vOTU vOTU-030370

vOTU: vOTU-030370

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-030370
Number of genomes	3
Taxonomy (ICTV)	Bacteria → Actinobacteriota → Coriobacteriia → Coriobacteriales
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-04943 → vGENUS-09641 → vOTU-030370
Host lineage	Bacteria → Actinobacteriota → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella
Host range breadth	Genus
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0141510
Biosample ID	N/A
Genome length (bp)	23,489 bps
CheckV completeness	53.96% (Medium-quality)
CDS count	27
CDS density	94.97%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Actinobacteriota → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella	Total connections	8	Host agreement	100
PHIST-predicted host lineage	Bacteria → Actinobacteriota → Coriobacteriia → Coriobacteriales	Total connections	7	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 53.96)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-0141510_1	PF20075,TIGR02612,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0141510_2	K14060	117.5	1.6e-34	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-0141510_2	phrog_125	135.0	5.4e-40	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0141510_2	UniRef90_A0A415UWC2	383.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0141510_2	1121866.AUGK01000003_gene1426	230.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0141510_2	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-0141510_2	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0141510_2	PF00239,PF02796,NF009949,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-0141510_4	phrog_38	189.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-0141510_4	UniRef90_UPI0013EC3644	725.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0141510_4	1121866.AUGK01000003_gene1428	705.0	0	chromosome segregation	N/A
NCBIFam	UHGV-0141510_4	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-0141510_4	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0141510_4	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-0141510_5	phrog_64	199.8	0	portal protein	head and packaging
UniRef90	UHGV-0141510_5	UniRef90_A0A415UWA9	1019.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0141510_5	1121866.AUGK01000003_gene1429	607.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0141510_5	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0141510_5	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0141510_6	phrog_172	40.8	0.000000000027	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0141510_6	1232453.BAIF02000058_gene1626	70.1	0.00000000000404	N/A	N/A
PHROG	UHGV-0141510_7	phrog_247	251.8	0	major head protein	head and packaging
UniRef90	UHGV-0141510_7	UniRef90_A0A415UWC4	658.0	0	Coat protein	N/A
eggNOG-mapper	UHGV-0141510_7	1304866.K413DRAFT_3038	319.0	0	N/A	N/A
structural_annotation	UHGV-0141510_7	PF20036,MF_04113,TIGR04387,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0141510_9	UniRef90_A0A415UWB6	206.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0141510_9	1298920.KI911353_gene2658	52.8	0.000000188	N/A	N/A
Pfam	UHGV-0141510_9	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-0141510_9	TIGR01560	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0141510_10	1121866.AUGK01000003_gene1432	121.0	3.76e-33	N/A	N/A
UniRef90	UHGV-0141510_11	UniRef90_A0A415UWA8	299.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0141510_11	476272.RUMHYD_01963	66.2	0.0000000000289	N/A	N/A
structural_annotation	UHGV-0141510_11	PF17395,TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0141510_12	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0141510_13	phrog_158	45.4	0.0000000000016	major tail protein	tail
UniRef90	UHGV-0141510_13	UniRef90_A0A415UWD3	279.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0141510_13	1232453.BAIF02000058_gene1634	63.2	0.000000000112	N/A	N/A
structural_annotation	UHGV-0141510_13	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-0141510_14	UniRef90_A0A415UWB5	219.0	0	N/A	N/A
Pfam	UHGV-0141510_14	PF16478	N/A	N/A	N/A	DUF5055
eggNOG-mapper	UHGV-0141510_15	469596.HMPREF9488_01312	50.8	0.00000109	N/A	N/A
PHROG	UHGV-0141510_16	phrog_1535	166.8	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0141510_16	1121866.AUGK01000003_gene1437	672.0	0	phage tail tape measure protein	N/A
COG	UHGV-0141510_16	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
PHROG	UHGV-0141510_17	phrog_1194	77.0	2e-22	N/A	unknown function
eggNOG-mapper	UHGV-0141510_17	1121866.AUGK01000003_gene1438	152.0	0	N/A	N/A
structural_annotation	UHGV-0141510_17	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0141510_18	phrog_6616	466.2	0	tail protein	tail
UniRef90	UHGV-0141510_18	UniRef90_A0A6N9JL18	742.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0141510_18	1121866.AUGK01000003_gene1439	475.0	0	Phage minor structural protein	N/A
COG	UHGV-0141510_18	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0141510_18	PF05113,PF18957,PF01835,MF_04116,NF033848,NF038186,COG4926	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0141510_19	445975.COLSTE_02152	89.0	5.04e-21	N/A	N/A
eggNOG-mapper	UHGV-0141510_20	1121866.AUGK01000003_gene1445	72.4	0.0000000000021	N/A	N/A
PHROG	UHGV-0141510_21	phrog_17147	252.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0141510_21	1680.BADO_1222	198.0	0	N/A	N/A
structural_annotation	UHGV-0141510_21	PF21430	N/A	N/A	N/A	N/A
KOfam	UHGV-0141510_22	K00986	63.3	3.7e-18	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-0141510_22	phrog_1423	120.6	1.5e-35	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0141510_22	UniRef90_A0A415UWB9	665.0	0	Reverse transcriptase domain-containing protein	N/A
eggNOG-mapper	UHGV-0141510_22	33035.JPJF01000043_gene1000	176.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
Pfam	UHGV-0141510_22	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
COG	UHGV-0141510_22	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-0141510_22	PF00078,MF_01390,TIGR04416,COG3344	N/A	N/A	N/A	N/A
NCBIFam	UHGV-0141510_24	NF040910.1	N/A	N/A	CD1375 family protein	N/A
structural_annotation	UHGV-0141510_24	NF040910	N/A	N/A	N/A	N/A
PHROG	UHGV-0141510_26	phrog_962	74.2	2.1e-21	holin	lysis
UniRef90	UHGV-0141510_26	UniRef90_A0A415UWD0	159.0	0	Phage holin	N/A
eggNOG-mapper	UHGV-0141510_26	887929.HMP0721_1251	87.8	1.39e-21	Bacteriophage holin	N/A
Pfam	UHGV-0141510_26	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-0141510_26	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-0141510_26	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0141510_26	COG5546	N/A	N/A	N/A	N/A
PHROG	UHGV-0141510_27	phrog_32635	153.6	1.4013e-45	N/A	unknown function
UniRef90	UHGV-0141510_27	UniRef90_A0A374TRJ0	492.0	0	Amidase_5 domain-containing protein	N/A
eggNOG-mapper	UHGV-0141510_27	1235792.C808_00573	146.0	2.31e-39	N/A	N/A
Pfam	UHGV-0141510_27	PF05382	N/A	N/A	Bacteriophage peptidoglycan hydrolase	Amidase_5
structural_annotation	UHGV-0141510_27	PF05382	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0141510	Yes	23,489	65	54	1
UHGV-1380005	No	23,489	65	54	1
UHGV-0198225	No	19,836	65	44	1