vOTU vOTU-030345

vOTU: vOTU-030345

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-030345
Number of genomes	3
Taxonomy (ICTV)	Bacteria → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae → Lactobacillus → Lactobacillus helveticus
Taxonomy (UHGV)	vFAM-00011 → vSUBFAM-03974 → vOTU-030345
Host lineage	Bacteria → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae → Lactobacillus → Lactobacillus helveticus
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1455232
Biosample ID	SAMN05414932
Genome length (bp)	34,485 bps
CheckV completeness	81.25% (Medium-quality)
CDS count	40
CDS density	93.24%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae → Lactobacillus → Lactobacillus helveticus	Total connections	120	Host agreement	95.83
PHIST-predicted host lineage	Bacteria → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae → Lactobacillus → Lactobacillus helveticus	Total connections	2	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 81.25)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1455232_1	phrog_1829	217.6	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1455232_1	UniRef90_X0PBY3	201.0	0	DNA primase/helicase, phage-associated	N/A
eggNOG-mapper	UHGV-1455232_1	12417.Q9T1H6_9CAUD	336.0	0	hydrolase activity	N/A
PHROG	UHGV-1455232_2	phrog_1891	122.5	2.6e-36	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1455232_2	UniRef90_A0A1Y4TYB8	157.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1455232_2	546275.FUSPEROL_02054	118.0	1.76e-31	HNH endonuclease	N/A
Pfam	UHGV-1455232_2	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-1455232_2	PF13392	N/A	N/A	N/A	N/A
PHROG	UHGV-1455232_3	phrog_2044	84.9	5.3e-25	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1455232_3	55601.VANGNB10_cI1635	61.2	0.0000000000286	N/A	N/A
structural_annotation	UHGV-1455232_3	MF_00337,NF010671,COG1722	N/A	N/A	N/A	N/A
PHROG	UHGV-1455232_4	phrog_378	132.8	2.3e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1455232_4	UniRef90_UPI000CD855DC	276.0	0	N/A	N/A
eggNOG-mapper	UHGV-1455232_4	12417.Q9T1H8_9CAUD	278.0	0	N/A	N/A
Pfam	UHGV-1455232_4	PF05037	N/A	N/A	N/A	DUF669
structural_annotation	UHGV-1455232_4	PF05037,MF_00720,NF004948,COG2965	N/A	N/A	N/A	N/A
KOfam	UHGV-1455232_5	K19789	278.5	0	radD; DNA repair protein RadD	N/A
PHROG	UHGV-1455232_5	phrog_16	255.8	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1455232_5	UniRef90_A0A0P0EF07	865.0	0	Helicase	N/A
eggNOG-mapper	UHGV-1455232_5	334390.LAF_0464	525.0	0	Helicase C-terminal domain protein	N/A
PADLOC	UHGV-1455232_5	mREase_IV_00005	86.1	1.7e-26	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-1455232_5	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-1455232_5	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1455232_5	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-1455232_5	PF04851,PF00271,MF_01489,TIGR04095,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-1455232_6	phrog_124	122.3	3.7e-36	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1455232_6	UniRef90_A0A0P0EPN6	435.0	0	DNA-binding protein	N/A
eggNOG-mapper	UHGV-1455232_6	1293597.BN147_08805	257.0	0	AAA domain	N/A
Pfam	UHGV-1455232_6	PF13479	N/A	N/A	AAA domain	AAA_24
NCBIFam	UHGV-1455232_6	TIGR01618.1	N/A	N/A	phage nucleotide-binding protein	N/A
structural_annotation	UHGV-1455232_6	PF13479,MF_00350,TIGR01618,COG1066	N/A	N/A	N/A	N/A
PHROG	UHGV-1455232_8	phrog_7634	52.2	0.0000000000000096	N/A	unknown function
KOfam	UHGV-1455232_12	K07741	149.9	3.36312e-44	antB; anti-repressor protein	N/A
PHROG	UHGV-1455232_12	phrog_130	295.0	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1455232_12	UniRef90_A0A2V4EN93	461.0	0	Phage repressor protein/antirepressor Ant	N/A
eggNOG-mapper	UHGV-1455232_12	1206110.L0P8P6_9CAUD	352.0	0	DNA binding	N/A
Pfam	UHGV-1455232_12	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-1455232_12	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
structural_annotation	UHGV-1455232_12	PF03374,PF02498,TIGR02681,COG3645	N/A	N/A	N/A	N/A
PHROG	UHGV-1455232_13	phrog_1337	48.2	0.00000000000015	DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1455232_13	UniRef90_UPI00156726A0	123.0	1.08e-35	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1455232_13	936580.HMPREF1516_0746	59.7	0.0000000000276	N/A	N/A
structural_annotation	UHGV-1455232_13	PF21291,TIGR04111,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1455232_14	phrog_8	53.4	0.0000000000000063	transcriptional regulator	transcription regulation
