vOTU vOTU-030180

vOTU: vOTU-030180

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-030180
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00001 → vSUBFAM-01095 → vOTU-030180
Host lineage	Bacteria → Firmicutes_C → Negativicutes → Veillonellales → Megasphaeraceae → Megasphaera → Megasphaera elsdenii
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0194853
Biosample ID	SAMN00792033
Genome length (bp)	27,869 bps
CheckV completeness	59.09% (Medium-quality)
CDS count	42
CDS density	90.28%
tRNA count	3
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_C → Negativicutes → Veillonellales → Megasphaeraceae → Megasphaera → Megasphaera elsdenii	Total connections	4	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_C → Negativicutes → Veillonellales → Megasphaeraceae → Megasphaera → Megasphaera sp000417505	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 59.09)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0194853_1	K02434	126.3	2.4e-37	gatB, PET112; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]	N/A
UniRef90	UHGV-0194853_1	UniRef90_A0A7X8DH78	126.0	4.69e-35	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit B	N/A
eggNOG-mapper	UHGV-0194853_1	1273103.NM10_01423	208.0	0	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)	N/A
Pfam	UHGV-0194853_1	PF02637	N/A	N/A	GatB domain	GatB_Yqey
COG	UHGV-0194853_1	COG0064	N/A	N/A	Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit	N/A
UniRef90	UHGV-0194853_2	UniRef90_S7HT07	474.0	0	3-dehydroquinate dehydratase	N/A
eggNOG-mapper	UHGV-0194853_2	1064535.MELS_1576	473.0	0	3-dehydroquinate dehydratase activity	N/A
Pfam	UHGV-0194853_2	PF01487	N/A	N/A	Type I 3-dehydroquinase	DHquinase_I
COG	UHGV-0194853_2	COG0710	N/A	N/A	3-dehydroquinate dehydratase	N/A
KOfam	UHGV-0194853_3	K06400	340.1	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0194853_3	phrog_95	333.5	0	integrase	integration and excision
UniRef90	UHGV-0194853_3	UniRef90_A0A2S0M4L4	436.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0194853_3	718252.FP2_29980	320.0	0	N/A	N/A
Pfam	UHGV-0194853_3	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0194853_3	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0194853_3	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0194853_3	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0194853_3	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-0194853_5	K18830	64.2	2.3e-18	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0194853_5	phrog_8	54.7	0.0000000000000015	transcriptional regulator	transcription regulation
UniRef90	UHGV-0194853_5	UniRef90_A0A512TPN7	104.0	1.38e-25	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0194853_5	1415774.U728_478	98.6	5.83e-24	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0194853_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0194853_5	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
KOfam	UHGV-0194853_8	K07741	96.9	4.5e-28	antB; anti-repressor protein	N/A
PHROG	UHGV-0194853_8	phrog_130	251.6	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0194853_8	UniRef90_A0A2S0M989	299.0	0	Phage antirepressor protein	N/A
eggNOG-mapper	UHGV-0194853_8	575605.ACQN01000003_gene673	260.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0194853_8	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0194853_8	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0194853_8	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0194853_8	PF03374,PF02498,TIGR02681,COG3617,COG3645	N/A	N/A	N/A	N/A
PHROG	UHGV-0194853_11	phrog_25045	109.1	2.1e-32	N/A	unknown function
UniRef90	UHGV-0194853_11	UniRef90_UPI001EF52F1B	95.9	1.22e-23	LysM peptidoglycan-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0194853_11	1273103.NM10_01184	90.9	1.54e-22	LysM domain	N/A
Pfam	UHGV-0194853_11	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-0194853_11	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0194853_11	PF01476,MF_02014,NF010723,COG1388	N/A	N/A	N/A	N/A
KOfam	UHGV-0194853_12	K07319	107.0	1.4e-31	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0194853_12	phrog_16	239.3	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0194853_12	UniRef90_J4UR06	1249.0	0	DNA methylase family protein	N/A
eggNOG-mapper	UHGV-0194853_12	936573.HMPREF1147_1705	1249.0	0	DEAD-like helicases superfamily	N/A
