vOTU vOTU-030689

vOTU: vOTU-030689

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-030689
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Lactococcus → Lactococcus lactis
Taxonomy (UHGV)	vFAM-00011 → vOTU-030689
Host lineage	Bacteria → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Lactococcus → Lactococcus lactis
Host range breadth	Species
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0204196
Biosample ID	N/A
Genome length (bp)	26,283 bps
CheckV completeness	75.99% (Medium-quality)
CDS count	38
CDS density	97.35%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A	Total connections	2	Host agreement	50
PHIST-predicted host lineage	Bacteria → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Lactococcus → Lactococcus lactis	Total connections	3	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 75.99)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0204196_1	phrog_10512	324.1	0	virion structural protein	head and packaging
UniRef90	UHGV-0204196_1	UniRef90_UPI001A95B8CC	187.0	0	BppU family phage baseplate upper protein	N/A
eggNOG-mapper	UHGV-0204196_1	1231377.C426_0890	296.0	0	N/A	N/A
Pfam	UHGV-0204196_1	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
PHROG	UHGV-0204196_2	phrog_1067	420.5	0	minor head protein	head and packaging
UniRef90	UHGV-0204196_2	UniRef90_A0A8I2HI54	1358.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0204196_2	1231377.C426_0891	991.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0204196_2	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
Pfam	UHGV-0204196_2	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
NCBIFam	UHGV-0204196_2	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0204196_2	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0204196_2	PF14594,PF13884,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0204196_3	phrog_33	77.8	1.9e-22	distal tail protein Dit	tail
UniRef90	UHGV-0204196_3	UniRef90_A0A0V8CYX8	481.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0204196_3	1231377.C426_0892	377.0	0	phage tail	N/A
NCBIFam	UHGV-0204196_3	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0204196_3	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0204196_3	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0204196_4	phrog_24198	552.7	0	N/A	unknown function
UniRef90	UHGV-0204196_4	UniRef90_A0A8I2HC46	642.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0204196_4	374526.A5GYM8_9CAUD	514.0	0	N/A	N/A
PHROG	UHGV-0204196_5	phrog_706	223.3	0	N/A	unknown function
UniRef90	UHGV-0204196_5	UniRef90_A0A0V8EKB6	442.0	0	N/A	N/A
eggNOG-mapper	UHGV-0204196_5	374526.A5GYM7_9CAUD	442.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0204196_5	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0204196_5	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0204196_6	phrog_1061	84.5	1.2e-24	N/A	unknown function
UniRef90	UHGV-0204196_6	UniRef90_A0A0V8CZ27	247.0	0	N/A	N/A
KOfam	UHGV-0204196_7	K20846	59.3	4.4e-17	cgkA; kappa-carrageenase [EC:3.2.1.83]	N/A
PHROG	UHGV-0204196_7	phrog_820	157.1	0	major tail protein	tail
UniRef90	UHGV-0204196_7	UniRef90_A0A0V8CZ42	449.0	0	Phage major tail shaft protein	N/A
eggNOG-mapper	UHGV-0204196_7	374526.A5GYM5_9CAUD	292.0	0	N/A	N/A
Pfam	UHGV-0204196_7	PF02368	N/A	N/A	Bacterial Ig-like domain (group 2)	Big_2
structural_annotation	UHGV-0204196_7	PF06199,PF02368,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0204196_8	phrog_913	123.7	7.6e-37	minor head protein	head and packaging
UniRef90	UHGV-0204196_8	UniRef90_A0A0V8CZP2	275.0	0	N/A	N/A
Pfam	UHGV-0204196_8	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
PHROG	UHGV-0204196_9	phrog_556	75.2	7e-22	minor head protein	head and packaging
UniRef90	UHGV-0204196_9	UniRef90_A0A0V8CYW8	216.0	0	N/A	N/A
eggNOG-mapper	UHGV-0204196_9	1134413.ANNK01000120_gene2022	56.2	0.0000000122	Minor capsid protein	N/A
structural_annotation	UHGV-0204196_9	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0204196_10	phrog_793	96.2	2.3e-28	head-tail adaptor	connector
UniRef90	UHGV-0204196_10	UniRef90_A0A0V8EJR5	218.0	0	N/A	N/A
eggNOG-mapper	UHGV-0204196_10	374526.A5GYM2_9CAUD	218.0	0	Minor capsid protein	N/A
Pfam	UHGV-0204196_10	PF10665	N/A	N/A	Minor capsid protein	Minor_capsid_1
structural_annotation	UHGV-0204196_10	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0204196_11	phrog_541	100.2	1.3e-29	head-tail adaptor	connector
