vOTU vOTU-029481

vOTU: vOTU-029481

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-029481
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00114 → vOTU-029481
Host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium → Clostridium neonatale
Host range breadth	Species
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0184741
Biosample ID	SAMN00699754
Genome length (bp)	38,459 bps
CheckV completeness	73.54% (Medium-quality)
CDS count	44
CDS density	83.58%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium → Clostridium neonatale	Total connections	5	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium → Clostridium neonatale	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 73.54)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0184741_1	phrog_5156	313.6	0	N/A	unknown function
UniRef90	UHGV-0184741_1	UniRef90_A0A161W0T1	682.0	0	AAA-like domain protein	N/A
eggNOG-mapper	UHGV-0184741_1	1415774.U728_3781	1224.0	0	COG0433 Predicted ATPase	N/A
COG	UHGV-0184741_1	COG0433	N/A	N/A	Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains	N/A
structural_annotation	UHGV-0184741_1	PF02534,NF041017,COG3451	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0184741_2	545697.HMPREF0216_02884	58.9	0.0000000000928	N/A	N/A
UniRef90	UHGV-0184741_3	UniRef90_A5I485	79.0	3.62e-16	Putative membrane protein	N/A
eggNOG-mapper	UHGV-0184741_3	536232.CLM_2490	77.0	3.41e-16	N/A	N/A
PHROG	UHGV-0184741_5	phrog_7854	40.7	0.000000000033	endolysin	lysis
Pfam	UHGV-0184741_5	PF19127	N/A	N/A	Choline-binding repeat	Choline_bind_3
COG	UHGV-0184741_5	COG1376	N/A	N/A	Lipoprotein-anchoring transpeptidase ErfK/SrfK	N/A
KOfam	UHGV-0184741_6	K04763	186.3	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0184741_6	phrog_1	153.5	1.4013e-45	integrase	integration and excision
UniRef90	UHGV-0184741_6	UniRef90_U5MSZ0	566.0	0	DNA integration/recombination protein	N/A
eggNOG-mapper	UHGV-0184741_6	1345695.CLSA_c26770	566.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0184741_6	PF02899	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
Pfam	UHGV-0184741_6	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0184741_6	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0184741_6	PF00589,PF02899,MF_01808,TIGR02225,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0184741_7	K07699	57.4	2.3e-16	spo0A; two-component system, response regulator, stage 0 sporulation protein A	N/A
PHROG	UHGV-0184741_7	phrog_37855	57.1	2.7e-16	N/A	unknown function
UniRef90	UHGV-0184741_7	UniRef90_A0A6N3FID5	74.3	1.09e-16	Stage 0 sporulation protein A	N/A
eggNOG-mapper	UHGV-0184741_7	457396.CSBG_01317	77.8	6.16e-17	May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process	N/A
Pfam	UHGV-0184741_7	PF08769	N/A	N/A	Sporulation initiation factor Spo0A C terminal	Spo0A_C
COG	UHGV-0184741_7	COG0745	N/A	N/A	DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain	N/A
PHROG	UHGV-0184741_8	phrog_199	84.8	8.9e-25	holin	lysis
UniRef90	UHGV-0184741_8	UniRef90_UPI001F1ECB19	155.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-0184741_8	315749.Bcer98_2932	103.0	1.75e-26	toxin secretion phage lysis holin	N/A
Pfam	UHGV-0184741_8	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0184741_8	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0184741_8	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0184741_8	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-0184741_9	K24076	63.7	1.9e-18	PGRP-LB; peptidoglycan-recognition protein LB [EC:3.5.1.28]	N/A
PHROG	UHGV-0184741_9	phrog_35436	103.1	2.6e-30	amidase	lysis
UniRef90	UHGV-0184741_9	UniRef90_A0A6B4SLM0	375.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0184741_9	1196322.A370_02007	245.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0184741_9	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0184741_9	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
PHROG	UHGV-0184741_10	phrog_134	40.9	0.000000000027	N/A	unknown function
UniRef90	UHGV-0184741_10	UniRef90_A0A2A7MJP2	55.1	0.00000000284	XkdX family protein	N/A