PADLOC	UHGV-0194853_12	MTase_II_00085	47.5	2.4e-18	Type II methyltransferase	RM
Pfam	UHGV-0194853_12	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-0194853_12	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0194853_12	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0194853_12	PF01555,PF16203,PF04851,MF_01821,MF_00472,NF041790,NF008572,COG0553,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0194853_13	phrog_37395	49.7	0.000000000000059	N/A	unknown function
KOfam	UHGV-0194853_15	K03111	142.1	5.4006e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0194853_15	phrog_44	136.6	1.50001e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0194853_15	UniRef90_S7IXD4	159.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0194853_15	1064535.MELS_0571	159.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0194853_15	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0194853_15	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0194853_15	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0194853_15	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0194853_15	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0194853_16	phrog_4074	60.9	1.4e-17	N/A	unknown function
UniRef90	UHGV-0194853_16	UniRef90_V7HYF3	57.4	0.0000000545	Putative bacteriophage protein	N/A
eggNOG-mapper	UHGV-0194853_16	1232428.CAVO010000003_gene1016	70.5	0.000000000000152	N/A	N/A
KOfam	UHGV-0194853_17	K00390	116.0	3.3e-34	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0194853_17	phrog_424	120.9	9.9e-36	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0194853_17	UniRef90_UPI0006C7A7A7	350.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0194853_17	861450.HMPREF0080_02035	329.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
PADLOC	UHGV-0194853_17	BrxP_00001	65.4	4e-19	BrxP	BREX
Pfam	UHGV-0194853_17	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0194853_17	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0194853_17	PF01507,MF_00063,NF003587,COG0175	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0194853_18	861450.HMPREF0080_02035	86.7	1.22e-19	Phosphoadenosine phosphosulfate reductase family	N/A
COG	UHGV-0194853_18	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
UniRef90	UHGV-0194853_19	UniRef90_UPI0010A9BDF5	55.8	0.000000552	N/A	N/A
Pfam	UHGV-0194853_19	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0194853_19	APIS052	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0194853_19	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-0194853_20	phrog_236	90.3	2.1e-26	nucleotide kinase	other
UniRef90	UHGV-0194853_20	UniRef90_UPI001E64390D	54.7	0.00000567	N/A	N/A
eggNOG-mapper	UHGV-0194853_20	447909.A6M9A0_9VIRU	77.8	2.31e-16	N/A	N/A
Pfam	UHGV-0194853_20	PF14359	N/A	N/A	N/A	DUF4406
Pfam	UHGV-0194853_20	PF11753	N/A	N/A	N/A	DUF3310
PHROG	UHGV-0194853_23	phrog_98	52.0	0.0000000000000075	N/A	unknown function
UniRef90	UHGV-0194853_23	UniRef90_A0A853KI76	54.7	0.000000515	YopX domain-containing protein	N/A
Pfam	UHGV-0194853_23	PF09643	N/A	N/A	YopX protein	YopX
structural_annotation	UHGV-0194853_23	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0194853_25	phrog_3584	222.6	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0194853_25	1151292.QEW_0318	176.0	0	N/A	N/A
structural_annotation	UHGV-0194853_25	PF21578	N/A	N/A	N/A	N/A
PHROG	UHGV-0194853_26	phrog_1682	76.6	3.3e-22	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0194853_26	UniRef90_UPI0018FEBB28	117.0	2.39e-31	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0194853_26	1120985.AUMI01000019_gene2247	112.0	5.62e-30	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-0194853_26	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0194853_26	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
UniRef90	UHGV-0194853_27	UniRef90_A0A2S0M9E0	118.0	6.07e-33	N/A	N/A
eggNOG-mapper	UHGV-0194853_27	1273103.NM10_02357	95.5	1.02e-24	Protein conserved in bacteria	N/A
Pfam	UHGV-0194853_27	PF07866	N/A	N/A	N/A	DUF1653
COG	UHGV-0194853_27	COG4728	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0194853_27	PF07866,COG4728	N/A	N/A	N/A	N/A
PHROG	UHGV-0194853_30	phrog_36	56.9	3.7e-16	transcriptional regulator	transcription regulation
KOfam	UHGV-0194853_31	K22014	42.2	0.00000000001	Nu1, Noh; terminase small subunit / prophage DNA-packing protein	N/A
