vOTU vOTU-030749

vOTU: vOTU-030749

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-030749
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00001 → vOTU-030749
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_F → Ruminococcus_F champanellensis
Host range breadth	Species
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0205517
Biosample ID	SAMN09781787
Genome length (bp)	29,945 bps
CheckV completeness	75.87% (Medium-quality)
CDS count	52
CDS density	91.59%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_F → Ruminococcus_F champanellensis	Total connections	22	Host agreement	77.27
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_F → Ruminococcus_F champanellensis	Total connections	43	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 75.87)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0205517_2	K06400	45.2	0.0000000000012	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0205517_2	phrog_95	40.3	0.000000000031	integrase	integration and excision
UniRef90	UHGV-0205517_2	UniRef90_UPI00059E3664	191.0	0	recombinase family protein	N/A
Pfam	UHGV-0205517_2	PF07508	N/A	N/A	Recombinase	Recombinase
COG	UHGV-0205517_2	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
PHROG	UHGV-0205517_5	phrog_13890	59.6	4.2e-17	N/A	unknown function
UniRef90	UHGV-0205517_5	UniRef90_A0A413FUM2	69.3	0.0000000000000243	Antitoxin	N/A
eggNOG-mapper	UHGV-0205517_5	1507.HMPREF0262_00298	58.2	0.00000000013	N/A	N/A
structural_annotation	UHGV-0205517_5	PF10723,NF010256,COG4710	N/A	N/A	N/A	N/A
KOfam	UHGV-0205517_6	K08640	87.1	3.5e-28	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-0205517_6	phrog_2649	84.1	1.1e-24	endolysin	lysis
UniRef90	UHGV-0205517_6	UniRef90_UPI0006D154CD	455.0	0	peptidoglycan-binding protein	N/A
eggNOG-mapper	UHGV-0205517_6	1384066.JAGT01000001_gene920	159.0	4.06377e-44	hydrolase, family 25	N/A
Pfam	UHGV-0205517_6	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
Pfam	UHGV-0205517_6	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0205517_6	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0205517_6	PF05951,PF01471,COG3108,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0205517_7	phrog_13256	70.2	1.9e-20	N/A	unknown function
eggNOG-mapper	UHGV-0205517_7	641112.ACOK01000073_gene2912	73.9	6.02e-17	N/A	N/A
PHROG	UHGV-0205517_9	phrog_1067	208.5	0	minor head protein	head and packaging
UniRef90	UHGV-0205517_9	UniRef90_UPI0011C788B1	668.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0205517_9	1567011.A0A0A7RUI9_9VIRU	181.0	0	N-acetylmuramoyl-L-alanine amidase activity	N/A
Pfam	UHGV-0205517_9	PF18994	N/A	N/A	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
Pfam	UHGV-0205517_9	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0205517_9	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
structural_annotation	UHGV-0205517_9	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
UniRef90	UHGV-0205517_11	UniRef90_R5ADI0	105.0	2.78e-24	Putative phage tail component	N/A
eggNOG-mapper	UHGV-0205517_11	1121342.AUCO01000004_gene648	83.2	1.95e-16	tail component	N/A
COG	UHGV-0205517_11	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0205517_11	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0205517_12	phrog_6900	264.0	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0205517_12	536233.CLO_1577	332.0	0	tape measure	N/A
COG	UHGV-0205517_12	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0205517_12	MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-0205517_13	phrog_706	137.1	9.70007e-41	N/A	unknown function
UniRef90	UHGV-0205517_13	UniRef90_D4LDZ1	383.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0205517_13	641112.ACOK01000073_gene2903	139.0	2.95e-39	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0205517_13	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0205517_13	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0205517_14	phrog_4450	86.9	2.3e-25	N/A	unknown function
eggNOG-mapper	UHGV-0205517_14	641112.ACOK01000073_gene2902	103.0	1.35e-26	N/A	N/A
