vOTU vOTU-030197

vOTU: vOTU-030197

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-030197
Number of genomes	3
Taxonomy (ICTV)	Bacteria → Firmicutes_C → Negativicutes → Acidaminococcales → Acidaminococcaceae → Phascolarctobacterium_A → Phascolarctobacterium_A succinatutens
Taxonomy (UHGV)	vFAM-00001 → vSUBFAM-00606 → vGENUS-00606 → vOTU-030197
Host lineage	Bacteria → Firmicutes_C → Negativicutes → Acidaminococcales → Acidaminococcaceae → Phascolarctobacterium_A → Phascolarctobacterium_A succinatutens
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0125807
Biosample ID	SAMN00792094
Genome length (bp)	22,238 bps
CheckV completeness	53.50% (Medium-quality)
CDS count	40
CDS density	92.91%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_C → Negativicutes → Acidaminococcales → Acidaminococcaceae → Phascolarctobacterium_A → Phascolarctobacterium_A succinatutens	Total connections	68	Host agreement	73.53
PHIST-predicted host lineage	Bacteria → Firmicutes_C → Negativicutes → Acidaminococcales → Acidaminococcaceae → Phascolarctobacterium_A → Phascolarctobacterium_A succinatutens	Total connections	81	Host agreement	82.72

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 53.5)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0125807_1	1262914.BN533_01961	167.0	0	Product inferred by homology to UniProt	N/A
KOfam	UHGV-0125807_2	K14059	190.1	0	int; integrase	N/A
PHROG	UHGV-0125807_2	phrog_1	172.7	0	integrase	integration and excision
UniRef90	UHGV-0125807_2	UniRef90_R6J9I2	352.0	0	Integrase family protein	N/A
eggNOG-mapper	UHGV-0125807_2	1262914.BN533_01960	352.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0125807_2	PF13102	N/A	N/A	Phage integrase SAM-like domain	Phage_int_SAM_5
Pfam	UHGV-0125807_2	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0125807_2	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0125807_2	PF00589,PF13102,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0125807_4	phrog_2439	252.8	0	transcriptional regulator	transcription regulation
UniRef90	UHGV-0125807_4	UniRef90_R6XZC0	742.0	0	Possible transcription regulator	N/A
eggNOG-mapper	UHGV-0125807_4	864563.HMPREF9166_0578	314.0	0	IrrE N-terminal-like domain	N/A
Pfam	UHGV-0125807_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0125807_4	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0125807_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0125807_4	PF06114,PF01381,MF_00584,NF038139,COG2856,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0125807_6	K14623	139.4	1.4013e-45	dinD; DNA-damage-inducible protein D	N/A
PHROG	UHGV-0125807_6	phrog_8036	165.5	0	N/A	unknown function
UniRef90	UHGV-0125807_6	UniRef90_A0A3C1INR2	521.0	0	Damage-inducible protein D	N/A
eggNOG-mapper	UHGV-0125807_6	340.xcc-b100_1250	233.0	0	BRO family, N-terminal domain	N/A
PADLOC	UHGV-0125807_6	Specificity_I_00032	154.8	1.4013e-45	Type I specificity subunit	RM
Pfam	UHGV-0125807_6	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
COG	UHGV-0125807_6	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0125807_6	PF09669,NF008573,COG3617	N/A	N/A	N/A	N/A
PHROG	UHGV-0125807_7	phrog_87	93.5	1.6e-27	metallo-protease	other
UniRef90	UHGV-0125807_7	UniRef90_R6WQB8	275.0	0	Peptidase_M78 domain-containing protein	N/A
eggNOG-mapper	UHGV-0125807_7	484770.UFO1_1662	160.0	0	N/A	N/A
