vOTU vOTU-029863

vOTU: vOTU-029863

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-029863
Number of genomes	2
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00007 → vSUBFAM-00026 → vOTU-029863
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0204581
Biosample ID	N/A
Genome length (bp)	35,819 bps
CheckV completeness	62.77% (Medium-quality)
CDS count	42
CDS density	89.83%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira	Total connections	2020	Host agreement	96.58
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 62.77)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0204581_1	K07699	41.5	0.000000000015	spo0A; two-component system, response regulator, stage 0 sporulation protein A	N/A
UniRef90	UHGV-0204581_1	UniRef90_A0A8D9UIQ5	104.0	3.89e-27	Sporulation initiation factor	N/A
eggNOG-mapper	UHGV-0204581_1	1410617.JHXH01000004_gene1309	52.0	0.00000172	Sporulation initiation factor Spo0A C terminal	N/A
Pfam	UHGV-0204581_1	PF08769	N/A	N/A	Sporulation initiation factor Spo0A C terminal	Spo0A_C
COG	UHGV-0204581_1	COG0745	N/A	N/A	DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain	N/A
structural_annotation	UHGV-0204581_1	PF08769,TIGR02875	N/A	N/A	N/A	N/A
KOfam	UHGV-0204581_2	K01449	71.8	1.2e-20	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0204581_2	phrog_14642	40.0	0.000000000042	endolysin	lysis
UniRef90	UHGV-0204581_2	UniRef90_A0A8D9PGU7	333.0	0	Cell Wall Hydrolase	N/A
eggNOG-mapper	UHGV-0204581_2	742733.HMPREF9469_00034	94.0	1.81e-21	Cell Wall Hydrolase	N/A
Pfam	UHGV-0204581_2	PF07486	N/A	N/A	Cell Wall Hydrolase	Hydrolase_2
COG	UHGV-0204581_2	COG3773	N/A	N/A	Cell wall hydrolase CwlJ, involved in spore germination	N/A
structural_annotation	UHGV-0204581_2	PF07486,TIGR02869,COG3773	N/A	N/A	N/A	N/A
PHROG	UHGV-0204581_3	phrog_463	218.9	0	anti-repressor	transcription regulation
UniRef90	UHGV-0204581_3	UniRef90_A0A8D9PGL6	402.0	0	P22_AR protein	N/A
eggNOG-mapper	UHGV-0204581_3	596329.HMPREF0631_1352	182.0	0	BRO family, N-terminal domain protein	N/A
Pfam	UHGV-0204581_3	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0204581_3	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-0204581_3	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0204581_3	PF10552,PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
KOfam	UHGV-0204581_6	K18830	66.9	3.9e-19	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0204581_6	phrog_8	54.5	0.0000000000000021	transcriptional regulator	transcription regulation
UniRef90	UHGV-0204581_6	UniRef90_R7BIH5	149.0	2.8026e-44	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0204581_6	445972.ANACOL_03315	132.0	2.32e-38	N/A	N/A
Pfam	UHGV-0204581_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0204581_6	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0204581_6	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0204581_7	PF13108	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0204581_8	1234679.BN424_1825	53.9	0.00000206	N/A	N/A
structural_annotation	UHGV-0204581_8	PF03843,MF_01959,TIGR00752,COG3065	N/A	N/A	N/A	N/A
KOfam	UHGV-0204581_9	K07273	155.1	0	acm; lysozyme	N/A
PHROG	UHGV-0204581_9	phrog_291	144.6	8.1976e-43	endolysin	lysis
UniRef90	UHGV-0204581_9	UniRef90_A0A8D9UIP9	828.0	0	Lysozyme	N/A
eggNOG-mapper	UHGV-0204581_9	411470.RUMGNA_00451	195.0	0	COG COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	N/A
Pfam	UHGV-0204581_9	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0204581_9	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-0204581_9	PF01183,NF007404,COG3757	N/A	N/A	N/A	N/A
KOfam	UHGV-0204581_10	K03733	201.5	0	xerC; integrase/recombinase XerC	N/A
PHROG	UHGV-0204581_10	phrog_1	163.6	0	integrase	integration and excision
UniRef90	UHGV-0204581_10	UniRef90_A0A0G9LAR0	208.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0204581_10	518637.EUBIFOR_01343	192.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0204581_10	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-0204581_10	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0204581_10	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0204581_10	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-0204581_12	phrog_2566	51.9	0.0000000000000095	N/A	unknown function
