vOTU vOTU-029226

vOTU: vOTU-029226

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-029226
Number of genomes	3
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-01291 → vGENUS-14319 → vOTU-029226
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1442133
Biosample ID	SAMEA2580300
Genome length (bp)	32,338 bps
CheckV completeness	79.18% (Medium-quality)
CDS count	36
CDS density	92.44%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	1605	Host agreement	81.93
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	33	Host agreement	84.85

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 79.18)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1442133_1	K14059	108.2	1.1e-31	int; integrase	N/A
PHROG	UHGV-1442133_1	phrog_1	131.2	8.9e-39	integrase	integration and excision
UniRef90	UHGV-1442133_1	UniRef90_A0A374MXE7	790.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1442133_1	693746.OBV_41260	182.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1442133_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1442133_1	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1442133_1	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-1442133_2	UniRef90_UPI000E52DA24	731.0	0	zinc ribbon domain-containing protein	N/A
Pfam	UHGV-1442133_2	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
COG	UHGV-1442133_2	COG0457	N/A	N/A	Tetratricopeptide (TPR) repeat	N/A
structural_annotation	UHGV-1442133_2	PF18933,PF02883,MF_02248,NF008627,COG5435,COG2847	N/A	N/A	N/A	N/A
KOfam	UHGV-1442133_3	K22300	56.6	4.9e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-1442133_3	UniRef90_A0A374MYQ7	228.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1442133_3	411470.RUMGNA_00191	107.0	1.25e-28	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-1442133_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1442133_3	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1442133_3	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1442133_4	phrog_6058	42.8	0.0000000000054	N/A	unknown function
eggNOG-mapper	UHGV-1442133_4	742738.HMPREF9460_00848	49.7	0.00000145	N/A	N/A
structural_annotation	UHGV-1442133_4	NF033787	N/A	N/A	N/A	N/A
PHROG	UHGV-1442133_6	phrog_323	72.2	2.8e-23	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1442133_6	UniRef90_UPI001C01CFF8	293.0	0	SANT/Myb domain-containing protein	N/A
eggNOG-mapper	UHGV-1442133_6	394503.Ccel_3305	340.0	0	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	N/A
dbAPIS	UHGV-1442133_6	APIS006	N/A	N/A	Trigger programmed cell death (PCD) by P4 prophage.	N/A
structural_annotation	UHGV-1442133_6	PF11112,NF040595	N/A	N/A	N/A	N/A
KOfam	UHGV-1442133_7	K03546	55.1	5.4e-16	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-1442133_7	phrog_1499	479.0	0	N/A	unknown function
UniRef90	UHGV-1442133_7	UniRef90_A0A2N0UXU2	746.0	0	Chromosome segregation protein	N/A
eggNOG-mapper	UHGV-1442133_7	645991.Sgly_0320	502.0	0	domain protein	N/A
Pfam	UHGV-1442133_7	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-1442133_7	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1442133_7	TIGR03185,COG5293	N/A	N/A	N/A	N/A
PHROG	UHGV-1442133_9	phrog_124	264.7	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1442133_9	UniRef90_A0A2N0UXR5	689.0	0	Phage nucleotide-binding protein	N/A
eggNOG-mapper	UHGV-1442133_9	411462.DORLON_00811	440.0	0	AAA domain	N/A
Pfam	UHGV-1442133_9	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-1442133_9	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-1442133_10	phrog_2698	176.6	0	N/A	unknown function
UniRef90	UHGV-1442133_10	UniRef90_UPI000F54335B	199.0	0	N/A	N/A
eggNOG-mapper	UHGV-1442133_10	742723.HMPREF9477_00927	139.0	7.44e-40	N/A	N/A
structural_annotation	UHGV-1442133_10	PF17426,NF005674	N/A	N/A	N/A	N/A
KOfam	UHGV-1442133_11	K17677	360.6	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-1442133_11	phrog_16	293.9	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1442133_11	UniRef90_A0A412ULZ3	1038.0	0	ATP-dependent helicase	N/A
eggNOG-mapper	UHGV-1442133_11	1235798.C817_03499	835.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-1442133_11	mREase_IV_00005	130.2	1.6e-38	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-1442133_11	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-1442133_11	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1442133_11	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-1442133_11	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