UniRef90	UHGV-0204196_11	UniRef90_A0A0V8EJU1	227.0	0	Protein gp8	N/A
eggNOG-mapper	UHGV-0204196_11	374526.A5GYM1_9CAUD	232.0	0	N/A	N/A
PHROG	UHGV-0204196_12	phrog_215	78.2	1.7e-22	structural protein with Ig domain	head and packaging
UniRef90	UHGV-0204196_12	UniRef90_A0A2Z3KHI4	119.0	1.23e-33	BIG2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0204196_12	1231377.C426_2212	89.0	2.03e-22	domain, Protein	N/A
Pfam	UHGV-0204196_12	PF02368	N/A	N/A	Bacterial Ig-like domain (group 2)	Big_2
COG	UHGV-0204196_12	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0204196_12	PF02368,TIGR04225	N/A	N/A	N/A	N/A
PHROG	UHGV-0204196_13	phrog_1623	226.3	0	virion structural protein	head and packaging
UniRef90	UHGV-0204196_13	UniRef90_A0A0V8EJR0	464.0	0	Phage capsid and scaffold	N/A
eggNOG-mapper	UHGV-0204196_13	1231377.C426_2211	406.0	0	domain, Protein	N/A
Pfam	UHGV-0204196_13	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
COG	UHGV-0204196_13	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0204196_13	PF05125,MF_04119,TIGR01551,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0204196_14	phrog_3017	314.9	0	head maturation protease	head and packaging
UniRef90	UHGV-0204196_14	UniRef90_A5GYR6	587.0	0	Peptidase_S78_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0204196_14	374526.A5GYL8_9CAUD	587.0	0	Pfam:Peptidase_S78_2	N/A
Pfam	UHGV-0204196_14	PF14550	N/A	N/A	Putative phage serine protease XkdF	Peptidase_S78_2
structural_annotation	UHGV-0204196_14	PF14550	N/A	N/A	N/A	N/A
PHROG	UHGV-0204196_15	phrog_2468	257.5	0	head morphogenesis	head and packaging
UniRef90	UHGV-0204196_15	UniRef90_A5GYR5	534.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0204196_15	1231377.C426_2209	375.0	0	Phage Mu protein F like protein	N/A
Pfam	UHGV-0204196_15	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0204196_15	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0204196_15	PF06152,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-0204196_16	phrog_12	218.4	0	portal protein	head and packaging
UniRef90	UHGV-0204196_16	UniRef90_A0A1B1IM25	970.0	0	Putative portal protein	N/A
eggNOG-mapper	UHGV-0204196_16	374526.A5GYL6_9CAUD	976.0	0	Phage portal protein	N/A
Pfam	UHGV-0204196_16	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0204196_16	TIGR01540.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-0204196_16	PF04860,MF_04120,TIGR01540,COG5518	N/A	N/A	N/A	N/A
PHROG	UHGV-0204196_17	phrog_38	379.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-0204196_17	UniRef90_G6FD64	963.0	0	Terminase_6C domain-containing protein	N/A
eggNOG-mapper	UHGV-0204196_17	374526.A5GYP8_9CAUD	967.0	0	intein-mediated protein splicing	N/A
Pfam	UHGV-0204196_17	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-0204196_17	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-0204196_17	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
structural_annotation	UHGV-0204196_17	PF17289,PF05876,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-0204196_18	phrog_309	212.7	0	terminase small subunit	head and packaging
UniRef90	UHGV-0204196_18	UniRef90_Q02ZF6	279.0	0	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0204196_18	374526.A5GYP7_9CAUD	306.0	0	endonuclease activity	N/A
structural_annotation	UHGV-0204196_18	PF07141	N/A	N/A	N/A	N/A
PHROG	UHGV-0204196_19	phrog_2198	166.2	0	Alt-like transcription activator	transcription regulation
UniRef90	UHGV-0204196_19	UniRef90_A0A0V8DXT1	257.0	0	N/A	N/A
eggNOG-mapper	UHGV-0204196_19	1229517.AMFD01000018_gene191	72.0	0.0000000000000243	N/A	N/A
Pfam	UHGV-0204196_19	PF05263	N/A	N/A	N/A	DUF722
structural_annotation	UHGV-0204196_19	PF05263,MF_00674,TIGR01636,COG1595	N/A	N/A	N/A	N/A
PHROG	UHGV-0204196_21	phrog_8817	88.1	6.3e-26	N/A	unknown function
UniRef90	UHGV-0204196_21	UniRef90_A0A2Z5Z6C1	70.1	0.0000000000000115	N/A	N/A
structural_annotation	UHGV-0204196_21	MF_00273,NF010188	N/A	N/A	N/A	N/A
PHROG	UHGV-0204196_22	phrog_9438	174.8	0	anti-repressor	transcription regulation
UniRef90	UHGV-0204196_22	UniRef90_Q38109	306.0	0	ORF23	N/A
eggNOG-mapper	UHGV-0204196_22	1399942.U3PCU6_9CAUD	59.7	0.0000000197	DNA binding	N/A
Pfam	UHGV-0204196_22	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
PHROG	UHGV-0204196_23	phrog_2670	71.6	6.8e-21	N/A	unknown function
UniRef90	UHGV-0204196_23	UniRef90_A0A7T3CDC1	107.0	2.02e-29	N/A	N/A