PHROG	UHGV-0204581_13	phrog_6616	143.4	2.52234e-44	tail protein	tail
UniRef90	UHGV-0204581_13	UniRef90_A0A8D9PGP3	1078.0	0	Minor structural protein	N/A
eggNOG-mapper	UHGV-0204581_13	1280692.AUJL01000027_gene2144	159.0	1.39e-36	Phage minor structural protein	N/A
COG	UHGV-0204581_13	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0204581_13	PF16466,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0204581_14	phrog_1401	54.2	0.0000000000000023	N/A	unknown function
structural_annotation	UHGV-0204581_14	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-0204581_15	phrog_1194	57.8	1.5e-16	N/A	unknown function
eggNOG-mapper	UHGV-0204581_15	1232453.BAIF02000058_gene1638	62.0	0.000000000102	N/A	N/A
structural_annotation	UHGV-0204581_15	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0204581_16	phrog_2657	228.4	0	transcriptional regulator	transcription regulation
UniRef90	UHGV-0204581_16	UniRef90_R7BHB1	345.0	0	Phage regulatory protein Rha family	N/A
eggNOG-mapper	UHGV-0204581_16	33035.JPJF01000043_gene993	317.0	0	N/A	N/A
Pfam	UHGV-0204581_16	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
NCBIFam	UHGV-0204581_16	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-0204581_16	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-0204581_16	PF09669,TIGR02681,COG3646	N/A	N/A	N/A	N/A
UniRef90	UHGV-0204581_18	UniRef90_UPI00174DD543	59.3	0.000000000221	CopG family transcriptional regulator	N/A
structural_annotation	UHGV-0204581_18	PF01402,NF041793,COG4710	N/A	N/A	N/A	N/A
UniRef90	UHGV-0204581_19	UniRef90_A0A8D9UIY0	125.0	4.13e-33	N/A	N/A
eggNOG-mapper	UHGV-0204581_19	411459.RUMOBE_01319	59.3	0.0000000394	N/A	N/A
Pfam	UHGV-0204581_19	PF16729	N/A	N/A	N/A	DUF5067
structural_annotation	UHGV-0204581_19	PF16729,MF_00791,TIGR04087,COG2967	N/A	N/A	N/A	N/A
PHROG	UHGV-0204581_20	phrog_28918	160.4	0	N/A	unknown function
UniRef90	UHGV-0204581_20	UniRef90_A0A318EME6	353.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0204581_20	1298920.KI911353_gene2649	268.0	0	tape measure	N/A
COG	UHGV-0204581_20	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
PHROG	UHGV-0204581_22	phrog_36112	70.8	1.4e-20	N/A	unknown function
UniRef90	UHGV-0204581_22	UniRef90_A0A8D9PG71	295.0	0	Tail assembly chaperone protein	N/A
eggNOG-mapper	UHGV-0204581_22	1298920.KI911353_gene2651	123.0	1.7e-33	N/A	N/A
structural_annotation	UHGV-0204581_22	PF10666	N/A	N/A	N/A	N/A
UniRef90	UHGV-0204581_23	UniRef90_A0A8D9PGN2	291.0	0	Major tail protein	N/A
structural_annotation	UHGV-0204581_23	PF16463,TIGR02126,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0204581_24	PF05657	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0204581_25	1298920.KI911353_gene2654	186.0	0	N/A	N/A
AcrCatalog	UHGV-0204581_25	cluster_24841	91.3	3.64e-25	NA	N/A
eggNOG-mapper	UHGV-0204581_26	1298920.KI911353_gene2656	65.9	0.0000000000128	N/A	N/A
structural_annotation	UHGV-0204581_26	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0204581_27	phrog_1129	72.5	3.9e-21	holin	lysis
UniRef90	UHGV-0204581_27	UniRef90_A0A8D9UII9	162.0	0	Holin	N/A
eggNOG-mapper	UHGV-0204581_27	411461.DORFOR_00721	105.0	1.62e-28	N/A	N/A
Pfam	UHGV-0204581_27	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0204581_27	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0204581_28	phrog_4105	93.2	1.9e-27	N/A	unknown function
eggNOG-mapper	UHGV-0204581_28	411459.RUMOBE_00911	161.0	0	N/A	N/A
eggNOG-mapper	UHGV-0204581_29	397290.C810_01402	71.6	0.0000000000000176	N/A	N/A
UniRef90	UHGV-0204581_30	UniRef90_A0A8D9UIY7	168.0	0	Rho termination factor	N/A
structural_annotation	UHGV-0204581_30	PF21169	N/A	N/A	N/A	N/A
PHROG	UHGV-0204581_31	phrog_544	277.6	0	major head protein	head and packaging
UniRef90	UHGV-0204581_31	UniRef90_A0A8D9PGL1	624.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-0204581_31	608534.GCWU000341_02293	328.0	0	N/A	N/A
NCBIFam	UHGV-0204581_31	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0204581_31	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0204581_33	phrog_64	138.8	2.70002e-41	portal protein	head and packaging
