vOTU vOTU-029227

vOTU: vOTU-029227

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-029227
Number of genomes	4
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia
Taxonomy (UHGV)	vFAM-00007 → vSUBFAM-00040 → vGENUS-00013 → vOTU-029227
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Agathobacter → Agathobacter faecis
Host range breadth	Species
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1391427
Biosample ID	N/A
Genome length (bp)	42,224 bps
CheckV completeness	73.19% (Medium-quality)
CDS count	68
CDS density	88.42%
tRNA count	3
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Agathobacter → Agathobacter faecis	Total connections	1507	Host agreement	80.96
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia	Total connections	39	Host agreement	71.79

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 73.19)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1391427_2	phrog_31631	40.0	0.00000000005	N/A	unknown function
UniRef90	UHGV-1391427_3	UniRef90_A0A2N5NVL9	90.9	3.88e-21	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-1391427_3	411470.RUMGNA_03786	90.9	6.5e-22	Helix-turn-helix XRE-family like proteins	N/A
COG	UHGV-1391427_3	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
eggNOG-mapper	UHGV-1391427_5	658655.HMPREF0988_00895	75.9	0.0000000000000104	N/A	N/A
PHROG	UHGV-1391427_6	phrog_229	119.4	1.9e-35	MazG-like pyrophosphatase	other
UniRef90	UHGV-1391427_6	UniRef90_UPI001D02B1F9	264.0	0	nucleoside triphosphate pyrophosphohydrolase family protein	N/A
eggNOG-mapper	UHGV-1391427_6	428125.CLOLEP_01391	104.0	3.75e-27	MazG nucleotide pyrophosphohydrolase domain	N/A
Pfam	UHGV-1391427_6	PF03819	N/A	N/A	MazG nucleotide pyrophosphohydrolase domain	MazG
COG	UHGV-1391427_6	COG1694	N/A	N/A	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	N/A
structural_annotation	UHGV-1391427_6	PF03819,MF_01020,TIGR03188,COG1694	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1391427_7	411473.RUMCAL_02525	97.8	7.07e-25	N/A	N/A
UniRef90	UHGV-1391427_9	UniRef90_UPI001D011ACB	170.0	0	zinc ribbon domain-containing protein	N/A
Pfam	UHGV-1391427_9	PF13248	N/A	N/A	zinc-ribbon domain	zf-ribbon_3
structural_annotation	UHGV-1391427_13	PF04466	N/A	N/A	N/A	N/A
KOfam	UHGV-1391427_18	K14415	332.6	0	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	N/A
PHROG	UHGV-1391427_18	phrog_1075	427.3	0	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1391427_18	UniRef90_A0A8D9PG28	769.0	0	tRNA-splicing ligase	N/A
eggNOG-mapper	UHGV-1391427_18	397290.C810_01387	584.0	0	tRNA-splicing ligase RtcB	N/A
Pfam	UHGV-1391427_18	PF01139	N/A	N/A	tRNA-splicing ligase RtcB	RtcB
COG	UHGV-1391427_18	COG1690	N/A	N/A	RNA-splicing ligase RtcB, repairs tRNA damage	N/A
structural_annotation	UHGV-1391427_18	PF01139,MF_03144,NF007153,COG1690	N/A	N/A	N/A	N/A
PHROG	UHGV-1391427_19	phrog_38	144.5	7.20267e-43	terminase large subunit	head and packaging
UniRef90	UHGV-1391427_19	UniRef90_A0A8D9PG33	738.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1391427_19	1232453.BAIF02000058_gene1623	422.0	0	TIGRFAM Phage	N/A
COG	UHGV-1391427_19	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1391427_19	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-1391427_20	phrog_36	62.2	1e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-1391427_20	UniRef90_A0A371AT86	75.5	0.0000000000000123	N/A	N/A
eggNOG-mapper	UHGV-1391427_20	689781.AUJX01000031_gene120	72.8	0.0000000000000245	N/A	N/A
COG	UHGV-1391427_20	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1391427_20	PF07374,MF_00674,NF008895,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-1391427_21	phrog_64	177.6	0	portal protein	head and packaging
UniRef90	UHGV-1391427_21	UniRef90_A0A173UGW9	951.0	0	Phage portal protein, SPP1 family	N/A
