vOTU vOTU-029166

vOTU: vOTU-029166

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-029166
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-02657 → vGENUS-03353 → vOTU-029166
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Lawsonibacter → Lawsonibacter sp900549405
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0180607
Biosample ID	SAMN09781737
Genome length (bp)	19,812 bps
CheckV completeness	57.58% (Medium-quality)
CDS count	41
CDS density	91.19%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Lawsonibacter → Lawsonibacter sp900549405	Total connections	11	Host agreement	90.91
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 57.58)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0180607_1	K07451	45.6	0.0000000000013	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0180607_1	phrog_119	77.3	2.1e-22	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0180607_1	UniRef90_A0A7C6HGS4	115.0	8.63e-32	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0180607_1	755731.Clo1100_0542	104.0	4.22e-28	HNH nucleases	N/A
Pfam	UHGV-0180607_1	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0180607_1	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
UniRef90	UHGV-0180607_2	UniRef90_UPI001C10554C	55.5	0.00000000535	cysteine-rich KTR domain-containing protein	N/A
Pfam	UHGV-0180607_2	PF14205	N/A	N/A	Cysteine-rich KTR	Cys_rich_KTR
PHROG	UHGV-0180607_3	phrog_3584	162.0	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0180607_3	742738.HMPREF9460_00867	209.0	0	N/A	N/A
structural_annotation	UHGV-0180607_3	PF01446,NF041486	N/A	N/A	N/A	N/A
UniRef90	UHGV-0180607_7	UniRef90_A0A8D9PDT5	105.0	3.1e-27	Hydrogenase/urease nickel incorporation protein	N/A
structural_annotation	UHGV-0180607_8	PF02882,MF_01576,NF010775,COG0190	N/A	N/A	N/A	N/A
KOfam	UHGV-0180607_11	K01520	138.3	6.09999e-41	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-0180607_11	phrog_135	113.6	1.5e-33	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0180607_11	UniRef90_UPI001D07FBC5	265.0	0	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-0180607_11	887929.HMP0721_1278	162.0	0	dUTPase	N/A
Pfam	UHGV-0180607_11	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-0180607_11	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-0180607_11	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-0180607_11	PF00692,MF_00116,TIGR00576,COG0756	N/A	N/A	N/A	N/A
KOfam	UHGV-0180607_12	K03111	138.7	6.79994e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0180607_12	phrog_44	132.8	2.6e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0180607_12	UniRef90_UPI0012489F18	190.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0180607_12	693746.OBV_19910	151.0	2.8026e-45	Single-strand binding protein family	N/A
Pfam	UHGV-0180607_12	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0180607_12	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0180607_12	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0180607_12	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0180607_12	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0180607_13	K16628	51.9	0.0000000000000028	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-0180607_13	phrog_4433	262.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0180607_13	269482.Bcep1808_1157	97.4	2.52e-20	Flagellar Assembly Protein A	N/A
Pfam	UHGV-0180607_13	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0180607_13	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
KOfam	UHGV-0180607_15	K02314	293.9	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0180607_15	phrog_19	243.8	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0180607_15	UniRef90_A0A3A8Z521	483.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-0180607_15	1007096.BAGW01000033_gene1616	268.0	0	DnaB-like helicase N terminal domain	N/A
