vOTU vOTU-029408

vOTU: vOTU-029408

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-029408
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00942 → vGENUS-00845 → vOTU-029408
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_D → Ruminococcus_D bicirculans
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1541712
Biosample ID	N/A
Genome length (bp)	26,854 bps
CheckV completeness	57.26% (Medium-quality)
CDS count	35
CDS density	86.94%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_D → Ruminococcus_D bicirculans	Total connections	1092	Host agreement	97.89
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_D → Ruminococcus_D bicirculans	Total connections	48	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 57.26)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1541712_1	phrog_864	58.8	7.7e-17	DNA primase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1541712_1	2754.EH55_09010	76.3	0.00000000000000641	Phage plasmid primase P4 family	N/A
Pfam	UHGV-1541712_1	PF03288	N/A	N/A	Poxvirus D5 protein-like	Pox_D5
COG	UHGV-1541712_1	COG3378	N/A	N/A	DNA primase, phage- or plasmid-associated	N/A
PHROG	UHGV-1541712_2	phrog_606	57.3	1.8e-16	terminase small subunit	head and packaging
UniRef90	UHGV-1541712_2	UniRef90_UPI001D07B715	125.0	3.84e-33	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-1541712_2	1235793.C809_00539	63.2	0.000000000735	N/A	N/A
Pfam	UHGV-1541712_2	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-1541712_2	PF16677	N/A	N/A	N/A	N/A
UniRef90	UHGV-1541712_6	UniRef90_A0A374HMV1	109.0	1.15e-29	HTH cro/C1-type domain-containing protein	N/A
structural_annotation	UHGV-1541712_6	PF20075,TIGR03070	N/A	N/A	N/A	N/A
KOfam	UHGV-1541712_7	K14060	131.2	9.7e-39	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-1541712_7	phrog_125	137.1	1.2e-40	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1541712_7	UniRef90_A0A374HKF2	352.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-1541712_7	931276.Cspa_c57140	192.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1541712_7	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-1541712_7	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1541712_7	PF00239,PF02796,MF_00489,NF009949,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-1541712_8	phrog_38	180.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-1541712_8	UniRef90_A0A3D4KYF7	305.0	0	DOD-type homing endonuclease domain-containing protein	N/A
eggNOG-mapper	UHGV-1541712_8	1232453.BAIF02000058_gene1623	278.0	0	TIGRFAM Phage	N/A
NCBIFam	UHGV-1541712_8	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-1541712_8	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1541712_8	PF17289,PF03237,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
PHROG	UHGV-1541712_10	phrog_355	40.2	0.000000000052	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1541712_10	UniRef90_A0A415UCX1	128.0	1.03e-36	N/A	N/A
eggNOG-mapper	UHGV-1541712_10	1256908.HMPREF0373_00479	124.0	5.76e-36	N/A	N/A
structural_annotation	UHGV-1541712_10	PF14359	N/A	N/A	N/A	N/A
PHROG	UHGV-1541712_12	phrog_64	212.3	0	portal protein	head and packaging
UniRef90	UHGV-1541712_12	UniRef90_A0A374HKE8	897.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1541712_12	1121866.AUGK01000003_gene1429	322.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1541712_12	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1541712_12	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1541712_13	phrog_2468	95.7	6.5e-29	head morphogenesis	head and packaging
UniRef90	UHGV-1541712_13	UniRef90_A0A374HKG4	426.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-1541712_13	1329516.JPST01000018_gene2643	79.3	0.0000000000000278	cell adhesion	N/A
Pfam	UHGV-1541712_13	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-1541712_13	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1541712_13	PF04233,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-1541712_15	phrog_909	88.0	8.3e-26	major head protein	head and packaging
UniRef90	UHGV-1541712_15	UniRef90_A0A0R1VNK8	59.7	0.00000000368	N/A	N/A
eggNOG-mapper	UHGV-1541712_15	1536772.R70723_06665	61.2	0.000000000108	N/A	N/A
PHROG	UHGV-1541712_16	phrog_29	195.5	0	major head protein	head and packaging
UniRef90	UHGV-1541712_16	UniRef90_A0A374HKR5	856.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-1541712_16	1232453.BAIF02000058_gene1628	310.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-1541712_16	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
Pfam	UHGV-1541712_16	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-1541712_16	PF03864,PF18316,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-1541712_17	UniRef90_A0A374HKI7	201.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-1541712_17	996306.SSUR61_0983	56.6	0.0000000055	N/A	N/A