Pfam	UHGV-0125807_7	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0125807_7	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0125807_7	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-0125807_8	K22299	52.9	0.000000000000009	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0125807_8	phrog_8	60.6	3.6e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0125807_8	UniRef90_R6WK78	149.0	2.81661e-43	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0125807_8	484770.UFO1_1663	104.0	1.85e-26	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0125807_8	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0125807_8	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0125807_8	PF01381,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0125807_9	UniRef90_A0A3C1INN2	124.0	5.68e-36	N/A	N/A
eggNOG-mapper	UHGV-0125807_9	742723.HMPREF9477_00936	57.8	0.000000000201	Helix-turn-helix	N/A
Pfam	UHGV-0125807_9	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0125807_9	PF05339,NF002773,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0125807_10	phrog_2977	43.8	0.0000000000041	anti-repressor	transcription regulation
UniRef90	UHGV-0125807_10	UniRef90_A0A3D0PT83	53.9	0.0000000149	Toxin-antitoxin system, toxin component, Bro family protein (Fragment)	N/A
eggNOG-mapper	UHGV-0125807_10	718252.FP2_06840	59.3	0.000000000453	BRO family, N-terminal domain	N/A
COG	UHGV-0125807_10	COG3617	N/A	N/A	Prophage antirepressor	N/A
eggNOG-mapper	UHGV-0125807_11	1121272.KB903249_gene1323	46.6	0.00000681	Helix-turn-helix domain	N/A
COG	UHGV-0125807_11	COG3311	N/A	N/A	DNA-binding transcriptional regulator AlpA	N/A
UniRef90	UHGV-0125807_12	UniRef90_R6XZA3	143.0	5.05869e-43	LysM domain protein	N/A
structural_annotation	UHGV-0125807_12	MF_02014,NF010723	N/A	N/A	N/A	N/A
PHROG	UHGV-0125807_15	phrog_2324	155.6	0	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0125807_15	UniRef90_A0A1H6VD67	151.0	7.70714e-43	ERF superfamily protein	N/A
eggNOG-mapper	UHGV-0125807_15	1207076.ALAT01000201_gene1614	142.0	7.98999e-40	ERF superfamily	N/A
Pfam	UHGV-0125807_15	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0125807_15	PF04404,TIGR00607	N/A	N/A	N/A	N/A
PHROG	UHGV-0125807_16	phrog_7566	91.8	4.7e-27	N/A	unknown function
UniRef90	UHGV-0125807_16	UniRef90_A0A374BVG3	75.5	0.0000000000000011	Phosphoenolpyruvate carboxykinase	N/A
eggNOG-mapper	UHGV-0125807_16	411459.RUMOBE_00948	65.9	0.00000000000171	N/A	N/A
PHROG	UHGV-0125807_17	phrog_72	56.7	4.3e-16	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0125807_17	1304866.K413DRAFT_1197	154.0	1.4013e-45	N/A	N/A
structural_annotation	UHGV-0125807_17	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0125807_18	phrog_11233	99.3	1.3e-29	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0125807_18	UniRef90_UPI0018E0FF29	74.7	0.0000000000135	DnaD domain protein	N/A
eggNOG-mapper	UHGV-0125807_18	1399942.U3PDU2_9CAUD	84.0	7.08e-16	calcium ion binding	N/A
structural_annotation	UHGV-0125807_18	PF07106,MF_01819,NF040642,COG1846	N/A	N/A	N/A	N/A
PHROG	UHGV-0125807_19	phrog_9804	57.3	2.6e-16	N/A	unknown function
UniRef90	UHGV-0125807_19	UniRef90_A0A316S7J6	125.0	6.05e-33	Inhibitor_G39P domain-containing protein	N/A
eggNOG-mapper	UHGV-0125807_19	1280706.AUJE01000046_gene1152	58.5	0.0000000372	N/A	N/A
structural_annotation	UHGV-0125807_19	PF11417	N/A	N/A	N/A	N/A
KOfam	UHGV-0125807_21	K03111	127.9	1.3e-37	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0125807_21	phrog_44	138.1	5.90003e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0125807_21	UniRef90_R6WK64	172.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0125807_21	626939.HMPREF9443_01150	149.0	8.40779e-45	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0125807_21	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0125807_21	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0125807_21	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0125807_21	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0125807_21	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0125807_22	phrog_190	141.0	6.39973e-42	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0125807_22	UniRef90_A0A7C6K533	135.0	1.04e-38	N/A	N/A