UniRef90	UHGV-0204581_33	UniRef90_A0A8D9PG58	1025.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-0204581_33	397290.C810_01397	459.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0204581_33	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0204581_33	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
UniRef90	UHGV-0204581_34	UniRef90_A0A8D9UIR9	157.0	0	RimK-related lysine biosynthesis protein	N/A
PHROG	UHGV-0204581_35	phrog_36	68.4	1.3e-19	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0204581_35	397290.C810_01391	200.0	0	N/A	N/A
structural_annotation	UHGV-0204581_35	PF02996	N/A	N/A	N/A	N/A
PHROG	UHGV-0204581_36	phrog_38	147.5	8.54792e-44	terminase large subunit	head and packaging
UniRef90	UHGV-0204581_36	UniRef90_UPI001D009E65	964.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0204581_36	1121866.AUGK01000003_gene1428	226.0	0	chromosome segregation	N/A
NCBIFam	UHGV-0204581_36	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-0204581_36	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0204581_36	PF17289,PF05876,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
UniRef90	UHGV-0204581_37	UniRef90_UPI0018A09237	82.0	7.73e-18	N/A	N/A
eggNOG-mapper	UHGV-0204581_37	411473.RUMCAL_00360	72.8	0.00000000000000511	N/A	N/A
structural_annotation	UHGV-0204581_37	PF14359,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0204581_38	phrog_1233	86.1	3.7e-25	N/A	unknown function
UniRef90	UHGV-0204581_38	UniRef90_UPI001C39EFB9	156.0	0	Dienelactone hydrolase family protein	N/A
eggNOG-mapper	UHGV-0204581_38	357809.Cphy_2967	99.0	1.5e-24	N/A	N/A
structural_annotation	UHGV-0204581_38	PF13058	N/A	N/A	N/A	N/A
UniRef90	UHGV-0204581_39	UniRef90_A0A8D9PGN8	89.4	7.17e-22	Acetyl-coA carboxylase zinc finger domain protein	N/A
KOfam	UHGV-0204581_40	K01972	550.0	0	E6.5.1.2, ligA, ligB; DNA ligase (NAD+) [EC:6.5.1.2]	N/A
PHROG	UHGV-0204581_40	phrog_3869	557.2	0	NAD-dependent DNA ligase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0204581_40	UniRef90_A0A843FQD5	644.0	0	DNA ligase	N/A
eggNOG-mapper	UHGV-0204581_40	411470.RUMGNA_00017	540.0	0	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA	N/A
Pfam	UHGV-0204581_40	PF01653	N/A	N/A	NAD-dependent DNA ligase adenylation domain	DNA_ligase_aden
Pfam	UHGV-0204581_40	PF03120	N/A	N/A	NAD-dependent DNA ligase OB-fold domain	DNA_ligase_OB
Pfam	UHGV-0204581_40	PF00533	N/A	N/A	BRCA1 C Terminus (BRCT) domain	BRCT
NCBIFam	UHGV-0204581_40	NF005932.1	N/A	N/A	NAD-dependent DNA ligase LigA	N/A
COG	UHGV-0204581_40	COG0272	N/A	N/A	NAD-dependent DNA ligase	N/A
HAMAP	UHGV-0204581_40	MF_01588	N/A	N/A	DNA ligase [ligA]	N/A
structural_annotation	UHGV-0204581_40	PF01653,PF03120,PF00533,MF_01588,NF005932,COG0272	N/A	N/A	N/A	N/A
KOfam	UHGV-0204581_41	K02469	734.4	0	gyrA; DNA gyrase subunit A [EC:5.6.2.2]	N/A
PHROG	UHGV-0204581_41	phrog_551	371.2	0	DNA topoisomerase II	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0204581_41	UniRef90_A0A832SNJ2	571.0	0	DNA topoisomerase (ATP-hydrolyzing)	N/A
eggNOG-mapper	UHGV-0204581_41	1541960.KQ78_01979	473.0	0	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner	N/A
Pfam	UHGV-0204581_41	PF00521	N/A	N/A	DNA gyrase/topoisomerase IV, subunit A	DNA_topoisoIV
Pfam	UHGV-0204581_41	PF03989	N/A	N/A	DNA gyrase C-terminal domain, beta-propeller	DNA_gyraseA_C
COG	UHGV-0204581_41	COG0188	N/A	N/A	DNA gyrase/topoisomerase IV, subunit A	N/A
structural_annotation	UHGV-0204581_41	PF00521,PF03989,MF_01897,NF004043,COG0188	N/A	N/A	N/A	N/A
KOfam	UHGV-0204581_42	K02470	337.3	0	gyrB; DNA gyrase subunit B [EC:5.6.2.2]	N/A
PHROG	UHGV-0204581_42	phrog_543	289.8	0	DNA topoisomerase II large subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0204581_42	UniRef90_A0A3B9Z7X0	323.0	0	DNA topoisomerase (ATP-hydrolyzing)	N/A
eggNOG-mapper	UHGV-0204581_42	500633.CLOHIR_02101	234.0	0	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner	N/A
Pfam	UHGV-0204581_42	PF00204	N/A	N/A	DNA gyrase B	DNA_gyraseB
Pfam	UHGV-0204581_42	PF01751	N/A	N/A	Toprim domain	Toprim
Pfam	UHGV-0204581_42	PF00986	N/A	N/A	DNA gyrase B subunit, carboxyl terminus	DNA_gyraseB_C
COG	UHGV-0204581_42	COG0187	N/A	N/A	DNA gyrase/topoisomerase IV, subunit B	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0204581	Yes	35,819	36	63	1
UHGV-0189848	No	33,668	37	59	1