Pfam	UHGV-0184741_10	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
NCBIFam	UHGV-0184741_10	TIGR01669.1	N/A	N/A	XkdX family protein	N/A
PHROG	UHGV-0184741_12	phrog_28838	163.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0184741_12	1415774.U728_1241	224.0	0	nuclear chromosome segregation	N/A
COG	UHGV-0184741_12	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
PHROG	UHGV-0184741_13	phrog_33972	281.1	0	tail protein	tail
UniRef90	UHGV-0184741_13	UniRef90_A0A3P6KSJ0	783.0	0	Phage minor structural protein	N/A
eggNOG-mapper	UHGV-0184741_13	536233.CLO_1579	546.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0184741_13	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0184741_13	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0184741_13	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0184741_13	PF14594,TIGR01665,NF041249,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0184741_14	phrog_33	69.0	1.1e-19	distal tail protein Dit	tail
UniRef90	UHGV-0184741_14	UniRef90_A0A846KAZ6	355.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0184741_14	536233.CLO_0897	348.0	0	tail component	N/A
COG	UHGV-0184741_14	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0184741_14	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-0184741_15	K10400	51.5	0.0000000000000078	KIF15; kinesin family member 15	N/A
PHROG	UHGV-0184741_15	phrog_6900	253.3	0	tail length tape measure protein	tail
UniRef90	UHGV-0184741_15	UniRef90_A0A3P6JX11	1049.0	0	Phage-related protein, gp16	N/A
eggNOG-mapper	UHGV-0184741_15	536233.CLO_1577	771.0	0	tape measure	N/A
COG	UHGV-0184741_15	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
PHROG	UHGV-0184741_16	phrog_706	164.3	0	N/A	unknown function
UniRef90	UHGV-0184741_16	UniRef90_UPI001A8DB6F6	209.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0184741_16	536233.CLO_1574	285.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0184741_16	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0184741_16	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0184741_17	phrog_4450	80.8	1.8e-23	N/A	unknown function
UniRef90	UHGV-0184741_17	UniRef90_A0A6B4HZM7	130.0	4.11e-37	AP endonuclease	N/A
eggNOG-mapper	UHGV-0184741_17	536233.CLO_1573	122.0	1.09e-34	N/A	N/A
Pfam	UHGV-0184741_17	PF20378	N/A	N/A	N/A	DUF6673
PHROG	UHGV-0184741_18	phrog_3099	156.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0184741_18	536233.CLO_1572	258.0	0	N/A	N/A
structural_annotation	UHGV-0184741_18	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0184741_19	phrog_3266	142.3	1.49939e-42	tail completion	connector
UniRef90	UHGV-0184741_19	UniRef90_UPI001C0F39AF	212.0	0	chloramphenicol resistance protein	N/A
eggNOG-mapper	UHGV-0184741_19	536233.CLO_1571	201.0	0	N/A	N/A
structural_annotation	UHGV-0184741_19	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0184741_20	phrog_556	81.3	9.5e-24	minor head protein	head and packaging
UniRef90	UHGV-0184741_20	UniRef90_A0A6B4I042	187.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-0184741_20	536233.CLO_1570	184.0	0	Minor capsid protein	N/A
Pfam	UHGV-0184741_20	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0184741_20	PF11114	N/A	N/A	N/A	N/A
Pfam	UHGV-0184741_21	PF20536	N/A	N/A	N/A	DUF6751
eggNOG-mapper	UHGV-0184741_22	1499683.CCFF01000005_gene71	49.7	0.00000138	N/A	N/A
PHROG	UHGV-0184741_23	phrog_422	144.0	7.59504e-43	major head protein	head and packaging
eggNOG-mapper	UHGV-0184741_23	641112.ACOK01000073_gene2894	185.0	0	N/A	N/A
structural_annotation	UHGV-0184741_23	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0184741_24	phrog_172	44.7	0.0000000000026	head scaffolding protein	head and packaging
UniRef90	UHGV-0184741_24	UniRef90_UPI000983F898	124.0	5.36e-32	N/A	N/A
eggNOG-mapper	UHGV-0184741_24	1499683.CCFF01000017_gene2146	76.3	0.0000000000000264	N/A	N/A
structural_annotation	UHGV-0184741_24	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0184741_25	phrog_115	111.3	2e-33	minor head protein	head and packaging
UniRef90	UHGV-0184741_25	UniRef90_A0A6B4MAH3	253.0	0	Phage head morphogenesis protein	N/A