eggNOG-mapper	UHGV-0125807_22	1347392.CCEZ01000043_gene417	128.0	6.74e-37	N/A	N/A
Pfam	UHGV-0125807_22	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0125807_22	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-0125807_23	phrog_236	102.1	6.7e-30	nucleotide kinase	other
eggNOG-mapper	UHGV-0125807_23	1033743.CAES01000020_gene3148	90.1	1.37e-20	N/A	N/A
Pfam	UHGV-0125807_23	PF11753	N/A	N/A	N/A	DUF3310
PHROG	UHGV-0125807_24	phrog_26484	46.0	0.00000000000086	DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0125807_24	UniRef90_A0A285GC28	73.6	0.00000000000000119	PC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0125807_24	1211817.CCAT010000045_gene3100	69.3	0.00000000000000921	Transcriptional Coactivator p15 (PC4)	N/A
Pfam	UHGV-0125807_24	PF02229	N/A	N/A	Transcriptional Coactivator p15 (PC4)	PC4
COG	UHGV-0125807_24	COG4443	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0125807_24	COG4443	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0125807_31	PF13248	N/A	N/A	N/A	N/A
KOfam	UHGV-0125807_32	K22300	51.8	0.000000000000019	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0125807_32	phrog_8	43.5	0.0000000000078	transcriptional regulator	transcription regulation
Pfam	UHGV-0125807_32	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0125807_32	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
UniRef90	UHGV-0125807_34	UniRef90_A0A6N7WVF3	54.7	0.000000896	Restriction endonuclease subunit S	N/A
PHROG	UHGV-0125807_35	phrog_36	88.5	8.1e-26	transcriptional regulator	transcription regulation
UniRef90	UHGV-0125807_35	UniRef90_R6WQ64	184.0	0	Sigma-70 region 4 domain protein	N/A
eggNOG-mapper	UHGV-0125807_35	469617.FUAG_00831	55.8	0.0000000627	sigma factor activity	N/A
Pfam	UHGV-0125807_35	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
COG	UHGV-0125807_35	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0125807_35	PF07374,MF_00674,NF007227,COG1342	N/A	N/A	N/A	N/A
UniRef90	UHGV-0125807_36	UniRef90_R6X5I6	269.0	0	PhageMetallopep domain-containing protein	N/A
eggNOG-mapper	UHGV-0125807_36	926561.KB900624_gene2638	64.3	0.0000000000905	N/A	N/A
Pfam	UHGV-0125807_36	PF18894	N/A	N/A	Putative phage metallopeptidase	PhageMetallopep
structural_annotation	UHGV-0125807_36	PF18894,COG4900	N/A	N/A	N/A	N/A
PHROG	UHGV-0125807_38	phrog_30251	642.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0125807_38	UniRef90_UPI001F2335B1	646.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0125807_38	1499683.CCFF01000014_gene3915	600.0	0	TIGRFAM Phage	N/A
Pfam	UHGV-0125807_38	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-0125807_38	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-0125807_38	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-0125807_38	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0125807_38	PF17289,PF03237,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
PHROG	UHGV-0125807_39	phrog_145	148.9	1.54143e-44	portal protein	head and packaging
UniRef90	UHGV-0125807_39	UniRef90_R6WQ48	887.0	0	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0125807_39	1232428.CAVO010000021_gene806	325.0	0	N/A	N/A
structural_annotation	UHGV-0125807_39	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0125807_40	phrog_1657	95.1	2.7e-29	head morphogenesis	head and packaging
UniRef90	UHGV-0125807_40	UniRef90_R6AE12	400.0	0	TNT domain-containing protein	N/A
eggNOG-mapper	UHGV-0125807_40	1232428.CAVO010000021_gene805	280.0	0	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0125807	Yes	22,238	46	54	1
UHGV-0195109	No	21,311	46	53	1
UHGV-1424281	No	21,774	46	52	1