UniRef90	UHGV-1455232_14	UniRef90_UPI001566EB11	235.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1455232_14	272621.LBA0896	72.4	0.00000000000000673	Cro/C1-type HTH DNA-binding domain	N/A
COG	UHGV-1455232_14	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1455232_14	PF12844,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1455232_15	phrog_87	56.6	3.8e-16	metallo-protease	other
UniRef90	UHGV-1455232_15	UniRef90_A0A2V4F639	215.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-1455232_15	1423815.BACR01000010_gene590	63.5	0.0000000000412	Zn peptidase	N/A
COG	UHGV-1455232_15	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-1455232_15	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-1455232_17	K14059	181.7	0	int; integrase	N/A
PHROG	UHGV-1455232_17	phrog_1	170.5	0	integrase	integration and excision
UniRef90	UHGV-1455232_17	UniRef90_UPI001565264B	757.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-1455232_17	1423758.BN55_09130	327.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1455232_17	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-1455232_17	PF13102	N/A	N/A	Phage integrase SAM-like domain	Phage_int_SAM_5
Pfam	UHGV-1455232_17	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1455232_17	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1455232_17	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-1455232_18	K07273	140.7	1.29998e-41	acm; lysozyme	N/A
PHROG	UHGV-1455232_18	phrog_291	241.8	0	endolysin	lysis
UniRef90	UHGV-1455232_18	UniRef90_UPI0015642BA7	542.0	0	lysin	N/A
eggNOG-mapper	UHGV-1455232_18	891391.LAC30SC_06450	412.0	0	hydrolase, family 25	N/A
Pfam	UHGV-1455232_18	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1455232_18	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1455232_18	PF01183,NF033379,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-1455232_19	phrog_2609	85.7	4.3e-25	holin	lysis
UniRef90	UHGV-1455232_19	UniRef90_UPI001563025A	226.0	0	phage holin	N/A
eggNOG-mapper	UHGV-1455232_19	891391.LAC30SC_06455	180.0	0	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-1455232_19	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
NCBIFam	UHGV-1455232_19	TIGR01673.1	N/A	N/A	phage holin	N/A
structural_annotation	UHGV-1455232_19	PF09682,TIGR01673	N/A	N/A	N/A	N/A
UniRef90	UHGV-1455232_20	UniRef90_UPI000D7C40CF	62.0	0.0000000000105	XkdX family protein	N/A
Pfam	UHGV-1455232_20	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
PHROG	UHGV-1455232_21	phrog_34343	107.4	1.2e-31	N/A	unknown function
PHROG	UHGV-1455232_25	phrog_4467	193.6	0	N/A	unknown function
UniRef90	UHGV-1455232_25	UniRef90_UPI001A9C66A1	351.0	0	N/A	N/A
eggNOG-mapper	UHGV-1455232_25	1122147.AUEH01000027_gene2733	80.1	0.000000000000652	N/A	N/A
PHROG	UHGV-1455232_26	phrog_3335	62.3	5.6e-18	N/A	unknown function
PHROG	UHGV-1455232_27	phrog_12493	847.1	0	tail protein	tail
UniRef90	UHGV-1455232_27	UniRef90_UPI001564747C	1981.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-1455232_27	1423767.BALU01000006_gene762	919.0	0	Phage minor structural protein	N/A
Pfam	UHGV-1455232_27	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1455232_27	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1455232_27	COG4926	N/A	N/A	Phage-related protein	N/A
UniRef90	UHGV-1455232_28	UniRef90_UPI001C2674D2	488.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-1455232_28	1423767.BALU01000006_gene763	142.0	2.01e-38	phage tail	N/A
COG	UHGV-1455232_28	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1455232_28	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-1455232_29	K21471	60.5	4.9e-17	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	N/A
PHROG	UHGV-1455232_29	phrog_167	438.2	0	tail length tape measure protein	tail
UniRef90	UHGV-1455232_29	UniRef90_UPI001563B117	2303.0	0	tape measure protein	N/A
eggNOG-mapper	UHGV-1455232_29	1423767.BALU01000006_gene765	691.0	0	domain protein	N/A
Pfam	UHGV-1455232_29	PF20155	N/A	N/A	Tape measure protein	TMP_3
Pfam	UHGV-1455232_29	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
NCBIFam	UHGV-1455232_29	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-1455232_29	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-1455232_29	PF10145,COG3953	N/A	N/A	N/A	N/A
PHROG	UHGV-1455232_30	phrog_1346	64.6	1.8e-18	tail protein	tail
UniRef90	UHGV-1455232_30	UniRef90_UPI001D07AA30	59.3	0.00000000637	phage tail assembly chaperone	N/A
