vOTU vOTU-029503

vOTU: vOTU-029503

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-029503
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00089 → vOTU-029503
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_D → Ruminococcus_D sp000434695
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0075408
Biosample ID	N/A
Genome length (bp)	29,946 bps
CheckV completeness	87.11% (Medium-quality)
CDS count	44
CDS density	95.72%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_D → Ruminococcus_D sp000434695	Total connections	48	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_D → Ruminococcus_D sp000434695	Total connections	17	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 87.11)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0075408_1	K14059	258.4	0	int; integrase	N/A
PHROG	UHGV-0075408_1	phrog_1	214.6	0	integrase	integration and excision
UniRef90	UHGV-0075408_1	UniRef90_R6CF36	515.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0075408_1	469616.FMAG_00575	162.0	1.03696e-43	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0075408_1	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0075408_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0075408_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0075408_1	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0075408_2	K04892	153.0	1.4013e-45	KCND2, KV4.2; potassium voltage-gated channel Shal-related subfamily D member 2	N/A
PHROG	UHGV-0075408_2	phrog_7872	212.8	0	N/A	unknown function
UniRef90	UHGV-0075408_2	UniRef90_A0A1H0C5V7	270.0	0	Voltage-gated potassium channel	N/A
eggNOG-mapper	UHGV-0075408_2	742733.HMPREF9469_00903	266.0	0	Ion transport protein	N/A
Pfam	UHGV-0075408_2	PF00520	N/A	N/A	Ion transport protein	Ion_trans
COG	UHGV-0075408_2	COG0569	N/A	N/A	Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain	N/A
structural_annotation	UHGV-0075408_2	PF00520,NF040645	N/A	N/A	N/A	N/A
KOfam	UHGV-0075408_3	K07448	98.2	9.4e-29	mrr; restriction system protein	N/A
UniRef90	UHGV-0075408_3	UniRef90_A0A1G8SWH6	119.0	4.7e-29	Topoisomerase DNA binding C4 zinc finger	N/A
eggNOG-mapper	UHGV-0075408_3	397287.C807_03320	123.0	1.97e-32	Restriction endonuclease	N/A
PADLOC	UHGV-0075408_3	ZorD1_00005	63.3	3.2e-18	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
Pfam	UHGV-0075408_3	PF04471	N/A	N/A	Restriction endonuclease	Mrr_cat
COG	UHGV-0075408_3	COG1787	N/A	N/A	Endonuclease, HJR/Mrr/RecB family	N/A
UniRef90	UHGV-0075408_5	UniRef90_UPI001D0998B8	150.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
Pfam	UHGV-0075408_5	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
structural_annotation	UHGV-0075408_5	PF06114	N/A	N/A	N/A	N/A
PHROG	UHGV-0075408_6	phrog_8	63.1	6.3e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0075408_6	UniRef90_A0A373XY93	214.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0075408_6	411462.DORLON_00819	70.1	0.000000000000109	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0075408_6	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0075408_6	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0075408_6	PF12844,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0075408_7	UniRef90_A0A373XXU1	84.7	4.89e-20	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0075408_7	428125.CLOLEP_02737	47.0	0.00000747	N/A	N/A
KOfam	UHGV-0075408_9	K00390	44.7	2.2e-25	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0075408_9	phrog_424	92.1	5.9e-27	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0075408_9	UniRef90_A0A3R6M557	620.0	0	PAPS_reduct domain-containing protein	N/A
eggNOG-mapper	UHGV-0075408_9	1235800.C819_02256	593.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
Pfam	UHGV-0075408_9	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0075408_9	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0075408_9	PF01507,MF_00063,TIGR00434,COG0175	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0075408_11	PF11372	N/A	N/A	N/A	N/A
UniRef90	UHGV-0075408_14	UniRef90_UPI001D0829A9	203.0	0	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0075408_14	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
KOfam	UHGV-0075408_15	K03546	67.8	1.7e-20	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-0075408_15	phrog_77	200.9	0	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0075408_15	UniRef90_A0A7X7ELI0	383.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0075408_15	537013.CLOSTMETH_01714	343.0	0	nuclear chromosome segregation	N/A
COG	UHGV-0075408_15	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0075408_15	PF02463,MF_00449,NF041034,COG0419	N/A	N/A	N/A	N/A
