 → vOTU-028988
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae
Host range breadth	Family
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0177848
Biosample ID	SAMN09781748
Genome length (bp)	31,732 bps
CheckV completeness	85.51% (Medium-quality)
CDS count	55
CDS density	95.27%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae	Total connections	51	Host agreement	72.55
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia	Total connections	4	Host agreement	75

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 85.51)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0177848_1	K22300	66.5	5.7e-19	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0177848_1	phrog_8	55.3	0.0000000000000016	transcriptional regulator	transcription regulation
UniRef90	UHGV-0177848_1	UniRef90_A0A2U1BEG8	109.0	2.16e-28	Helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0177848_1	887325.HMPREF0381_0352	105.0	1.42e-27	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0177848_1	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0177848_1	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0177848_1	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0177848_3	phrog_5610	67.7	9e-20	N/A	unknown function
eggNOG-mapper	UHGV-0177848_3	655812.HMPREF0061_0218	126.0	1.66e-32	N/A	N/A
Pfam	UHGV-0177848_3	PF16729	N/A	N/A	N/A	DUF5067
COG	UHGV-0177848_3	COG3170	N/A	N/A	Type IV pilus assembly protein FimV	N/A
eggNOG-mapper	UHGV-0177848_4	428127.EUBDOL_00130	52.4	0.00000253	sequence-specific DNA binding	N/A
COG	UHGV-0177848_4	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0177848_4	PF13443,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0177848_5	K06400	357.7	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0177848_5	phrog_95	343.6	0	integrase	integration and excision
UniRef90	UHGV-0177848_5	UniRef90_UPI00106696FE	387.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0177848_5	665956.HMPREF1032_03589	392.0	0	N/A	N/A
Pfam	UHGV-0177848_5	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0177848_5	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0177848_5	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0177848_5	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0177848_5	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0177848_6	1226322.HMPREF1545_00079	95.1	6.03e-24	N/A	N/A
structural_annotation	UHGV-0177848_7	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-0177848_8	phrog_20016	191.6	0	N/A	unknown function
UniRef90	UHGV-0177848_8	UniRef90_A0A285PT46	196.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0177848_8	1226322.HMPREF1545_00077	167.0	0	N/A	N/A
structural_annotation	UHGV-0177848_8	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0177848_9	phrog_16490	114.4	4.1e-35	N/A	unknown function
eggNOG-mapper	UHGV-0177848_9	1408437.JNJN01000043_gene803	164.0	0	N/A	N/A
PHROG	UHGV-0177848_10	phrog_22984	85.4	5.1e-25	N/A	unknown function
PHROG	UHGV-0177848_11	phrog_21718	91.3	9.9e-27	N/A	unknown function
eggNOG-mapper	UHGV-0177848_11	397290.C810_05210	80.1	4.41e-17	N/A	N/A
PHROG	UHGV-0177848_12	phrog_3754	93.7	1.6e-27	N/A	unknown function
eggNOG-mapper	UHGV-0177848_12	476272.RUMHYD_01764	150.0	2.8026e-45	N/A	N/A
UniRef90	UHGV-0177848_13	UniRef90_A0A8D9PDT6	71.6	0.0000000000000145	Transcriptional regulatory protein	N/A
PHROG	UHGV-0177848_14	phrog_608	63.5	3.9e-18	holin	lysis
UniRef90	UHGV-0177848_14	UniRef90_UPI0019604BA7	80.9	1.59e-17	phage holin, LLH family	N/A
eggNOG-mapper	UHGV-0177848_14	1121472.AQWN01000009_gene420	60.8	0.000000000178	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-0177848_14	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-0177848_14	PF09682,TIGR01673	N/A	N/A	N/A	N/A
PHROG	UHGV-0177848_15	phrog_37604	82.4	4.5e-24	N/A	unknown function
eggNOG-mapper	UHGV-0177848_15	585501.HMPREF6123_0817	72.8	0.0000000000000213	N/A	N/A
KOfam	UHGV-0177848_16	K07273	134.2	1.4e-39	acm; lysozyme	N/A
PHROG	UHGV-0177848_16	phrog_291	111.8	8.9e-33	endolysin	lysis
UniRef90	UHGV-0177848_16	UniRef90_A0A3D2G0D9	409.0	0	Cpl-7 domain-containing protein	N/A