Pfam	UHGV-0205517_14	PF20378	N/A	N/A	N/A	DUF6673
structural_annotation	UHGV-0205517_14	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-0205517_15	phrog_3099	137.8	5.99994e-41	N/A	unknown function
eggNOG-mapper	UHGV-0205517_15	641112.ACOK01000073_gene2900	137.0	5.04e-39	N/A	N/A
structural_annotation	UHGV-0205517_15	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0205517_16	phrog_3266	146.0	1.09301e-43	tail completion	connector
UniRef90	UHGV-0205517_16	UniRef90_A0A355UZ60	152.0	5.60519e-45	Chloramphenicol resistance protein	N/A
eggNOG-mapper	UHGV-0205517_16	641112.ACOK01000073_gene2899	134.0	1.08e-38	N/A	N/A
structural_annotation	UHGV-0205517_16	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0205517_17	phrog_556	116.2	1.3e-34	minor head protein	head and packaging
UniRef90	UHGV-0205517_17	UniRef90_D4LDZ5	256.0	0	Minor capsid	N/A
eggNOG-mapper	UHGV-0205517_17	641112.ACOK01000073_gene2898	117.0	1.88e-32	Minor capsid protein	N/A
Pfam	UHGV-0205517_17	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0205517_17	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0205517_18	phrog_3366	115.6	3.2e-34	N/A	unknown function
eggNOG-mapper	UHGV-0205517_18	411490.ANACAC_00775	90.5	2.22e-21	N/A	N/A
Pfam	UHGV-0205517_18	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0205517_18	PF20536	N/A	N/A	N/A	N/A
PHROG	UHGV-0205517_19	phrog_541	92.0	5.2e-27	head-tail adaptor	connector
eggNOG-mapper	UHGV-0205517_19	642492.Clole_0822	82.8	8.89e-19	N/A	N/A
PHROG	UHGV-0205517_20	phrog_267	95.2	4e-28	major head protein	head and packaging
UniRef90	UHGV-0205517_20	UniRef90_D4LDZ8	670.0	0	p22 coat protein-gene protein 5	N/A
eggNOG-mapper	UHGV-0205517_20	718252.FP2_06660	273.0	0	N/A	N/A
structural_annotation	UHGV-0205517_20	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0205517_21	phrog_194	58.4	1.6e-16	head scaffolding protein	head and packaging
UniRef90	UHGV-0205517_21	UniRef90_D4LDZ9	334.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0205517_21	411473.RUMCAL_01929	137.0	1.49e-38	Phage minor structural protein GP20	N/A
Pfam	UHGV-0205517_21	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0205517_21	PF06810,MF_02110	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0205517_22	PF06442,MF_01194,NF000331,COG5475	N/A	N/A	N/A	N/A
PHROG	UHGV-0205517_23	phrog_581	286.7	0	minor head protein	head and packaging
UniRef90	UHGV-0205517_23	UniRef90_D4LE01	762.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0205517_23	641112.ACOK01000073_gene2890	383.0	0	N/A	N/A
Pfam	UHGV-0205517_23	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0205517_23	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0205517_23	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0205517_24	phrog_533	297.1	0	portal protein	head and packaging
UniRef90	UHGV-0205517_24	UniRef90_D4LE02	902.0	0	Phage portal protein, SPP1 Gp6-like	N/A
eggNOG-mapper	UHGV-0205517_24	411473.RUMCAL_01924	306.0	0	N/A	N/A
structural_annotation	UHGV-0205517_24	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0205517_25	K06909	146.1	3.19496e-43	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0205517_25	phrog_2	145.6	5.29691e-43	terminase large subunit	head and packaging
UniRef90	UHGV-0205517_25	UniRef90_D4LE03	847.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-0205517_25	411473.RUMCAL_01923	516.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0205517_25	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-0205517_25	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-0205517_25	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0205517_25	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0205517_25	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-0205517_26	UniRef90_W0U9H3	82.0	6.37e-17	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0205517_26	1160721.RBI_II00544	82.0	1.07e-17	N/A	N/A
KOfam	UHGV-0205517_27	K05785	73.1	3.9e-21	rfaH; transcriptional antiterminator RfaH	N/A
PHROG	UHGV-0205517_27	phrog_6386	82.4	5.8e-24	transcription antiterminator	transcription regulation
