vOTU vOTU-030690

vOTU: vOTU-030690

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-030690
Number of genomes	2
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00013 → vGENUS-00205 → vOTU-030690
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1360679
Biosample ID	N/A
Genome length (bp)	33,227 bps
CheckV completeness	78.89% (Medium-quality)
CDS count	53
CDS density	91.77%
tRNA count	3
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	279	Host agreement	97.49
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 78.89)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1360679_4	phrog_757	187.9	0	DNA methyltransferase	other
UniRef90	UHGV-1360679_4	UniRef90_UPI000F638571	276.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1360679_4	748224.HMPREF9436_03069	288.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1360679_4	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1360679_4	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-1360679_5	phrog_424	91.4	8.8e-27	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-1360679_5	445972.ANACOL_01819	448.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
COG	UHGV-1360679_5	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1360679_5	PF01507,MF_00064,TIGR00434,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-1360679_6	K01160	58.0	2.7e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1360679_6	phrog_34	59.0	9.5e-17	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1360679_6	UniRef90_A0A844DBG8	233.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1360679_6	875454.BAEW01000002_gene491	134.0	3.63e-39	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1360679_6	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1360679_6	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1360679_6	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1360679_8	phrog_36	49.5	0.000000000000077	transcriptional regulator	transcription regulation
structural_annotation	UHGV-1360679_8	PF07374,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-1360679_9	K06909	335.6	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1360679_9	phrog_3717	140.7	7.90052e-42	terminase large subunit	head and packaging
UniRef90	UHGV-1360679_9	UniRef90_A0A1Y4ES07	503.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1360679_9	665956.HMPREF1032_02957	470.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1360679_9	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
Pfam	UHGV-1360679_9	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1360679_9	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1360679_9	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1360679_9	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1360679_9	PF04466,PF16677,PF17289,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1360679_10	phrog_64	124.3	3.8e-37	portal protein	head and packaging
UniRef90	UHGV-1360679_10	UniRef90_A0A6N7TNT3	483.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1360679_10	673376.F2VHW1_9CAUD	169.0	1.82169e-44	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1360679_10	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1360679_10	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-1360679_12	phrog_2468	79.5	2.8e-23	head morphogenesis	head and packaging
UniRef90	UHGV-1360679_12	UniRef90_A0A844DBI4	622.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-1360679_12	1504822.CCNO01000013_gene286	133.0	8.06e-32	cell adhesion	N/A
Pfam	UHGV-1360679_12	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-1360679_12	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1360679_12	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1360679_14	phrog_8680	200.7	0	N/A	unknown function
UniRef90	UHGV-1360679_14	UniRef90_A0A844D688	456.0	0	N/A	N/A
eggNOG-mapper	UHGV-1360679_14	1423790.BN53_04265	181.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
Pfam	UHGV-1360679_14	PF14386	N/A	N/A	N/A	DUF4417
COG	UHGV-1360679_14	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1360679_14	PF14386	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1360679_15	PF17599,PF14282,NF011879	N/A	N/A	N/A	N/A
PHROG	UHGV-1360679_17	phrog_5	51.7	0.000000000000022	tail completion or Neck1 protein	connector
UniRef90	UHGV-1360679_17	UniRef90_A0A844DDB3	295.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1360679_17	1123309.AQYB01000018_gene814	91.3	1.59e-21	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-1360679_17	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-1360679_17	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1360679_19	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1360679_20	phrog_544	141.1	8.00001e-42	major head protein	head and packaging
UniRef90	UHGV-1360679_20	UniRef90_R0BKA1	432.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1360679_20	476272.RUMHYD_01776	324.0	0	N/A	N/A
structural_annotation	UHGV-1360679_20	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-1360679_22	phrog_17977	49.7	0.000000000000051	N/A	unknown function
UniRef90	UHGV-1360679_22	UniRef90_A0A844DHJ8	227.0	0	Phage head closure protein	N/A
structural_annotation	UHGV-1360679_22	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1360679_23	PF13554	N/A	N/A	N/A	N/A
PHROG	UHGV-1360679_24	phrog_885	65.4	7.6e-19	major tail protein	tail
UniRef90	UHGV-1360679_24	UniRef90_A0A843J9F0	129.0	1.81e-33	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1360679_24	457396.CSBG_01054	57.8	0.000000185	Chitobiase/beta-hexosaminidase C-terminal domain	N/A
COG	UHGV-1360679_24	COG2273	N/A	N/A	Beta-glucanase, GH16 family	N/A
