vOTU vOTU-029698

vOTU: vOTU-029698

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-029698
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-03056 → vOTU-029698
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Faecalimonas → Faecalimonas phoceensis
Host range breadth	Species
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1981043
Biosample ID	N/A
Genome length (bp)	29,794 bps
CheckV completeness	77.78% (Medium-quality)
CDS count	40
CDS density	91.58%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Faecalimonas → Faecalimonas phoceensis	Total connections	77	Host agreement	98.7
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae	Total connections	13	Host agreement	92.31

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 77.78)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1981043_2	K01356	41.2	0.000000000033	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-1981043_2	phrog_3502	41.6	0.000000000023	N/A	unknown function
UniRef90	UHGV-1981043_2	UniRef90_A0A174J3W3	71.6	0.00000000000000825	LexA repressor	N/A
eggNOG-mapper	UHGV-1981043_2	545697.HMPREF0216_00360	53.5	0.0000000232	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-1981043_2	PF01726	N/A	N/A	LexA DNA binding domain	LexA_DNA_bind
COG	UHGV-1981043_2	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1981043_2	PF01726,MF_00732,NF006812,COG3388	N/A	N/A	N/A	N/A
PHROG	UHGV-1981043_3	phrog_16351	60.1	3e-17	DNA binding protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1981043_3	742723.HMPREF9477_00922	144.0	2.77457e-43	N/A	N/A
PHROG	UHGV-1981043_4	phrog_8684	96.0	3.1e-28	N/A	unknown function
UniRef90	UHGV-1981043_4	UniRef90_A0A415S8F9	165.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-1981043_4	742723.HMPREF9477_00921	90.1	6.38e-21	YopX protein	N/A
Pfam	UHGV-1981043_4	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-1981043_4	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
PHROG	UHGV-1981043_5	phrog_419	103.7	2.1e-30	N/A	unknown function
eggNOG-mapper	UHGV-1981043_5	762660.E5EYD7_9CAUD	95.9	1.97e-24	N/A	N/A
structural_annotation	UHGV-1981043_5	PF14083	N/A	N/A	N/A	N/A
PHROG	UHGV-1981043_6	phrog_15198	101.1	6e-30	N/A	unknown function
UniRef90	UHGV-1981043_6	UniRef90_UPI001BC83939	122.0	2.28e-32	N/A	N/A
eggNOG-mapper	UHGV-1981043_6	658655.HMPREF0988_00863	79.0	0.00000000000000144	N/A	N/A
Pfam	UHGV-1981043_6	PF04448	N/A	N/A	N/A	DUF551
KOfam	UHGV-1981043_7	K00558	140.3	1.10002e-41	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1981043_7	phrog_116	163.3	0	DNA methyltransferase	other
UniRef90	UHGV-1981043_7	UniRef90_UPI0011825B4A	391.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1981043_7	1235798.C817_01880	412.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-1981043_7	MTase_II_00020	105.2	1.2e-30	Type II methyltransferase	RM
Pfam	UHGV-1981043_7	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1981043_7	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1981043_7	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-1981043_8	phrog_36	50.0	0.000000000000056	transcriptional regulator	transcription regulation
UniRef90	UHGV-1981043_8	UniRef90_A0A3D3U8Q6	124.0	6.78e-34	Sigma70_r4 domain-containing protein	N/A
eggNOG-mapper	UHGV-1981043_8	1256908.HMPREF0373_00671	189.0	0	N/A	N/A
structural_annotation	UHGV-1981043_8	PF04545,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-1981043_9	K22299	52.3	0.000000000000013	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
UniRef90	UHGV-1981043_9	UniRef90_UPI001C116A0F	137.0	8.04001e-40	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1981043_9	1128111.HMPREF0870_00982	98.2	5.81e-25	Protein conserved in bacteria	N/A
Pfam	UHGV-1981043_9	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-1981043_9	COG1426	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1981043_9	PF13560,MF_00535,NF041951,COG1513	N/A	N/A	N/A	N/A
PHROG	UHGV-1981043_10	phrog_87	49.8	0.000000000000036	metallo-protease	other
UniRef90	UHGV-1981043_10	UniRef90_UPI00191FA2AD	228.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-1981043_10	997296.PB1_16109	152.0	5.60519e-45	N/A	N/A
Pfam	UHGV-1981043_10	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-1981043_10	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-1981043_10	PF06114,MF_00745,COG2856	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1981043_11	1123288.SOV_6c00720	58.2	0.0000000000254	N/A	N/A
PHROG	UHGV-1981043_12	phrog_1889	247.0	0	terminase small subunit	head and packaging
UniRef90	UHGV-1981043_12	UniRef90_UPI0011DD9234	284.0	0	phage terminase small subunit	N/A
eggNOG-mapper	UHGV-1981043_12	33035.JPJF01000107_gene435	211.0	0	N/A	N/A