eggNOG-mapper	UHGV-0184741_25	1499683.CCFF01000017_gene2578	247.0	0	head morphogenesis protein, SPP1 gp7 family	N/A
Pfam	UHGV-0184741_25	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-0184741_25	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-0184741_25	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0184741_25	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0184741_26	phrog_64	223.8	0	portal protein	head and packaging
UniRef90	UHGV-0184741_26	UniRef90_UPI0018AAC53F	598.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0184741_26	1415774.U728_1093	433.0	0	portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0184741_26	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0184741_26	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0184741_27	phrog_38	213.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0184741_27	UniRef90_UPI0008339771	862.0	0	terminase	N/A
eggNOG-mapper	UHGV-0184741_27	1443125.Z962_07895	759.0	0	TIGRFAM Phage	N/A
COG	UHGV-0184741_27	COG5362	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0184741_27	PF17289,PF03354,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
KOfam	UHGV-0184741_28	K14060	111.4	1.1e-32	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-0184741_28	phrog_125	177.2	0	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0184741_28	UniRef90_UPI001C9A3C47	315.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0184741_28	1345695.CLSA_c29990	308.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0184741_28	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-0184741_28	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0184741_28	PF00239,PF02796,NF009949,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-0184741_29	phrog_2538	82.6	2.6e-24	terminase small subunit	head and packaging
UniRef90	UHGV-0184741_29	UniRef90_A0A1S8PID4	115.0	4.09e-30	HTH_Tnp_1_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0184741_29	1345695.CLSA_c30000	125.0	1.48e-34	N/A	N/A
Pfam	UHGV-0184741_29	PF13022	N/A	N/A	Helix-turn-helix of insertion element transposase	HTH_Tnp_1_2
structural_annotation	UHGV-0184741_29	PF13022,COG3677	N/A	N/A	N/A	N/A
PHROG	UHGV-0184741_31	phrog_190	72.9	4.8e-21	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0184741_31	UniRef90_A0A6B4XR16	204.0	0	N/A	N/A
eggNOG-mapper	UHGV-0184741_31	585503.HMPREF7545_1723	64.3	0.0000000000172	N/A	N/A
Pfam	UHGV-0184741_31	PF06356	N/A	N/A	N/A	DUF1064
UniRef90	UHGV-0184741_34	UniRef90_A0A6B4AAF3	160.0	0	Nuclease	N/A
eggNOG-mapper	UHGV-0184741_34	536233.CLO_1351	331.0	0	N/A	N/A
PHROG	UHGV-0184741_36	phrog_8308	299.8	0	N/A	unknown function
UniRef90	UHGV-0184741_36	UniRef90_UPI00068E7AF6	467.0	0	FlxA-like family protein	N/A
eggNOG-mapper	UHGV-0184741_36	1321778.HMPREF1982_03534	468.0	0	N/A	N/A
AcrCatalog	UHGV-0184741_36	cluster_142373	210.0	0	NA	N/A
structural_annotation	UHGV-0184741_36	PF05183	N/A	N/A	N/A	N/A
UniRef90	UHGV-0184741_39	UniRef90_UPI000983FB64	110.0	5.12e-25	type II toxin-antitoxin system HicA family toxin	N/A
eggNOG-mapper	UHGV-0184741_39	641107.CDLVIII_4637	76.6	0.000000000000144	N/A	N/A
Pfam	UHGV-0184741_39	PF07927	N/A	N/A	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
PHROG	UHGV-0184741_42	phrog_36540	80.6	2.1e-23	N/A	unknown function
UniRef90	UHGV-0184741_42	UniRef90_A0A6M0SNW5	322.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0184741_42	536232.CLM_2957	101.0	2.51e-23	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0184741_42	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
KOfam	UHGV-0184741_44	K07727	70.5	3.8e-20	K07727; putative transcriptional regulator	N/A
UniRef90	UHGV-0184741_44	UniRef90_A0A1S8PFD4	91.3	6.48e-23	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0184741_44	86416.Clopa_2815	77.8	2.56e-18	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0184741_44	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0184741_44	PF13443,NF041951,COG3655	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0184741	Yes	38,459	27	74	1
UHGV-0130310	No	37,921	27	73	1