eggNOG-mapper	UHGV-0177848_16	1123263.AUKY01000046_gene483	159.0	2.66247e-44	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0177848_16	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-0177848_16	PF08230	N/A	N/A	CW_7 repeat	CW_7
COG	UHGV-0177848_16	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0177848_16	PF01183,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0177848_18	phrog_9534	119.9	2.6e-35	head protein	head and packaging
UniRef90	UHGV-0177848_18	UniRef90_A7GI58	69.7	0.00000000228	Putative phage structural protein	N/A
eggNOG-mapper	UHGV-0177848_18	748224.HMPREF9436_00702	89.4	3.49e-17	COG NOG18825 non supervised orthologous group	N/A
structural_annotation	UHGV-0177848_18	PF20747	N/A	N/A	N/A	N/A
PHROG	UHGV-0177848_19	phrog_538	98.5	7.4e-29	minor tail protein	tail
UniRef90	UHGV-0177848_19	UniRef90_UPI001C113FEF	342.0	0	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-0177848_19	931626.Awo_c30930	65.9	0.00000000411	Siphovirus ReqiPepy6 Gp37-like protein	N/A
Pfam	UHGV-0177848_19	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0177848_19	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0177848_20	phrog_36410	65.6	6.1e-19	N/A	unknown function
UniRef90	UHGV-0177848_20	UniRef90_UPI001C0FCFFA	362.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-0177848_20	411471.SUBVAR_06982	105.0	6.96e-24	Phage tail protein	N/A
structural_annotation	UHGV-0177848_20	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0177848_21	phrog_23464	262.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0177848_21	665950.HMPREF1025_02660	258.0	0	phage tail tape measure protein	N/A
COG	UHGV-0177848_21	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0177848_21	PF20155,MF_04138	N/A	N/A	N/A	N/A
PHROG	UHGV-0177848_23	phrog_885	71.1	1.4e-20	major tail protein	tail
UniRef90	UHGV-0177848_23	UniRef90_A0A843J9F0	200.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0177848_23	1504822.CCNO01000012_gene492	228.0	0	N/A	N/A
structural_annotation	UHGV-0177848_23	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0177848_24	PF11367	N/A	N/A	N/A	N/A
Pfam	UHGV-0177848_25	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0177848_25	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0177848_25	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0177848_27	phrog_267	188.7	0	major head protein	head and packaging
UniRef90	UHGV-0177848_27	UniRef90_UPI001F06E68A	262.0	0	phage capsid protein	N/A
eggNOG-mapper	UHGV-0177848_27	877414.ATWA01000001_gene909	256.0	0	P22 coat protein-protein 5 domain protein	N/A
Pfam	UHGV-0177848_27	PF19821	N/A	N/A	Phage capsid protein	Phage_capsid_2
structural_annotation	UHGV-0177848_27	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0177848_28	UniRef90_A0A6B9SU02	90.1	6.08e-19	Fibronectin autolysin	N/A
structural_annotation	UHGV-0177848_28	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0177848_29	phrog_5	67.4	3.4e-19	tail completion or Neck1 protein	connector
UniRef90	UHGV-0177848_29	UniRef90_UPI000691EB78	70.9	0.00000000000069	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0177848_29	1280689.AUJC01000007_gene3313	60.1	0.00000000157	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0177848_29	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0177848_29	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0177848_30	phrog_35328	133.5	5.30001e-40	N/A	unknown function
PHROG	UHGV-0177848_31	phrog_2468	95.2	4.4e-28	head morphogenesis	head and packaging
UniRef90	UHGV-0177848_31	UniRef90_A0A4D7AUA1	332.0	0	Phage head morphogenesis protein	N/A
eggNOG-mapper	UHGV-0177848_31	1235792.C808_05364	186.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0177848_31	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0177848_31	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0177848_31	PF04233,PF21814,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0177848_32	phrog_64	155.1	0	portal protein	head and packaging
UniRef90	UHGV-0177848_32	UniRef90_UPI0018A8A301	595.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0177848_32	673376.F2VHW1_9CAUD	203.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0177848_32	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0177848_32	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0177848_33	phrog_38	159.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-0177848_33	UniRef90_UPI00046F67CE	411.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0177848_33	1140001.I571_01829	414.0	0	N/A	N/A