Pfam	UHGV-1981043_12	PF10668	N/A	N/A	Phage terminase small subunit	Phage_terminase
NCBIFam	UHGV-1981043_12	NF040601.1	N/A	N/A	phage terminase small subunit	N/A
COG	UHGV-1981043_12	COG5484	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1981043_12	PF06056,NF040601,COG5484	N/A	N/A	N/A	N/A
KOfam	UHGV-1981043_13	K06909	144.4	9.89317e-43	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1981043_13	phrog_10250	216.3	0	N/A	unknown function
UniRef90	UHGV-1981043_13	UniRef90_UPI0011DD38A6	752.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1981043_13	903814.ELI_3215	648.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-1981043_13	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-1981043_13	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1981043_13	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1981043_13	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1981043_14	phrog_64	408.2	0	portal protein	head and packaging
UniRef90	UHGV-1981043_14	UniRef90_R9N3I1	534.0	0	SPP1 family phage portal protein	N/A
eggNOG-mapper	UHGV-1981043_14	1235800.C819_00489	534.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1981043_14	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-1981043_14	TIGR01538.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-1981043_14	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-1981043_15	phrog_115	341.6	0	minor head protein	head and packaging
UniRef90	UHGV-1981043_15	UniRef90_A0A415Z1K6	512.0	0	Phage head morphogenesis protein	N/A
eggNOG-mapper	UHGV-1981043_15	1235800.C819_00488	361.0	0	Phage Mu protein F like protein	N/A
Pfam	UHGV-1981043_15	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-1981043_15	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-1981043_15	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1981043_16	phrog_3711	90.0	1.3e-26	N/A	unknown function
eggNOG-mapper	UHGV-1981043_16	411469.EUBHAL_01002	82.0	1.62e-19	N/A	N/A
PHROG	UHGV-1981043_17	phrog_172	153.7	1.4013e-45	head scaffolding protein	head and packaging
UniRef90	UHGV-1981043_17	UniRef90_UPI001594DC25	202.0	0	N/A	N/A
eggNOG-mapper	UHGV-1981043_17	742733.HMPREF9469_01824	178.0	0	N/A	N/A
Pfam	UHGV-1981043_17	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-1981043_17	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-1981043_18	phrog_267	186.8	0	major head protein	head and packaging
UniRef90	UHGV-1981043_18	UniRef90_A0A417IN35	488.0	0	P22 coat protein-protein 5 domain protein	N/A
eggNOG-mapper	UHGV-1981043_18	1504823.CCMM01000008_gene1041	489.0	0	P22 coat protein-protein 5 domain protein	N/A
structural_annotation	UHGV-1981043_18	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
Pfam	UHGV-1981043_19	PF07498	N/A	N/A	Rho termination factor, N-terminal domain	Rho_N
structural_annotation	UHGV-1981043_19	PF07498	N/A	N/A	N/A	N/A
PHROG	UHGV-1981043_20	phrog_132	68.8	6.5e-20	head-tail adaptor	connector
UniRef90	UHGV-1981043_20	UniRef90_UPI001D06FE42	142.0	1.05994e-41	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-1981043_20	742733.HMPREF9469_01821	127.0	7.4e-37	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-1981043_20	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-1981043_20	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1981043_21	phrog_2168	99.5	1.5e-29	N/A	unknown function
eggNOG-mapper	UHGV-1981043_21	742733.HMPREF9469_01820	87.4	1.35e-20	N/A	N/A
structural_annotation	UHGV-1981043_21	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1981043_22	phrog_5	74.8	1.7e-21	tail completion or Neck1 protein	connector
UniRef90	UHGV-1981043_22	UniRef90_D3ATL6	177.0	0	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-1981043_22	742733.HMPREF9469_01819	168.0	0	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-1981043_22	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-1981043_22	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-1981043_22	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1981043_23	phrog_78	49.0	0.00000000000011	tail terminator	connector
eggNOG-mapper	UHGV-1981043_23	1280689.AUJC01000003_gene971	145.0	1.37327e-43	N/A	N/A
structural_annotation	UHGV-1981043_23	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-1981043_24	phrog_158	81.4	1.6e-23	major tail protein	tail
UniRef90	UHGV-1981043_24	UniRef90_UPI00047F0744	185.0	0	tail protein	N/A
eggNOG-mapper	UHGV-1981043_24	445974.CLORAM_02924	191.0	0	Phage tail tube protein, TTP	N/A
Pfam	UHGV-1981043_24	PF08813	N/A	N/A	Phage tail tube protein, TTP	Phage_tail_3
structural_annotation	UHGV-1981043_24	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1981043_25	phrog_183	60.6	2e-17	tail chaperone protein	tail
UniRef90	UHGV-1981043_25	UniRef90_UPI0008324CF8	144.0	1.74994e-41	N/A	N/A