eggNOG-mapper	UHGV-1391427_21	1298920.KI911353_gene2663	458.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1391427_21	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1391427_21	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
UniRef90	UHGV-1391427_22	UniRef90_R6C0B6	176.0	0	Phage capsid scaffolding protein	N/A
PHROG	UHGV-1391427_23	phrog_909	48.6	0.00000000000014	major head protein	head and packaging
eggNOG-mapper	UHGV-1391427_23	1298920.KI911353_gene2661	124.0	3.27e-35	N/A	N/A
PHROG	UHGV-1391427_24	phrog_29	162.7	0	major head protein	head and packaging
UniRef90	UHGV-1391427_24	UniRef90_UPI001D02C54B	695.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-1391427_24	1298920.KI911353_gene2660	343.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-1391427_24	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-1391427_24	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-1391427_25	UniRef90_A0A416G2T8	65.9	0.00000000000188	Rho_N domain-containing protein	N/A
structural_annotation	UHGV-1391427_25	PF21169	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1391427_26	397290.C810_01402	63.5	0.0000000000255	N/A	N/A
PHROG	UHGV-1391427_27	phrog_4105	84.3	1.1e-24	N/A	unknown function
eggNOG-mapper	UHGV-1391427_27	411459.RUMOBE_00911	159.0	0	N/A	N/A
PHROG	UHGV-1391427_28	phrog_443	55.0	0.0000000000000025	holin	lysis
UniRef90	UHGV-1391427_28	UniRef90_UPI000BA3B743	99.8	3.36e-26	holin	N/A
eggNOG-mapper	UHGV-1391427_28	411490.ANACAC_00704	88.2	1.96e-22	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-1391427_28	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-1391427_28	PF16945	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1391427_29	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1391427_30	1298920.KI911353_gene2654	173.0	0	N/A	N/A
AcrCatalog	UHGV-1391427_30	cluster_24841	89.0	2.99e-24	NA	N/A
structural_annotation	UHGV-1391427_31	PF05657	N/A	N/A	N/A	N/A
UniRef90	UHGV-1391427_32	UniRef90_A0A8D9PGN2	184.0	0	Major tail protein	N/A
structural_annotation	UHGV-1391427_32	PF16463,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1391427_35	phrog_14030	133.2	1.7e-39	N/A	unknown function
UniRef90	UHGV-1391427_35	UniRef90_A0A3R6ARM6	213.0	0	Peptidoglycan-binding protein	N/A
eggNOG-mapper	UHGV-1391427_35	1235793.C809_02691	175.0	0	N-Acetylmuramoyl-L-alanine amidase	N/A
COG	UHGV-1391427_35	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
PHROG	UHGV-1391427_36	phrog_1535	66.3	2.6e-19	tail length tape measure protein	tail
UniRef90	UHGV-1391427_36	UniRef90_A0A173UI54	645.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1391427_36	1408437.JNJN01000010_gene1238	149.0	2.54e-37	domain protein	N/A
COG	UHGV-1391427_36	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-1391427_37	phrog_7168	82.6	1.1e-24	homing endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1391427_37	UniRef90_A0A173UI60	605.0	0	Group I intron endonuclease	N/A
eggNOG-mapper	UHGV-1391427_37	745718.JADT01000019_gene1515	84.7	1.11e-16	Intron encoded nuclease repeat motif	N/A
PADLOC	UHGV-1391427_37	HEase_00030	41.9	0.00000000002	homing endonuclease	RM
Pfam	UHGV-1391427_37	PF01541	N/A	N/A	GIY-YIG catalytic domain	GIY-YIG
Pfam	UHGV-1391427_37	PF07453	N/A	N/A	NUMOD1 domain	NUMOD1
NCBIFam	UHGV-1391427_37	TIGR01453.1	N/A	N/A	group I intron endonuclease	N/A
structural_annotation	UHGV-1391427_37	PF07453,PF19835,PF04936,TIGR01453	N/A	N/A	N/A	N/A
PHROG	UHGV-1391427_38	phrog_1535	163.1	0	tail length tape measure protein	tail
UniRef90	UHGV-1391427_38	UniRef90_A0A173UHS1	1031.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1391427_38	1232443.BAIA02000078_gene18	87.4	0.0000000000000124	phage tail tape measure protein	N/A
COG	UHGV-1391427_38	COG1511	N/A	N/A	N/A	N/A
