vOTU vOTU-029880

vOTU: vOTU-029880

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-029880
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Firmicutes_C → Negativicutes → Veillonellales → Dialisteraceae → Dialister → Dialister hominis
Taxonomy (UHGV)	vFAM-00008 → vSUBFAM-00203 → vGENUS-00904 → vOTU-029880
Host lineage	Bacteria → Firmicutes_C → Negativicutes → Veillonellales → Dialisteraceae → Dialister → Dialister hominis
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-2012418
Biosample ID	SAMEA2737771
Genome length (bp)	22,600 bps
CheckV completeness	66.70% (Medium-quality)
CDS count	35
CDS density	94.70%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_C → Negativicutes → Veillonellales → Dialisteraceae → Dialister → Dialister hominis	Total connections	312	Host agreement	83.65
PHIST-predicted host lineage	Bacteria → Firmicutes_C → Negativicutes → Veillonellales → Dialisteraceae → Dialister → Dialister hominis	Total connections	6	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 66.7)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-2012418_1	K14059	199.8	0	int; integrase	N/A
PHROG	UHGV-2012418_1	phrog_1	191.8	0	integrase	integration and excision
UniRef90	UHGV-2012418_1	UniRef90_A0A8D4UTK1	384.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-2012418_1	568816.Acin_1265	264.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-2012418_1	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-2012418_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-2012418_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-2012418_1	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-2012418_3	K01356	129.1	5.1e-38	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-2012418_3	phrog_4	139.1	3.69999e-41	transcriptional repressor	transcription regulation
UniRef90	UHGV-2012418_3	UniRef90_UPI0009F1A07C	202.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-2012418_3	1000569.HMPREF1040_0220	177.0	0	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
PADLOC	UHGV-2012418_3	retron_type_VI_hth_cluster2_1	51.3	0.000000000000025	N/A	Retron
Pfam	UHGV-2012418_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-2012418_3	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-2012418_3	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-2012418_3	PF00717,PF01381,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A
UniRef90	UHGV-2012418_4	UniRef90_UPI0005658318	91.7	5.83e-23	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-2012418_4	1132442.KB889752_gene869	79.0	1.52e-18	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-2012418_4	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
structural_annotation	UHGV-2012418_4	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-2012418_5	K07741	108.3	1.7e-31	antB; anti-repressor protein	N/A
PHROG	UHGV-2012418_5	phrog_130	177.8	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-2012418_5	UniRef90_G4Q2G9	332.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-2012418_5	568816.Acin_1403	332.0	0	Phage antirepressor protein KilAC domain	N/A
Pfam	UHGV-2012418_5	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-2012418_5	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-2012418_5	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-2012418_5	PF03374,PF02498,TIGR02681,COG3617,COG3645	N/A	N/A	N/A	N/A
PHROG	UHGV-2012418_6	phrog_7735	49.2	0.000000000000086	excisionase	integration and excision
Pfam	UHGV-2012418_6	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
structural_annotation	UHGV-2012418_6	PF12728,MF_01155,NF033787,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-2012418_7	phrog_14367	46.5	0.0000000000002	N/A	unknown function
UniRef90	UHGV-2012418_7	UniRef90_A0A1G5VJC5	159.0	0	LysM domain-containing protein	N/A
Pfam	UHGV-2012418_7	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-2012418_7	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-2012418_7	MF_02014,NF010723,COG1388	N/A	N/A	N/A	N/A
PHROG	UHGV-2012418_10	phrog_434	330.0	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2012418_10	UniRef90_S7HTF0	492.0	0	Phage-type endonuclease	N/A
eggNOG-mapper	UHGV-2012418_10	1273103.NM10_01174	492.0	0	YqaJ viral recombinase family protein	N/A
Pfam	UHGV-2012418_10	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-2012418_10	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-2012418_10	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-2012418_10	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
KOfam	UHGV-2012418_11	K07455	309.4	0	recT; recombination protein RecT	N/A
PHROG	UHGV-2012418_11	phrog_148	297.4	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2012418_11	UniRef90_A0A134CHR9	347.0	0	Recombination and repair protein RecT	N/A
eggNOG-mapper	UHGV-2012418_11	1273103.NM10_01169	347.0	0	Recombinase, phage RecT family	N/A
Pfam	UHGV-2012418_11	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-2012418_11	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-2012418_11	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-2012418_11	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-2012418_13	phrog_5708	191.3	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-2012418_13	632245.CLP_2716	148.0	1.92e-40	DnaD domain protein	N/A
COG	UHGV-2012418_13	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-2012418_13	PF09681,TIGR01714	N/A	N/A	N/A	N/A
KOfam	UHGV-2012418_14	K02315	111.2	1.1e-32	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-2012418_14	phrog_50	106.3	3.4e-31	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2012418_14	UniRef90_UPI001D07AA17	345.0	0	DnaA/Hda family protein	N/A