KOfam	UHGV-1442133_12	K07505	402.3	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-1442133_12	phrog_2597	1167.4	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1442133_12	UniRef90_A0A2N0UXP7	1431.0	0	Regulatory protein RepA	N/A
eggNOG-mapper	UHGV-1442133_12	394503.Ccel_3304	965.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-1442133_12	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-1442133_12	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-1442133_12	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-1442133_12	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
KOfam	UHGV-1442133_13	K01160	40.2	0.000000000076	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1442133_13	phrog_140	94.8	8.6e-28	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1442133_13	UniRef90_A0A2N0UXU6	258.0	0	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-1442133_13	1235798.C817_03497	204.0	0	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1442133_13	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1442133_13	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1442133_13	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1442133_14	PF02559,MF_00667,TIGR02861	N/A	N/A	N/A	N/A
KOfam	UHGV-1442133_17	K18830	51.0	0.000000000000031	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1442133_17	phrog_8	62.6	8.5e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-1442133_17	UniRef90_A0A374N9T4	120.0	9.5e-35	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1442133_17	717605.Theco_0106	75.9	1.03e-16	Cro/C1-type HTH DNA-binding domain	N/A
PADLOC	UHGV-1442133_17	retron_type_VI_hth_cluster2_1	40.3	0.00000000008	N/A	Retron
Pfam	UHGV-1442133_17	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1442133_17	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1442133_17	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1442133_19	K22300	40.5	0.000000000047	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1442133_19	phrog_8	50.2	0.00000000000005	transcriptional regulator	transcription regulation
UniRef90	UHGV-1442133_19	UniRef90_A0A412ULX1	136.0	1.3e-40	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1442133_19	226185.EF_1277	54.3	0.0000000395	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1442133_19	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1442133_19	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1442133_19	PF01381,NF007257,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1442133_20	phrog_119	72.2	5.8e-21	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1442133_20	UniRef90_A0A412ULY9	223.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1442133_20	1158607.UAU_01026	102.0	1.98e-26	HNH endonuclease	N/A
Pfam	UHGV-1442133_20	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1442133_20	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1442133_21	phrog_5110	83.0	2.2e-24	terminase small subunit	head and packaging
UniRef90	UHGV-1442133_21	UniRef90_A0A1M5U1D5	113.0	4.35e-30	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-1442133_21	1211817.CCAT010000053_gene2128	100.0	1.11e-25	N/A	N/A
Pfam	UHGV-1442133_21	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
PHROG	UHGV-1442133_22	phrog_9	281.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-1442133_22	UniRef90_A0A412UM03	1036.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-1442133_22	86416.Clopa_0337	614.0	0	Phage Terminase	N/A
Pfam	UHGV-1442133_22	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1442133_22	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1442133_22	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1442133_22	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
KOfam	UHGV-1442133_23	K03427	219.2	0	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-1442133_23	phrog_6380	402.1	0	DNA methyltransferase	other
UniRef90	UHGV-1442133_23	UniRef90_A0A356CYE0	803.0	0	N-6 DNA methylase	N/A
eggNOG-mapper	UHGV-1442133_23	1201292.DR75_1654	338.0	0	type I restriction-modification system	N/A
PADLOC	UHGV-1442133_23	MTase_I_00005	240.8	0	Type I methyltransferase	RM
Pfam	UHGV-1442133_23	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-1442133_23	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-1442133_23	PF02384,PF01420,MF_01872,TIGR00497,COG0286,COG0732	N/A	N/A	N/A	N/A
PHROG	UHGV-1442133_24	phrog_12	93.3	1.9e-27	portal protein	head and packaging