KOfam	UHGV-0075408_16	K07455	199.2	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0075408_16	phrog_148	209.1	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0075408_16	UniRef90_R6CEX4	530.0	0	Recombinase phage RecT family	N/A
eggNOG-mapper	UHGV-0075408_16	1347393.HG726022_gene3605	220.0	0	RecT family	N/A
Pfam	UHGV-0075408_16	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0075408_16	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0075408_16	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0075408_16	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-0075408_17	K06167	67.2	2.3e-19	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	N/A
PHROG	UHGV-0075408_17	phrog_392	191.7	0	metal-dependent hydrolase	other
UniRef90	UHGV-0075408_17	UniRef90_R6D1H0	461.0	0	Lactamase_B domain-containing protein	N/A
eggNOG-mapper	UHGV-0075408_17	537013.CLOSTMETH_01716	219.0	0	Metallo-beta-lactamase superfamily	N/A
Pfam	UHGV-0075408_17	PF12706	N/A	N/A	Beta-lactamase superfamily domain	Lactamase_B_2
dbAPIS	UHGV-0075408_17	APIS041	N/A	N/A	N/A	N/A
COG	UHGV-0075408_17	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-0075408_17	PF02112,MF_01818,NF041851,COG1234	N/A	N/A	N/A	N/A
KOfam	UHGV-0075408_18	K03111	132.0	7.2e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0075408_18	phrog_44	136.2	2.2e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0075408_18	UniRef90_R6C7H6	276.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0075408_18	1410617.JHXH01000001_gene879	162.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0075408_18	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0075408_18	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0075408_18	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0075408_18	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0075408_18	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0075408_19	phrog_190	112.8	3e-33	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0075408_19	UniRef90_UPI001C0F5697	121.0	1.77e-33	N/A	N/A
eggNOG-mapper	UHGV-0075408_19	742767.HMPREF9456_03412	110.0	4.89e-30	N/A	N/A
Pfam	UHGV-0075408_19	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0075408_19	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-0075408_20	phrog_20437	152.1	1.4013e-45	DNA replication initiation	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0075408_20	UniRef90_R6C7G7	396.0	0	DnaD domain protein	N/A
eggNOG-mapper	UHGV-0075408_20	445971.ANASTE_00700	155.0	1.82169e-43	N/A	N/A
Pfam	UHGV-0075408_20	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-0075408_20	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0075408_20	PF14297	N/A	N/A	N/A	N/A
PHROG	UHGV-0075408_22	phrog_25754	76.3	2.2e-22	N/A	unknown function
eggNOG-mapper	UHGV-0075408_22	97139.C824_00736	77.0	9.23e-18	N/A	N/A
structural_annotation	UHGV-0075408_22	PF18195,MF_00257,NF041655,COG1923	N/A	N/A	N/A	N/A
PHROG	UHGV-0075408_23	phrog_36	47.6	0.00000000000034	transcriptional regulator	transcription regulation
UniRef90	UHGV-0075408_23	UniRef90_R6CIY5	235.0	0	Sigma70_r4_2 domain-containing protein	N/A
structural_annotation	UHGV-0075408_23	PF02996	N/A	N/A	N/A	N/A
PHROG	UHGV-0075408_24	phrog_104	220.0	0	portal protein	head and packaging
UniRef90	UHGV-0075408_24	UniRef90_A0A373V3S0	489.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0075408_24	1232446.BAIE02000011_gene1602	440.0	0	Phage portal protein, SPP1 Gp6-like	N/A
structural_annotation	UHGV-0075408_24	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0075408_25	phrog_2494	97.5	1.3e-28	minor head protein	head and packaging
eggNOG-mapper	UHGV-0075408_25	1384065.JAGS01000001_gene524	81.3	0.000000000000016	N/A	N/A
COG	UHGV-0075408_25	COG5585	N/A	N/A	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	N/A
PHROG	UHGV-0075408_26	phrog_338	99.1	5e-29	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0075408_26	UniRef90_A0A011WMC8	214.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0075408_26	1280698.AUJS01000007_gene1032	170.0	0	HNH endonuclease domain protein	N/A
Pfam	UHGV-0075408_26	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0075408_26	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0075408_26	PF01844,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-0075408_27	phrog_17688	334.3	0	N/A	unknown function
UniRef90	UHGV-0075408_27	UniRef90_A0A3C2BAA2	768.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0075408_27	1280698.AUJS01000007_gene1036	537.0	0	phage terminase, large subunit	N/A