UniRef90	UHGV-1391427_39	UniRef90_A0A173UG14	575.0	0	BIG2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1391427_39	1410624.JNKK01000088_gene2110	69.3	0.0000000000827	Bacterial Ig-like domain (group 2)	N/A
structural_annotation	UHGV-1391427_39	PF02368,PF07233,NF038353,NF005261	N/A	N/A	N/A	N/A
PHROG	UHGV-1391427_40	phrog_130	146.5	1.30321e-43	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1391427_40	UniRef90_A0A1I0BKG6	298.0	0	BRO family, N-terminal domain	N/A
eggNOG-mapper	UHGV-1391427_40	1443125.Z962_p0009	205.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-1391427_40	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
COG	UHGV-1391427_40	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1391427_40	PF02498,COG3617	N/A	N/A	N/A	N/A
PHROG	UHGV-1391427_41	phrog_1194	45.2	0.0000000000013	N/A	unknown function
Pfam	UHGV-1391427_41	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-1391427_41	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1391427_42	phrog_18190	485.3	0	N/A	unknown function
UniRef90	UHGV-1391427_42	UniRef90_A0A173UFM3	1288.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-1391427_42	397290.C810_05239	300.0	0	N/A	N/A
Pfam	UHGV-1391427_42	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
structural_annotation	UHGV-1391427_42	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-1391427_43	phrog_17196	140.2	1.10002e-41	kinase	other
eggNOG-mapper	UHGV-1391427_43	483218.BACPEC_01141	179.0	0	N/A	N/A
structural_annotation	UHGV-1391427_43	PF19537,PF13619,COG3536	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1391427_44	742733.HMPREF9469_01801	56.6	0.000000754	N/A	N/A
structural_annotation	UHGV-1391427_44	PF02839	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1391427_45	1232452.BAIB02000007_gene1607	87.4	2.53e-20	N/A	N/A
NCBIFam	UHGV-1391427_46	NF040910.1	N/A	N/A	CD1375 family protein	N/A
structural_annotation	UHGV-1391427_46	NF040910	N/A	N/A	N/A	N/A
KOfam	UHGV-1391427_47	K22300	40.8	0.000000000046	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1391427_47	phrog_2967	50.0	0.000000000000057	transcriptional regulator	transcription regulation
UniRef90	UHGV-1391427_47	UniRef90_UPI001D029144	248.0	0	transcriptional regulator	N/A
eggNOG-mapper	UHGV-1391427_47	457412.RSAG_00795	114.0	1.56e-30	sequence-specific DNA binding	N/A
COG	UHGV-1391427_47	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1391427_47	PF01381,NF007257,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-1391427_48	UniRef90_UPI001D0090A6	148.0	1.4013e-45	N/A	N/A
eggNOG-mapper	UHGV-1391427_48	411470.RUMGNA_03231	98.6	2.54e-26	N/A	N/A
Pfam	UHGV-1391427_48	PF05339	N/A	N/A	N/A	DUF739
COG	UHGV-1391427_48	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-1391427_48	PF05339,NF002773,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1391427_51	K07741	111.9	1.4e-32	antB; anti-repressor protein	N/A
PHROG	UHGV-1391427_51	phrog_130	235.4	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1391427_51	UniRef90_A0A356C696	334.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-1391427_51	1232452.BAIB02000007_gene1603	241.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-1391427_51	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-1391427_51	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-1391427_51	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1391427_51	PF03374,PF02498,TIGR02681,COG3645	N/A	N/A	N/A	N/A
PHROG	UHGV-1391427_54	phrog_26861	89.6	1.1e-26	N/A	unknown function
UniRef90	UHGV-1391427_54	UniRef90_A0A173RCS5	337.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1391427_54	1120998.AUFC01000016_gene32	118.0	8.51e-31	PFAM single-strand binding protein Primosomal replication protein n	N/A
Pfam	UHGV-1391427_54	PF00436	N/A	N/A	Single-strand binding protein family	SSB