Pfam	UHGV-0204196_23	PF07874	N/A	N/A	N/A	DUF1660
PHROG	UHGV-0204196_24	phrog_2882	313.5	0	DNA methyltransferase	other
UniRef90	UHGV-0204196_24	UniRef90_A0A0V8E6V9	535.0	0	Putative C5 methylase (MAV1virus-like)	N/A
eggNOG-mapper	UHGV-0204196_24	565653.EGBG_01954	230.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
Pfam	UHGV-0204196_24	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0204196_24	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0204196_24	PF00145,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0204196_25	phrog_3808	116.8	6.7e-35	N/A	unknown function
UniRef90	UHGV-0204196_25	UniRef90_A0A1W6JKT3	136.0	5.78e-39	Glycosyltransferase	N/A
PHROG	UHGV-0204196_26	phrog_6209	73.5	2.1e-21	N/A	unknown function
UniRef90	UHGV-0204196_26	UniRef90_A0A1V0P3K7	140.0	4.69001e-41	N/A	N/A
UniRef90	UHGV-0204196_27	UniRef90_A0A1V0P397	284.0	0	N/A	N/A
KOfam	UHGV-0204196_28	K01520	72.5	6.3e-21	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-0204196_28	phrog_135	90.7	1.5e-26	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0204196_28	UniRef90_A0A2A5SYT7	189.0	0	Aminotransferase	N/A
eggNOG-mapper	UHGV-0204196_28	1229517.AMFD01000023_gene1330	192.0	0	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	N/A
Pfam	UHGV-0204196_28	PF00692	N/A	N/A	dUTPase	dUTPase
COG	UHGV-0204196_28	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-0204196_28	PF00692,MF_00116,NF010561,COG0756	N/A	N/A	N/A	N/A
PHROG	UHGV-0204196_29	phrog_6648	70.8	1.2e-20	N/A	unknown function
UniRef90	UHGV-0204196_29	UniRef90_Q9AZU4	70.9	0.000000000000067	Orf28	N/A
PHROG	UHGV-0204196_30	phrog_121	107.0	1.2e-31	N/A	unknown function
UniRef90	UHGV-0204196_30	UniRef90_UPI001CE244E3	246.0	0	N/A	N/A
eggNOG-mapper	UHGV-0204196_30	1229517.AMFD01000023_gene1331	234.0	0	N/A	N/A
Pfam	UHGV-0204196_30	PF07852	N/A	N/A	N/A	DUF1642
structural_annotation	UHGV-0204196_30	PF07852	N/A	N/A	N/A	N/A
PHROG	UHGV-0204196_31	phrog_98	110.4	1.1e-32	N/A	unknown function
UniRef90	UHGV-0204196_31	UniRef90_A0A199YQC9	189.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0204196_31	201846.B5SP14_9CAUD	185.0	0	YopX protein	N/A
Pfam	UHGV-0204196_31	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0204196_31	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0204196_31	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0204196_32	phrog_5080	164.8	0	N/A	unknown function
UniRef90	UHGV-0204196_32	UniRef90_Q9MC28	140.0	3.1305e-42	ORF68a	N/A
KOfam	UHGV-0204196_33	K01160	57.9	2.8e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0204196_33	phrog_34	71.3	1.4e-20	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0204196_33	UniRef90_H5T0I2	263.0	0	Prophage pi1 protein 15	N/A
eggNOG-mapper	UHGV-0204196_33	272623.L56509	263.0	0	N/A	N/A
structural_annotation	UHGV-0204196_33	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0204196_34	phrog_7699	152.7	0	N/A	unknown function
UniRef90	UHGV-0204196_34	UniRef90_D2BK81	182.0	0	N/A	N/A
PHROG	UHGV-0204196_35	phrog_270	181.2	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0204196_35	UniRef90_A0A0M2ZTQ1	501.0	0	Trehalose operon repressor, treR	N/A
eggNOG-mapper	UHGV-0204196_35	420890.LCGL_1154	377.0	0	N/A	N/A
Pfam	UHGV-0204196_35	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0204196_35	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0204196_35	PF13730,MF_01909,NF040939,COG1846	N/A	N/A	N/A	N/A
PHROG	UHGV-0204196_36	phrog_959	83.9	1.2e-24	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0204196_36	UniRef90_S6F5Q7	224.0	0	Phage protein, putative DNA endonuclease	N/A
eggNOG-mapper	UHGV-0204196_36	1229517.AMFD01000018_gene205	185.0	0	HNH endonuclease domain protein	N/A
PADLOC	UHGV-0204196_36	HEase_00016	40.0	0.00000000011	homing endonuclease	RM
Pfam	UHGV-0204196_36	PF13392	N/A	N/A	HNH endonuclease	HNH_3
PHROG	UHGV-0204196_37	phrog_124	86.2	3.9e-25	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0204196_37	UniRef90_A0A0B8R0C7	559.0	0	Predicted ATP-dependent serine protease	N/A
Pfam	UHGV-0204196_37	PF13479	N/A	N/A	AAA domain	AAA_24
PHROG	UHGV-0204196_38	phrog_1227	93.2	2.3e-27	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0204196_38	UniRef90_D3LCD3	318.0	0	N/A	N/A
Pfam	UHGV-0204196_38	PF12705	N/A	N/A	PD-(D/E)XK nuclease superfamily	PDDEXK_1

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0204196	Yes	26,283	36	76	1
UHGV-1967301	No	22,090	36	64	1