eggNOG-mapper	UHGV-2012418_14	1111454.HMPREF1250_0279	319.0	0	DNA replication protein	N/A
Pfam	UHGV-2012418_14	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-2012418_14	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-2012418_14	PF01695,MF_00377,NF005378,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-2012418_15	phrog_6568	54.5	0.0000000000000016	N/A	unknown function
PHROG	UHGV-2012418_16	phrog_236	76.2	7.4e-22	nucleotide kinase	other
UniRef90	UHGV-2012418_16	UniRef90_UPI001F0F7AF9	160.0	0	N/A	N/A
eggNOG-mapper	UHGV-2012418_16	706434.HMPREF9429_00542	87.0	2.68e-20	N/A	N/A
Pfam	UHGV-2012418_16	PF11753	N/A	N/A	N/A	DUF3310
KOfam	UHGV-2012418_17	K03111	126.8	2.8e-37	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-2012418_17	phrog_44	129.3	2.9e-38	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2012418_17	UniRef90_A0A848EVG3	147.0	4.40008e-43	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-2012418_17	997350.HMPREF9129_1477	126.0	6.29e-35	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-2012418_17	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-2012418_17	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-2012418_17	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-2012418_17	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-2012418_17	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2012418_19	NF034186	N/A	N/A	N/A	N/A
KOfam	UHGV-2012418_20	K01160	40.7	0.000000000055	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-2012418_20	phrog_140	119.5	2.1e-35	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2012418_20	UniRef90_A0A3F2ZSG0	124.0	8.6e-34	Endodeoxyribonuclease RusA family protein	N/A
eggNOG-mapper	UHGV-2012418_20	1123263.AUKY01000072_gene2102	121.0	3.15e-33	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-2012418_20	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-2012418_20	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-2012418_20	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-2012418_22	phrog_36	46.6	0.00000000000063	transcriptional regulator	transcription regulation
COG	UHGV-2012418_22	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-2012418_22	PF08281,TIGR01636,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-2012418_23	phrog_2655	53.0	0.0000000000000064	excisionase	integration and excision
UniRef90	UHGV-2012418_23	UniRef90_C9LP91	85.5	4.52e-20	HTH_59 domain-containing protein	N/A
eggNOG-mapper	UHGV-2012418_23	592028.GCWU000321_01370	85.5	7.58e-21	N/A	N/A
Pfam	UHGV-2012418_23	PF20038	N/A	N/A	Helix-turn-helix domain	HTH_59
structural_annotation	UHGV-2012418_23	PF20038,TIGR01764	N/A	N/A	N/A	N/A
KOfam	UHGV-2012418_25	K07474	64.5	3.7e-18	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-2012418_25	phrog_51	59.5	8.3e-17	terminase small subunit	head and packaging
UniRef90	UHGV-2012418_25	UniRef90_UPI00122EE402	124.0	7.37e-34	terminase small subunit	N/A
eggNOG-mapper	UHGV-2012418_25	1158607.UAU_05157	93.6	9.43e-23	Terminase small subunit	N/A
Pfam	UHGV-2012418_25	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
structural_annotation	UHGV-2012418_25	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-2012418_26	K06909	124.9	7.6e-37	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-2012418_26	phrog_2	103.9	2.5e-30	terminase large subunit	head and packaging
UniRef90	UHGV-2012418_26	UniRef90_UPI001D073785	674.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-2012418_26	401526.TcarDRAFT_1283	318.0	0	Phage terminase large subunit (GpA)	N/A
COG	UHGV-2012418_26	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-2012418_26	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-2012418_28	phrog_156	350.0	0	portal protein	head and packaging
UniRef90	UHGV-2012418_28	UniRef90_F7NK66	372.0	0	Putative phage portal protein	N/A
eggNOG-mapper	UHGV-2012418_28	401526.TcarDRAFT_1284	396.0	0	Tfp pilus assembly protein FimV	N/A
Pfam	UHGV-2012418_28	PF16510	N/A	N/A	Phage P22-like portal protein	P22_portal
COG	UHGV-2012418_28	COG3170	N/A	N/A	Type IV pilus assembly protein FimV	N/A
structural_annotation	UHGV-2012418_28	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
PHROG	UHGV-2012418_30	phrog_334	189.3	0	major head protein	head and packaging
UniRef90	UHGV-2012418_30	UniRef90_UPI00138A4297	407.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-2012418_30	401526.TcarDRAFT_1286	246.0	0	N/A	N/A
Pfam	UHGV-2012418_30	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-2012418_30	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-2012418_30	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2012418_32	PF20387	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2012418_33	1485543.JMME01000005_gene872	332.0	0	N/A	N/A
structural_annotation	UHGV-2012418_33	PF11134,MF_03008,NF010237,TIGR04362,COG4257	N/A	N/A	N/A	N/A
PHROG	UHGV-2012418_34	phrog_24267	71.5	3.4e-25	N/A	unknown function
eggNOG-mapper	UHGV-2012418_34	908340.HMPREF9406_0178	91.7	6.17e-17	N/A	N/A
COG	UHGV-2012418_34	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-2012418_34	PF20747	N/A	N/A	N/A	N/A
PHROG	UHGV-2012418_35	phrog_5717	60.9	1.4e-17	tail protein	tail
eggNOG-mapper	UHGV-2012418_35	742743.HMPREF9453_00547	51.6	0.00000521	tail collar domain protein	N/A
COG	UHGV-2012418_35	COG4675	N/A	N/A	Phage tail collar domain	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-2012418	Yes	22,600	52	67	1
UHGV-0190108	No	21,899	52	65	1