Pfam	UHGV-1541712_17	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-1541712_17	TIGR01560	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1541712_18	1121866.AUGK01000003_gene1432	63.2	0.0000000000591	N/A	N/A
UniRef90	UHGV-1541712_19	UniRef90_UPI001BBD4500	124.0	3.44e-33	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1541712_19	397290.C810_01411	112.0	5.13e-29	N/A	N/A
structural_annotation	UHGV-1541712_20	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
UniRef90	UHGV-1541712_21	UniRef90_F4LSE1	55.5	0.000000519	Putative Major tail protein	N/A
eggNOG-mapper	UHGV-1541712_21	1209989.TepiRe1_1157	55.5	0.000000087	Phage tail tube protein, TTP	N/A
structural_annotation	UHGV-1541712_21	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-1541712_22	UniRef90_A0A374HKD4	226.0	0	N/A	N/A
eggNOG-mapper	UHGV-1541712_22	1123263.AUKY01000015_gene1618	77.4	5.76e-17	N/A	N/A
Pfam	UHGV-1541712_22	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-1541712_22	PF16478	N/A	N/A	N/A	N/A
PHROG	UHGV-1541712_24	phrog_1535	123.2	5.60519e-45	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1541712_24	1121866.AUGK01000003_gene1437	219.0	0	phage tail tape measure protein	N/A
COG	UHGV-1541712_24	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
PHROG	UHGV-1541712_25	phrog_1194	85.6	4.6e-25	N/A	unknown function
eggNOG-mapper	UHGV-1541712_25	1160721.RBI_II00527	125.0	1.2e-35	N/A	N/A
structural_annotation	UHGV-1541712_25	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1541712_26	phrog_9680	54.4	7.6e-17	host range and adsorption protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1541712_26	UniRef90_R5LL83	70.5	0.00000000119	KID repeat-containing protein	N/A
eggNOG-mapper	UHGV-1541712_26	1160721.RBI_II00526	508.0	0	N/A	N/A
structural_annotation	UHGV-1541712_26	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1541712_28	1410617.JHXH01000006_gene232	86.3	0.00000000000000516	N/A	N/A
structural_annotation	UHGV-1541712_28	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-1541712_30	phrog_134	44.7	0.0000000000018	N/A	unknown function
UniRef90	UHGV-1541712_30	UniRef90_A0A5R9MGY3	94.0	1.68e-24	XkdX family protein	N/A
eggNOG-mapper	UHGV-1541712_30	1298920.KI911353_gene543	62.0	0.00000000000128	Phage uncharacterised protein (Phage_XkdX)	N/A
Pfam	UHGV-1541712_30	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
structural_annotation	UHGV-1541712_30	PF09693,TIGR01669	N/A	N/A	N/A	N/A
PHROG	UHGV-1541712_31	phrog_199	81.3	1e-23	holin	lysis
UniRef90	UHGV-1541712_31	UniRef90_A0A373XMP0	282.0	0	Holin	N/A
eggNOG-mapper	UHGV-1541712_31	1160721.RBI_I01565	184.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-1541712_31	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1541712_31	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-1541712_31	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-1541712_31	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-1541712_32	phrog_297	172.0	0	holin	lysis
UniRef90	UHGV-1541712_32	UniRef90_A0A356CY82	466.0	0	Peptidase C51 domain-containing protein	N/A
eggNOG-mapper	UHGV-1541712_32	1160721.RBI_I01913	94.0	3.68e-20	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-1541712_32	PF05257	N/A	N/A	CHAP domain	CHAP
COG	UHGV-1541712_32	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1541712_32	PF06940,TIGR02594,COG3942	N/A	N/A	N/A	N/A
PHROG	UHGV-1541712_33	phrog_13890	63.2	3.2e-18	N/A	unknown function
UniRef90	UHGV-1541712_33	UniRef90_R6T165	80.1	1.37e-18	Protein CopB	N/A
eggNOG-mapper	UHGV-1541712_33	1507.HMPREF0262_00298	61.2	0.00000000000785	N/A	N/A
structural_annotation	UHGV-1541712_33	PF10723,NF010256,COG4710	N/A	N/A	N/A	N/A
PHROG	UHGV-1541712_34	phrog_18108	105.7	4.3e-31	N/A	unknown function
UniRef90	UHGV-1541712_34	UniRef90_UPI0004BFFB0D	107.0	5.17e-25	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1541712_34	457405.FSDG_00799	127.0	2.15e-34	N/A	N/A
structural_annotation	UHGV-1541712_34	PF07443	N/A	N/A	N/A	N/A
KOfam	UHGV-1541712_35	K06400	271.7	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1541712_35	phrog_95	279.5	0	integrase	integration and excision
UniRef90	UHGV-1541712_35	UniRef90_A0A1C6DDF2	533.0	0	DNA-invertase hin	N/A
eggNOG-mapper	UHGV-1541712_35	1395513.P343_09910	189.0	0	PFAM Resolvase domain	N/A
Pfam	UHGV-1541712_35	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1541712_35	PF07508	N/A	N/A	Recombinase	Recombinase
COG	UHGV-1541712_35	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1541712_35	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1541712	Yes	26,854	43	57	1
UHGV-0127280	No	27,799	43	59	1
UHGV-0183831	No	22,699	43	48	1