COG	UHGV-0075408_27	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0075408_27	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0075408_28	phrog_233	73.3	5.1e-21	head scaffolding protein	head and packaging
UniRef90	UHGV-0075408_28	UniRef90_A0A373VN88	134.0	1.44e-37	N/A	N/A
eggNOG-mapper	UHGV-0075408_28	936375.HMPREF1152_0678	72.0	0.000000000000083	N/A	N/A
Pfam	UHGV-0075408_28	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-0075408_28	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0075408_29	phrog_32396	133.8	5.19999e-40	N/A	unknown function
UniRef90	UHGV-0075408_29	UniRef90_A0A6L5X5D1	374.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0075408_29	706433.HMPREF9430_01265	362.0	0	Phage capsid family	N/A
Pfam	UHGV-0075408_29	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0075408_29	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-0075408_29	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0075408_30	phrog_137	56.0	5.7e-16	head-tail adaptor Ad1	connector
UniRef90	UHGV-0075408_30	UniRef90_R6C7E8	139.0	7.89e-40	Phage protein Gp19/Gp15/Gp42	N/A
eggNOG-mapper	UHGV-0075408_30	706433.HMPREF9430_01264	86.3	9.41e-20	Phage protein Gp19/Gp15/Gp42	N/A
Pfam	UHGV-0075408_30	PF09355	N/A	N/A	N/A	Phage_Gp19
structural_annotation	UHGV-0075408_30	PF09355	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0075408_31	1321372.AQQB01000060_gene66	78.6	3.19e-16	N/A	N/A
PHROG	UHGV-0075408_32	phrog_556	71.7	9e-21	minor head protein	head and packaging
UniRef90	UHGV-0075408_32	UniRef90_A0A3C0QTS8	54.7	0.000000363	Capsid protein	N/A
structural_annotation	UHGV-0075408_32	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0075408_33	phrog_3266	84.3	1.3e-24	tail completion	connector
eggNOG-mapper	UHGV-0075408_33	1449050.JNLE01000003_gene3885	105.0	3.06e-27	N/A	N/A
structural_annotation	UHGV-0075408_33	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0075408_34	phrog_3099	128.5	4.5e-38	N/A	unknown function
eggNOG-mapper	UHGV-0075408_34	1160721.RBI_II00532	186.0	0	N/A	N/A
structural_annotation	UHGV-0075408_34	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0075408_35	phrog_11299	86.5	3e-25	N/A	unknown function
eggNOG-mapper	UHGV-0075408_35	1449050.JNLE01000003_gene3883	60.8	0.000000000858	N/A	N/A
structural_annotation	UHGV-0075408_35	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0075408_36	phrog_706	137.0	1.2e-40	N/A	unknown function
UniRef90	UHGV-0075408_36	UniRef90_UPI00051C36A4	216.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0075408_36	1449050.JNLE01000003_gene3882	214.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0075408_36	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0075408_36	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0075408_37	phrog_1535	160.2	0	tail length tape measure protein	tail
UniRef90	UHGV-0075408_37	UniRef90_R6TDK7	361.0	0	Phage-related protein-like protein	N/A
eggNOG-mapper	UHGV-0075408_37	1236497.BAJQ01000020_gene1850	216.0	0	nuclear chromosome segregation	N/A
COG	UHGV-0075408_37	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0075408_37	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0075408_38	phrog_1194	84.2	1.2e-24	N/A	unknown function
eggNOG-mapper	UHGV-0075408_38	1160721.RBI_II00527	155.0	0	N/A	N/A
structural_annotation	UHGV-0075408_38	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0075408_39	1160721.RBI_II00526	327.0	0	N/A	N/A
structural_annotation	UHGV-0075408_39	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
UniRef90	UHGV-0075408_41	UniRef90_UPI001D08D8A2	256.0	0	phage baseplate upper protein	N/A
PHROG	UHGV-0075408_43	phrog_199	87.3	1.7e-25	holin	lysis
UniRef90	UHGV-0075408_43	UniRef90_R6CL31	272.0	0	Toxin secretion/phage lysis holin	N/A
eggNOG-mapper	UHGV-0075408_43	887325.HMPREF0381_0407	185.0	0	toxin secretion phage lysis holin	N/A
Pfam	UHGV-0075408_43	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0075408_43	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0075408_43	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0075408_43	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-0075408_44	K07273	174.0	0	acm; lysozyme	N/A
PHROG	UHGV-0075408_44	phrog_291	161.6	0	endolysin	lysis
UniRef90	UHGV-0075408_44	UniRef90_UPI001D06C0C4	520.0	0	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-0075408_44	246199.CUS_5914	293.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0075408_44	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0075408_44	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0075408_44	PF01183,PF01471,COG3757	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0075408	Yes	29,946	53	87	1
UHGV-0184970	No	30,043	53	88	1
UHGV-0100698	No	20,394	54	59	1