PHROG	UHGV-0194853_31	phrog_57	98.9	6e-29	terminase small subunit	head and packaging
UniRef90	UHGV-0194853_31	UniRef90_A0A840PJQ8	88.2	1.04e-18	Phage terminase Nu1 subunit (DNA packaging protein)	N/A
eggNOG-mapper	UHGV-0194853_31	1273103.NM10_03166	207.0	0	N/A	N/A
COG	UHGV-0194853_31	COG4220	N/A	N/A	Phage DNA packaging protein, Nu1 subunit of terminase	N/A
structural_annotation	UHGV-0194853_31	PF07471,NF040990,COG4220	N/A	N/A	N/A	N/A
KOfam	UHGV-0194853_32	K21512	419.3	0	gpA; terminase, large subunit [EC:3.1.21.4]	N/A
PHROG	UHGV-0194853_32	phrog_15	538.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0194853_32	UniRef90_S7HS25	1035.0	0	Phage terminase large subunit (GpA)	N/A
eggNOG-mapper	UHGV-0194853_32	1273103.NM10_03161	1035.0	0	Phage terminase large subunit (GpA)	N/A
Pfam	UHGV-0194853_32	PF05876	N/A	N/A	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
Pfam	UHGV-0194853_32	PF20454	N/A	N/A	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
COG	UHGV-0194853_32	COG5525	N/A	N/A	Phage terminase, large subunit GpA	N/A
HAMAP	UHGV-0194853_32	MF_04144	N/A	N/A	Terminase, large subunit	N/A
structural_annotation	UHGV-0194853_32	PF05876,PF20454,MF_04144,TIGR01547,COG5525	N/A	N/A	N/A	N/A
PHROG	UHGV-0194853_33	phrog_20934	86.2	2.2e-25	N/A	unknown function
structural_annotation	UHGV-0194853_33	PF19645	N/A	N/A	N/A	N/A
PHROG	UHGV-0194853_34	phrog_21	361.0	0	portal protein	head and packaging
UniRef90	UHGV-0194853_34	UniRef90_S7HSA9	862.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0194853_34	1273103.NM10_03151	862.0	0	Phage portal protein	N/A
Pfam	UHGV-0194853_34	PF05136	N/A	N/A	Phage portal protein, lambda family	Phage_portal_2
NCBIFam	UHGV-0194853_34	TIGR01539.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0194853_34	COG5511	N/A	N/A	Phage capsid protein	N/A
structural_annotation	UHGV-0194853_34	PF05136,MF_04135,TIGR01539,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0194853_35	K01358	131.4	7.3e-39	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0194853_35	phrog_94	181.7	0	head maturation protease	head and packaging
UniRef90	UHGV-0194853_35	UniRef90_S7J3I6	447.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0194853_35	1273103.NM10_03146	447.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0194853_35	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0194853_35	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0194853_35	PF00574,MF_00444,NF011089,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0194853_36	phrog_49	78.7	5.8e-23	head decoration	head and packaging
UniRef90	UHGV-0194853_36	UniRef90_UPI0018C49529	110.0	1.09e-28	head decoration protein	N/A
eggNOG-mapper	UHGV-0194853_36	1273103.NM10_03141	181.0	0	Bacteriophage lambda head decoration protein D	N/A
Pfam	UHGV-0194853_36	PF02924	N/A	N/A	Bacteriophage lambda head decoration protein D	HDPD
structural_annotation	UHGV-0194853_36	PF02924	N/A	N/A	N/A	N/A
PHROG	UHGV-0194853_37	phrog_29	168.8	0	major head protein	head and packaging
UniRef90	UHGV-0194853_37	UniRef90_A0A259UD55	368.0	0	Phage major capsid protein E	N/A
eggNOG-mapper	UHGV-0194853_37	1273103.NM10_03136	598.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0194853_37	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0194853_37	PF03864,MF_04133,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0194853_38	phrog_36232	66.8	2.3e-19	N/A	unknown function
PHROG	UHGV-0194853_39	phrog_36202	151.8	1.4013e-45	N/A	unknown function
eggNOG-mapper	UHGV-0194853_40	1273103.NM10_03121	261.0	0	N/A	N/A
structural_annotation	UHGV-0194853_40	PF05069,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0194853_41	phrog_17431	200.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0194853_41	1273103.NM10_03116	253.0	0	N/A	N/A
PHROG	UHGV-0194853_42	phrog_290	166.5	0	minor tail protein	tail
UniRef90	UHGV-0194853_42	UniRef90_UPI00069D7D9F	369.0	0	phage tail tube protein	N/A
eggNOG-mapper	UHGV-0194853_42	1273103.NM10_03111	554.0	0	N/A	N/A
Pfam	UHGV-0194853_42	PF18906	N/A	N/A	Phage tail tube protein	Phage_tube_2
structural_annotation	UHGV-0194853_42	PF18906,TIGR02241,TIGR02126,COG5437,COG3498	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0194853	Yes	27,869	47	59	1
UHGV-0123015	No	26,264	47	56	1
UHGV-1332813	No	26,264	47	56	1