COG	UHGV-1391427_54	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1391427_54	PF00436,PF13567,MF_00984,NF004476,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-1391427_56	K19171	116.3	2.8e-34	dndD; DNA sulfur modification protein DndD	N/A
PHROG	UHGV-1391427_56	phrog_77	237.6	0	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1391427_56	UniRef90_UPI001D02FD96	880.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1391427_56	1294142.CINTURNW_1008	330.0	0	nuclear chromosome segregation	N/A
Pfam	UHGV-1391427_56	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-1391427_56	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1391427_56	PF02463,MF_00449,NF041034,COG0419	N/A	N/A	N/A	N/A
PHROG	UHGV-1391427_57	phrog_2185	172.2	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1391427_57	UniRef90_UPI001BC46C39	235.0	0	Recombinase RecT	N/A
eggNOG-mapper	UHGV-1391427_57	658655.HMPREF0988_00886	306.0	0	N/A	N/A
PHROG	UHGV-1391427_58	phrog_2185	95.2	8.3e-28	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1391427_58	1232453.BAIF02000057_gene1136	166.0	0	N/A	N/A
PHROG	UHGV-1391427_60	phrog_25456	45.7	0.00000000000014	N/A	unknown function
KOfam	UHGV-1391427_61	K06940	48.9	0.00000000000012	N/A	N/A
PHROG	UHGV-1391427_61	phrog_32498	198.3	0	N/A	unknown function
UniRef90	UHGV-1391427_61	UniRef90_A0A3R6ASD4	223.0	0	YkgJ family cysteine cluster protein	N/A
eggNOG-mapper	UHGV-1391427_61	397290.C810_01479	149.0	1.26117e-44	Putative zinc- or iron-chelating domain	N/A
Pfam	UHGV-1391427_61	PF03692	N/A	N/A	Putative zinc- or iron-chelating domain	CxxCxxCC
structural_annotation	UHGV-1391427_61	PF03692	N/A	N/A	N/A	N/A
PHROG	UHGV-1391427_62	phrog_59	99.4	2.8e-29	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1391427_62	UniRef90_C0CR26	245.0	0	HNHc domain-containing protein	N/A
eggNOG-mapper	UHGV-1391427_62	1206110.L0P6F5_9CAUD	94.7	1.59e-21	sequence-specific DNA binding transcription factor activity	N/A
PADLOC	UHGV-1391427_62	HEase_00016	82.8	8.9e-24	homing endonuclease	RM
Pfam	UHGV-1391427_62	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
Pfam	UHGV-1391427_62	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-1391427_62	PF13392,PF07463	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1391427_63	658655.HMPREF0988_00883	71.6	3.57e-16	May be involved in the transport of PQQ or its precursor to the periplasm	N/A
COG	UHGV-1391427_63	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
KOfam	UHGV-1391427_64	K06167	48.7	0.00000000000011	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	N/A
PHROG	UHGV-1391427_64	phrog_392	126.7	2.5e-37	metal-dependent hydrolase	other
UniRef90	UHGV-1391427_64	UniRef90_A0A173REW9	312.0	0	Beta-lactamase superfamily domain	N/A
eggNOG-mapper	UHGV-1391427_64	658655.HMPREF0988_00882	162.0	0	Metallo-beta-lactamase superfamily	N/A
COG	UHGV-1391427_64	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-1391427_64	PF02112,MF_00457,NF041851,COG2220	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1391427_65	PF09629,NF002745	N/A	N/A	N/A	N/A
PHROG	UHGV-1391427_67	phrog_19106	306.7	0	N/A	unknown function
UniRef90	UHGV-1391427_67	UniRef90_A0A412EKN4	272.0	0	GIY-YIG nuclease family protein	N/A
eggNOG-mapper	UHGV-1391427_67	658655.HMPREF0988_00875	230.0	0	N/A	N/A
structural_annotation	UHGV-1391427_67	TIGR01453	N/A	N/A	N/A	N/A
PHROG	UHGV-1391427_68	phrog_11769	194.7	0	N/A	unknown function
UniRef90	UHGV-1391427_68	UniRef90_A0A173RDT0	286.0	0	Phage replisome organizer, putative, N-terminal region	N/A
eggNOG-mapper	UHGV-1391427_68	536232.CLM_1634	188.0	0	N-terminal phage replisome organiser (Phage_rep_org_N)	N/A
Pfam	UHGV-1391427_68	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
NCBIFam	UHGV-1391427_68	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1391427	Yes	42,224	40	73	1
UHGV-0082952	No	42,224	40	73	1
UHGV-0181336	No	39,715	40	69	1
UHGV-1472701	No	39,715	40	69	1