Pfam	UHGV-0180607_15	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0180607_15	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0180607_15	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0180607_15	PF03796,PF00772,MF_04155,NF005240,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-0180607_16	phrog_428	57.6	3.4e-16	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0180607_16	UniRef90_A0A8J6MF41	195.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0180607_16	1226322.HMPREF1545_00094	156.0	6.30584e-44	DnaD domain protein	N/A
Pfam	UHGV-0180607_16	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0180607_16	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0180607_16	PF20714,MF_01177,NF040582,COG3355	N/A	N/A	N/A	N/A
PHROG	UHGV-0180607_18	phrog_6058	45.3	0.0000000000011	N/A	unknown function
eggNOG-mapper	UHGV-0180607_18	742738.HMPREF9460_00848	105.0	4.26e-28	N/A	N/A
structural_annotation	UHGV-0180607_18	PF12728,TIGR01764	N/A	N/A	N/A	N/A
KOfam	UHGV-0180607_21	K18830	63.6	4.8e-18	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0180607_21	phrog_8	50.6	0.00000000000005	transcriptional regulator	transcription regulation
UniRef90	UHGV-0180607_21	UniRef90_A0A173S0H0	139.0	2.98e-40	Antitoxin PezA	N/A
eggNOG-mapper	UHGV-0180607_21	1235797.C816_03553	125.0	8.22e-35	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-0180607_21	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0180607_21	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0180607_21	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0180607_24	phrog_38135	69.3	3.8e-20	N/A	unknown function
eggNOG-mapper	UHGV-0180607_24	1151292.QEW_0647	72.8	0.000000000000132	N/A	N/A
Pfam	UHGV-0180607_24	PF14020	N/A	N/A	N/A	DUF4236
structural_annotation	UHGV-0180607_24	PF14020,PF21602	N/A	N/A	N/A	N/A
KOfam	UHGV-0180607_25	K14059	108.5	1.1e-31	int; integrase	N/A
PHROG	UHGV-0180607_25	phrog_1	145.8	4.1058e-43	integrase	integration and excision
UniRef90	UHGV-0180607_25	UniRef90_A0A3D4D8C4	357.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0180607_25	693746.OBV_19730	345.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0180607_25	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0180607_25	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0180607_25	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0180607_26	1378168.N510_03079	105.0	5.02e-25	N/A	N/A
eggNOG-mapper	UHGV-0180607_27	1408437.JNJN01000043_gene802	154.0	0	N/A	N/A
PHROG	UHGV-0180607_28	phrog_16490	189.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0180607_28	1408437.JNJN01000043_gene803	177.0	0	N/A	N/A
eggNOG-mapper	UHGV-0180607_30	445972.ANACOL_01878	72.4	0.0000000000000545	N/A	N/A
UniRef90	UHGV-0180607_33	UniRef90_UPI00164AED9E	88.2	1.84e-20	helix-turn-helix domain-containing protein	N/A
COG	UHGV-0180607_33	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-0180607_33	NF040522,COG2944	N/A	N/A	N/A	N/A
Pfam	UHGV-0180607_34	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
structural_annotation	UHGV-0180607_34	PF04545,MF_00245,NF001067,COG2771	N/A	N/A	N/A	N/A
KOfam	UHGV-0180607_35	K01447	63.5	4.2e-18	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0180607_35	phrog_15001	152.1	4.2039e-45	endolysin	lysis
UniRef90	UHGV-0180607_35	UniRef90_UPI001EE14AF5	426.0	0	peptidoglycan recognition protein family protein	N/A
eggNOG-mapper	UHGV-0180607_35	552398.HMPREF0866_01156	303.0	0	Ami_2	N/A
Pfam	UHGV-0180607_35	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0180607_35	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0180607_35	PF01510,MF_04111,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-0180607_37	phrog_1129	68.0	1e-19	holin	lysis
UniRef90	UHGV-0180607_37	UniRef90_UPI001EDED0D7	160.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-0180607_37	1007096.BAGW01000036_gene2663	123.0	1.67e-35	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0180607_37	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0180607_37	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0180607_38	phrog_1863	63.9	1.7e-18	N/A	unknown function
eggNOG-mapper	UHGV-0180607_38	748224.HMPREF9436_00408	102.0	6.67e-28	N/A	N/A
eggNOG-mapper	UHGV-0180607_39	1408437.JNJN01000040_gene189	73.6	0.00000000000000148	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0180607	Yes	19,812	61	58	1
UHGV-0192800	No	19,623	61	57	1