UniRef90	UHGV-1442133_24	UniRef90_A0A412ULV9	746.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1442133_24	86416.Clopa_0339	260.0	0	Phage portal protein	N/A
Pfam	UHGV-1442133_24	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1442133_24	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1442133_24	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1442133_24	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1442133_25	K01358	142.1	4.60046e-42	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1442133_25	phrog_94	215.1	0	head maturation protease	head and packaging
UniRef90	UHGV-1442133_25	UniRef90_A0A412ULU1	402.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-1442133_25	86416.Clopa_0340	171.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1442133_25	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1442133_25	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1442133_25	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1442133_26	phrog_10	126.1	3.2e-37	major head protein	head and packaging
UniRef90	UHGV-1442133_26	UniRef90_A0A412ULW9	723.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1442133_26	1211817.CCAT010000053_gene2132	324.0	0	Phage capsid family	N/A
Pfam	UHGV-1442133_26	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1442133_26	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1442133_26	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1442133_26	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1442133_27	phrog_749	55.2	9.7e-16	N/A	unknown function
UniRef90	UHGV-1442133_27	UniRef90_A0A1G5CMX8	108.0	7.47e-29	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-1442133_27	1211817.CCAT010000053_gene2133	59.7	0.000000000292	N/A	N/A
PHROG	UHGV-1442133_28	phrog_19734	72.8	3.6e-21	N/A	unknown function
UniRef90	UHGV-1442133_28	UniRef90_UPI00057FE645	58.9	0.00000000622	phage head closure protein	N/A
eggNOG-mapper	UHGV-1442133_28	86416.Clopa_0343	59.3	0.000000000888	N/A	N/A
NCBIFam	UHGV-1442133_28	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-1442133_28	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1442133_29	272623.L59277	52.4	0.000000302	N/A	N/A
structural_annotation	UHGV-1442133_29	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
UniRef90	UHGV-1442133_30	UniRef90_UPI000E5564A4	270.0	0	HK97 gp10 family phage protein	N/A
Pfam	UHGV-1442133_30	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-1442133_30	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1442133_31	phrog_88	67.5	1.7e-19	major tail protein	tail
eggNOG-mapper	UHGV-1442133_31	1321782.HMPREF1986_01362	62.4	0.00000000261	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-1442133_31	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1442133_31	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1442133_32	PF11836	N/A	N/A	N/A	N/A
KOfam	UHGV-1442133_33	K20283	67.9	2e-20	GOLGA4; golgin subfamily A member 4	N/A
PHROG	UHGV-1442133_33	phrog_1272	245.8	0	tail length tape measure protein	tail
UniRef90	UHGV-1442133_33	UniRef90_A0A412ULX0	1677.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1442133_33	588581.Cpap_1264	204.0	0	Tail tape measure protein, TP901 family	N/A
Pfam	UHGV-1442133_33	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-1442133_33	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-1442133_33	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-1442133_34	phrog_33	77.1	3.4e-22	distal tail protein Dit	tail
UniRef90	UHGV-1442133_34	UniRef90_A0A1G5CPA2	134.0	1.69e-34	Phage-related protein	N/A
eggNOG-mapper	UHGV-1442133_34	1160721.RBI_I01575	88.2	4.97e-18	Phage tail protein	N/A
COG	UHGV-1442133_34	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1442133_34	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1442133_35	phrog_1067	97.7	2.9e-29	minor head protein	head and packaging
UniRef90	UHGV-1442133_35	UniRef90_A0A1G5CPD2	152.0	1.43e-38	Phage minor structural protein, N-terminal region	N/A
eggNOG-mapper	UHGV-1442133_35	1462527.CCDM010000003_gene3730	62.8	0.000000114	gp58-like protein	N/A
NCBIFam	UHGV-1442133_35	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1442133_35	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1442133_35	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1442133_36	PF10651	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1442133	Yes	32,338	41	79	1
UHGV-0181335	No	32,100	41	78	1
UHGV-1481942	No	31,965	41	78	1