structural_annotation	UHGV-0177848_33	PF17289,PF05876,MF_04147,NF033889,COG5323	N/A	N/A	N/A	N/A
KOfam	UHGV-0177848_34	K07474	136.0	4.3e-40	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0177848_34	phrog_51	136.0	2.2e-40	terminase small subunit	head and packaging
UniRef90	UHGV-0177848_34	UniRef90_UPI001379A213	149.0	3.25101e-43	terminase small subunit	N/A
eggNOG-mapper	UHGV-0177848_34	1347392.CCEZ01000005_gene1228	128.0	7.03e-36	Terminase small subunit	N/A
Pfam	UHGV-0177848_34	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0177848_34	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0177848_34	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-0177848_35	phrog_36	55.8	9.4e-16	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0177848_35	428125.CLOLEP_01806	62.4	0.000000000323	N/A	N/A
structural_annotation	UHGV-0177848_35	PF07374,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0177848_45	phrog_22543	41.0	0.00000000001	N/A	unknown function
Pfam	UHGV-0177848_46	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0177848_46	PF04448,NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-0177848_47	phrog_599	42.2	0.000000000017	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0177848_47	UniRef90_UPI001D09006D	56.2	0.00000000411	Lar family restriction alleviation protein	N/A
Pfam	UHGV-0177848_47	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0177848_47	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-0177848_47	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-0177848_47	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-0177848_49	phrog_374	79.5	9.94922e-44	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0177848_49	UniRef90_UPI0006D56AE3	111.0	1.16e-26	AP2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0177848_49	478749.BRYFOR_05054	116.0	1.53e-28	AP2 domain protein	N/A
structural_annotation	UHGV-0177848_49	PF17375	N/A	N/A	N/A	N/A
PHROG	UHGV-0177848_50	phrog_1770	93.5	2.3e-27	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0177848_50	UniRef90_UPI001F1BE169	102.0	1.52e-24	Holliday junction endonuclease	N/A
eggNOG-mapper	UHGV-0177848_50	329726.AM1_4255	102.0	3.24e-25	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group	N/A
COG	UHGV-0177848_50	COG0817	N/A	N/A	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	N/A
structural_annotation	UHGV-0177848_50	PF16921,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
PHROG	UHGV-0177848_51	phrog_757	217.3	0	DNA methyltransferase	other
UniRef90	UHGV-0177848_51	UniRef90_UPI001A9B5584	241.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0177848_51	1235790.C805_00032	256.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0177848_51	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0177848_51	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0177848_53	phrog_18306	41.6	0.000000000022	N/A	unknown function
structural_annotation	UHGV-0177848_53	PF01423,MF_00257,NF001963,COG1958	N/A	N/A	N/A	N/A
KOfam	UHGV-0177848_54	K02315	141.9	5.79997e-42	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0177848_54	phrog_50	125.4	5.5e-37	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0177848_54	UniRef90_A0A3A9ED12	152.0	3.52006e-41	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0177848_54	1121333.JMLH01000056_gene1758	152.0	3.15012e-42	IstB-like ATP binding protein	N/A
Pfam	UHGV-0177848_54	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-0177848_54	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0177848_54	PF01695,MF_01919,NF005992,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-0177848_55	phrog_15768	92.2	8e-27	N/A	unknown function
eggNOG-mapper	UHGV-0177848_55	642492.Clole_0798	92.8	7.37e-22	N/A	N/A
COG	UHGV-0177848_55	COG3935	N/A	N/A	DNA replication protein DnaD	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0177848	Yes	31,732	56	86	1
UHGV-0199022	No	28,719	56	77	1