Pfam	UHGV-1455232_30	PF06896	N/A	N/A	Phage tail assembly chaperone proteins, TAC	Phage_TAC_3
structural_annotation	UHGV-1455232_30	PF06896	N/A	N/A	N/A	N/A
PHROG	UHGV-1455232_31	phrog_88	92.0	4.4e-27	major tail protein	tail
UniRef90	UHGV-1455232_31	UniRef90_UPI001565966F	338.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-1455232_31	1225795.K4I1X5_9CAUD	80.5	7.8e-16	Pfam:Phage_TTP_1	N/A
Pfam	UHGV-1455232_31	PF04630	N/A	N/A	Phage tail tube protein	Phage_TTP_1
structural_annotation	UHGV-1455232_31	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1455232_32	phrog_1217	66.8	3.4e-19	tail protein	tail
UniRef90	UHGV-1455232_32	UniRef90_UPI0013FD96F9	219.0	0	N/A	N/A
Pfam	UHGV-1455232_32	PF05657	N/A	N/A	N/A	DUF806
structural_annotation	UHGV-1455232_32	PF05657,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-1455232_33	phrog_5	47.3	0.00000000000048	tail completion or Neck1 protein	connector
UniRef90	UHGV-1455232_33	UniRef90_UPI001565BE74	268.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1455232_33	941770.GL622178_gene353	51.2	0.00000486	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-1455232_33	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-1455232_33	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-1455232_33	PF05069,TIGR01725	N/A	N/A	N/A	N/A
UniRef90	UHGV-1455232_34	UniRef90_UPI0015642772	228.0	0	head-tail adaptor protein	N/A
Pfam	UHGV-1455232_34	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
structural_annotation	UHGV-1455232_34	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-1455232_35	UniRef90_UPI00156308FF	214.0	0	head-tail connector protein	N/A
eggNOG-mapper	UHGV-1455232_35	1423758.BN55_04270	96.3	3.49e-24	Phage gp6-like head-tail connector protein	N/A
NCBIFam	UHGV-1455232_35	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-1455232_35	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1455232_36	phrog_10	206.7	0	major head protein	head and packaging
UniRef90	UHGV-1455232_36	UniRef90_UPI001564703E	735.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-1455232_36	12417.Q9T1F6_9CAUD	440.0	0	peptidase activity	N/A
Pfam	UHGV-1455232_36	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1455232_36	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-1455232_36	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-1455232_37	K01358	138.7	5.49996e-41	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1455232_37	phrog_94	231.9	0	head maturation protease	head and packaging
UniRef90	UHGV-1455232_37	UniRef90_UPI00156740AD	451.0	0	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-1455232_37	12417.Q9T1F7_9CAUD	288.0	0	Clp protease	N/A
Pfam	UHGV-1455232_37	PF00574	N/A	N/A	Clp protease	CLP_protease
structural_annotation	UHGV-1455232_37	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1455232_38	phrog_12	175.4	0	portal protein	head and packaging
UniRef90	UHGV-1455232_38	UniRef90_UPI001565E29F	743.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1455232_38	1423758.BN55_04255	409.0	0	Phage portal protein	N/A
Pfam	UHGV-1455232_38	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1455232_38	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1455232_38	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1455232_38	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1455232_39	phrog_9	312.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-1455232_39	UniRef90_UPI0015630082	1213.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-1455232_39	1423758.BN55_04245	755.0	0	Phage Terminase	N/A
Pfam	UHGV-1455232_39	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1455232_39	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1455232_39	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1455232_39	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1455232_40	phrog_83	42.3	0.000000000015	terminase small subunit	head and packaging
UniRef90	UHGV-1455232_40	UniRef90_A0A437SY47	128.0	2.79e-36	Phage terminase small subunit P27 family	N/A
eggNOG-mapper	UHGV-1455232_40	12417.Q9T1G0_9CAUD	118.0	4.18e-33	Phage terminase, small subunit	N/A
Pfam	UHGV-1455232_40	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
NCBIFam	UHGV-1455232_40	TIGR01558.1	N/A	N/A	phage terminase small subunit P27 family	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1455232	Yes	34,485	37	81	1
UHGV-1459463	No	33,922	37	80	1
UHGV-0197708	No	23,712	38	62	1