structural_annotation	UHGV-1360679_24	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1360679_27	phrog_28775	141.0	8.2004e-42	tail length tape measure protein	tail
UniRef90	UHGV-1360679_27	UniRef90_A0A844DDD5	1065.0	0	Tape measure protein	N/A
eggNOG-mapper	UHGV-1360679_27	1492737.FEM08_12070	144.0	4.24e-33	tape measure	N/A
Pfam	UHGV-1360679_27	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-1360679_27	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-1360679_27	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1360679_27	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
UniRef90	UHGV-1360679_28	UniRef90_R6QN45	86.3	3.4e-17	Putative phage tail component domain protein	N/A
eggNOG-mapper	UHGV-1360679_28	411490.ANACAC_00709	78.6	0.00000000000000447	phage tail	N/A
COG	UHGV-1360679_28	COG4722	N/A	N/A	Phage-related protein YomH	N/A
eggNOG-mapper	UHGV-1360679_29	411490.ANACAC_00709	56.6	0.000000231	phage tail	N/A
COG	UHGV-1360679_29	COG4722	N/A	N/A	Phage-related protein YomH	N/A
PHROG	UHGV-1360679_30	phrog_3558	200.7	0	tail protein	tail
UniRef90	UHGV-1360679_30	UniRef90_A0A844DGT5	170.0	7.78982e-42	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1360679_30	1235799.C818_04233	104.0	5.67e-21	Prophage endopeptidase tail	N/A
Pfam	UHGV-1360679_30	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-1360679_30	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1360679_30	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-1360679_31	phrog_11541	124.7	8e-37	N/A	unknown function
UniRef90	UHGV-1360679_31	UniRef90_UPI001E3B00C2	192.0	0	SGNH/GDSL hydrolase family protein	N/A
eggNOG-mapper	UHGV-1360679_31	279808.SH2335	78.2	0.00000000000161	GDSL-like Lipase/Acylhydrolase family	N/A
Pfam	UHGV-1360679_31	PF13472	N/A	N/A	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
COG	UHGV-1360679_31	COG2755	N/A	N/A	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	N/A
KOfam	UHGV-1360679_32	K07273	169.7	0	acm; lysozyme	N/A
PHROG	UHGV-1360679_32	phrog_291	131.3	9.4e-39	endolysin	lysis
UniRef90	UHGV-1360679_32	UniRef90_UPI001D0EE7D8	296.0	0	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-1360679_32	748224.HMPREF9436_00154	277.0	0	hydrolase, family 25	N/A
Pfam	UHGV-1360679_32	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1360679_32	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1360679_32	PF01183,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-1360679_33	phrog_1863	76.7	1.7e-22	N/A	unknown function
eggNOG-mapper	UHGV-1360679_33	718252.FP2_04900	146.0	5.60519e-45	N/A	N/A
PHROG	UHGV-1360679_34	phrog_15303	83.2	2.4e-24	N/A	unknown function
PHROG	UHGV-1360679_35	phrog_1384	113.0	2.7e-33	Mom-like DNA modification protein	other
eggNOG-mapper	UHGV-1360679_35	665956.HMPREF1032_03086	203.0	0	COG NOG12663 non supervised orthologous group	N/A
structural_annotation	UHGV-1360679_35	PF11124,MF_02210,NF040502,COG3818	N/A	N/A	N/A	N/A
PHROG	UHGV-1360679_37	phrog_3754	92.2	5e-27	N/A	unknown function
eggNOG-mapper	UHGV-1360679_37	1485543.JMME01000025_gene2462	102.0	7.97e-27	N/A	N/A
PHROG	UHGV-1360679_38	phrog_21718	117.7	8.5e-35	N/A	unknown function
eggNOG-mapper	UHGV-1360679_38	397290.C810_05210	99.4	2.7e-24	N/A	N/A
PHROG	UHGV-1360679_39	phrog_22984	77.6	9.9e-23	N/A	unknown function
PHROG	UHGV-1360679_40	phrog_16490	149.3	2.10195e-44	N/A	unknown function
eggNOG-mapper	UHGV-1360679_40	1408437.JNJN01000043_gene803	141.0	2.38e-38	N/A	N/A
PHROG	UHGV-1360679_42	phrog_20016	217.8	0	N/A	unknown function
UniRef90	UHGV-1360679_42	UniRef90_A0A285PT46	207.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1360679_42	1226322.HMPREF1545_00077	188.0	0	N/A	N/A
structural_annotation	UHGV-1360679_42	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1360679_43	476272.RUMHYD_01772	51.6	0.00000361	N/A	N/A
structural_annotation	UHGV-1360679_43	PF12510	N/A	N/A	N/A	N/A
KOfam	UHGV-1360679_45	K14059	118.3	1.1e-34	int; integrase	N/A
PHROG	UHGV-1360679_45	phrog_1	104.1	1.7e-30	integrase	integration and excision
UniRef90	UHGV-1360679_45	UniRef90_UPI00130DFBFE	730.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-1360679_45	748224.HMPREF9436_03382	627.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1360679_45	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1360679_45	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1360679_45	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1360679_45	PF00589,PF14659,MF_01808,NF007246,COG4973	N/A	N/A	N/A	N/A
UniRef90	UHGV-1360679_46	UniRef90_A0A6N7TLT0	338.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1360679_46	266265.Bxe_A3948	53.5	0.000000347	Helix-turn-helix domain	N/A
Pfam	UHGV-1360679_46	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1360679_46	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1360679_46	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1360679_49	phrog_888	67.8	2.2e-36	N/A	unknown function
UniRef90	UHGV-1360679_49	UniRef90_A0A6N7TMA2	402.0	0	SHOCT domain-containing protein	N/A
eggNOG-mapper	UHGV-1360679_49	1151292.QEW_1347	87.0	1.08e-17	Short C-terminal domain	N/A
Pfam	UHGV-1360679_49	PF14471	N/A	N/A	N/A	DUF4428
Pfam	UHGV-1360679_49	PF09851	N/A	N/A	Short C-terminal domain	SHOCT
structural_annotation	UHGV-1360679_49	PF15947,PF14471	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1360679_52	PF21441,TIGR04176,COG1846	N/A	N/A	N/A	N/A
Pfam	UHGV-1360679_53	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1360679_53	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1360679_53	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1360679	Yes	33,227	53	79	1
UHGV-0204207	No	34,383	53	82	1