eggNOG-mapper	UHGV-1981043_25	742733.HMPREF9469_01816	120.0	8.9e-33	N/A	N/A
Pfam	UHGV-1981043_25	PF19591	N/A	N/A	N/A	DUF6096
structural_annotation	UHGV-1981043_25	PF19591	N/A	N/A	N/A	N/A
PHROG	UHGV-1981043_26	phrog_2066	73.6	2.4e-21	N/A	unknown function
PHROG	UHGV-1981043_27	phrog_1535	245.4	0	tail length tape measure protein	tail
UniRef90	UHGV-1981043_27	UniRef90_A0A173WM72	566.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1981043_27	1304866.K413DRAFT_3046	227.0	0	N/A	N/A
COG	UHGV-1981043_27	COG5283	N/A	N/A	Phage-related tail protein	N/A
PHROG	UHGV-1981043_28	phrog_1194	133.1	9.2e-40	N/A	unknown function
eggNOG-mapper	UHGV-1981043_28	997830.HMPREF1124_0608	95.9	4.54e-24	N/A	N/A
Pfam	UHGV-1981043_28	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-1981043_28	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1981043_29	phrog_6616	683.2	0	tail protein	tail
UniRef90	UHGV-1981043_29	UniRef90_A0A412RR71	449.0	0	Tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-1981043_29	476272.RUMHYD_01992	495.0	0	N/A	N/A
structural_annotation	UHGV-1981043_29	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
KOfam	UHGV-1981043_30	K21471	43.3	0.0000000000071	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	N/A
PHROG	UHGV-1981043_30	phrog_14030	131.5	5.3e-39	N/A	unknown function
UniRef90	UHGV-1981043_30	UniRef90_A0A4R4FEU7	210.0	0	NlpC/P60 domain-containing protein	N/A
eggNOG-mapper	UHGV-1981043_30	1163671.JAGI01000002_gene984	178.0	0	Bacteriophage peptidoglycan hydrolase	N/A
Pfam	UHGV-1981043_30	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
COG	UHGV-1981043_30	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-1981043_30	PF05382,NF033742,COG0791	N/A	N/A	N/A	N/A
KOfam	UHGV-1981043_31	K07296	41.5	0.000000000014	ADIPOQ, ACDC; adiponectin	N/A
PHROG	UHGV-1981043_31	phrog_25888	42.9	0.0000000000061	N/A	unknown function
eggNOG-mapper	UHGV-1981043_31	1121866.AUGK01000003_gene1445	87.4	5.16e-18	N/A	N/A
Pfam	UHGV-1981043_31	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
PHROG	UHGV-1981043_32	phrog_21765	62.7	6e-18	N/A	unknown function
eggNOG-mapper	UHGV-1981043_32	1235793.C809_01950	73.2	0.00000000000365	Phage tail-collar fibre protein	N/A
COG	UHGV-1981043_32	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
eggNOG-mapper	UHGV-1981043_33	1232452.BAIB02000007_gene1607	126.0	8.75e-36	N/A	N/A
PHROG	UHGV-1981043_34	phrog_16164	172.2	0	N/A	unknown function
eggNOG-mapper	UHGV-1981043_34	1203606.HMPREF1526_01924	78.2	0.00000000000385	N/A	N/A
Pfam	UHGV-1981043_34	PF19789	N/A	N/A	N/A	DUF6273
KOfam	UHGV-1981043_35	K00986	119.5	3.3e-35	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-1981043_35	phrog_1423	206.6	0	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1981043_35	UniRef90_R9JMD6	276.0	0	Reverse transcriptase domain-containing protein	N/A
eggNOG-mapper	UHGV-1981043_35	397291.C804_00976	276.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
PADLOC	UHGV-1981043_35	icity0040	111.3	1.3e-32	RT (reverse transcriptase)	CRISPR-CAS
Pfam	UHGV-1981043_35	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
COG	UHGV-1981043_35	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-1981043_35	PF00078,MF_01390,TIGR04416,COG3344	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1981043_36	1235797.C816_04174	75.1	0.0000000000000218	N/A	N/A
PHROG	UHGV-1981043_37	phrog_937	46.9	0.00000000000049	hemolysin	other
PHROG	UHGV-1981043_38	phrog_443	61.9	1.7e-17	holin	lysis
UniRef90	UHGV-1981043_38	UniRef90_UPI000C75746C	98.6	1.66e-25	holin	N/A
eggNOG-mapper	UHGV-1981043_38	1235802.C823_05612	88.6	2.77e-22	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-1981043_38	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-1981043_38	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-1981043_39	phrog_355	58.4	1.2e-16	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1981043_39	UniRef90_UPI000E473058	154.0	0	N/A	N/A
eggNOG-mapper	UHGV-1981043_39	397290.C810_05229	153.0	0	N/A	N/A
structural_annotation	UHGV-1981043_39	PF14359	N/A	N/A	N/A	N/A
KOfam	UHGV-1981043_40	K01448	79.2	5.4e-23	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1981043_40	phrog_435	145.1	6.19374e-43	endolysin	lysis
UniRef90	UHGV-1981043_40	UniRef90_A0A6N2UUF0	258.0	0	Autolysin	N/A
eggNOG-mapper	UHGV-1981043_40	552396.HMPREF0863_00263	189.0	0	hmm pf01520	N/A
Pfam	UHGV-1981043_40	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-1981043_40	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-1981043_40	PF01520,PF18342,MF_00417,TIGR02883,COG0860,COG4991	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1981043	Yes	29,794	38	78	1
UHGV-0187407	No	24,264	38	63	1