UniRef90	UHGV-0205517_27	UniRef90_D4LE05	325.0	0	Transcription antiterminator	N/A
eggNOG-mapper	UHGV-0205517_27	411473.RUMCAL_01920	103.0	5.11e-26	Transcription termination factor nusG	N/A
Pfam	UHGV-0205517_27	PF02357	N/A	N/A	Transcription termination factor nusG	NusG
COG	UHGV-0205517_27	COG0250	N/A	N/A	Transcription termination/antitermination protein NusG	N/A
structural_annotation	UHGV-0205517_27	PF02357,MF_00951,NF033641,COG0250	N/A	N/A	N/A	N/A
PHROG	UHGV-0205517_28	phrog_426	96.4	3.8e-28	terminase small subunit	head and packaging
UniRef90	UHGV-0205517_28	UniRef90_UPI001D05DC57	175.0	0	N/A	N/A
eggNOG-mapper	UHGV-0205517_28	411473.RUMCAL_01919	199.0	0	N/A	N/A
Pfam	UHGV-0205517_28	PF11985	N/A	N/A	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
structural_annotation	UHGV-0205517_28	PF11985	N/A	N/A	N/A	N/A
PHROG	UHGV-0205517_29	phrog_25462	126.5	8.8e-38	N/A	unknown function
UniRef90	UHGV-0205517_29	UniRef90_UPI001D071891	124.0	8.96e-35	type VI secretion protein	N/A
eggNOG-mapper	UHGV-0205517_29	1160721.RBI_II00547	124.0	1.6e-35	N/A	N/A
structural_annotation	UHGV-0205517_29	PF01638,MF_01819,NF002926,COG1733	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0205517_30	1160721.RBI_II00548	57.8	0.000000000655	N/A	N/A
PHROG	UHGV-0205517_31	phrog_532	60.2	4e-17	late transcriptional activator	transcription regulation
UniRef90	UHGV-0205517_31	UniRef90_R7ACX3	205.0	0	Mor transcription activator family	N/A
eggNOG-mapper	UHGV-0205517_31	665956.HMPREF1032_04096	87.4	5.26e-21	Mor transcription activator family	N/A
Pfam	UHGV-0205517_31	PF08765	N/A	N/A	Mor transcription activator family	Mor
COG	UHGV-0205517_31	COG5566	N/A	N/A	Transcriptional regulator, middle operon regulator (Mor) family	N/A
structural_annotation	UHGV-0205517_31	PF08765,NF040785,COG5566	N/A	N/A	N/A	N/A
PHROG	UHGV-0205517_33	phrog_286	75.2	1.2e-21	N/A	unknown function
UniRef90	UHGV-0205517_33	UniRef90_A0A367GGT8	89.7	1.18e-19	Regulatory protein GemA	N/A
eggNOG-mapper	UHGV-0205517_33	445972.ANACOL_00525	87.8	1.22e-19	N/A	N/A
Pfam	UHGV-0205517_33	PF06252	N/A	N/A	Bacteriophage Mu, GemA protein	GemA
structural_annotation	UHGV-0205517_33	PF06252	N/A	N/A	N/A	N/A
PHROG	UHGV-0205517_38	phrog_270	68.1	1.8e-19	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0205517_38	411473.RUMCAL_01913	88.2	2.18e-21	HNH endonuclease	N/A
COG	UHGV-0205517_38	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0205517_39	phrog_5671	105.9	3.1e-31	N/A	unknown function
eggNOG-mapper	UHGV-0205517_39	411473.RUMCAL_01912	151.0	1.4013e-45	N/A	N/A
PHROG	UHGV-0205517_40	phrog_6244	60.4	4.2e-17	N/A	unknown function
COG	UHGV-0205517_40	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
KOfam	UHGV-0205517_43	K02450	63.2	3.6e-18	gspA; general secretion pathway protein A	N/A
PHROG	UHGV-0205517_43	phrog_296	122.7	4e-36	DNA transposition protein	integration and excision
UniRef90	UHGV-0205517_43	UniRef90_R7A4Z5	589.0	0	AAA domain protein	N/A
eggNOG-mapper	UHGV-0205517_43	411473.RUMCAL_01909	305.0	0	AAA domain	N/A
Pfam	UHGV-0205517_43	PF13401	N/A	N/A	AAA domain	AAA_22
COG	UHGV-0205517_43	COG2842	N/A	N/A	Bacteriophage DNA transposition protein, AAA+ family ATPase	N/A
structural_annotation	UHGV-0205517_43	PF13401,MF_01407,TIGR03015,COG2842	N/A	N/A	N/A	N/A
KOfam	UHGV-0205517_44	K07497	47.5	0.00000000000028	K07497; putative transposase	N/A
PHROG	UHGV-0205517_44	phrog_310	336.2	0	transposase	integration and excision
UniRef90	UHGV-0205517_44	UniRef90_R7AIY9	1184.0	0	Integrase core domain protein	N/A
eggNOG-mapper	UHGV-0205517_44	411473.RUMCAL_01908	684.0	0	Mu transposase, C-terminal	N/A
Pfam	UHGV-0205517_44	PF09039	N/A	N/A	Mu DNA binding, I gamma subdomain	HTH_Tnp_Mu_2
Pfam	UHGV-0205517_44	PF09299	N/A	N/A	Mu transposase, C-terminal	Mu-transpos_C
COG	UHGV-0205517_44	COG2801	N/A	N/A	Transposase InsO and inactivated derivatives	N/A
structural_annotation	UHGV-0205517_44	PF02914,PF09039,PF09299,PF21531,NF033594,TIGR01764,COG3316,COG3311	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0205517_45	PF04012	N/A	N/A	N/A	N/A
KOfam	UHGV-0205517_47	K22300	67.3	3.4e-19	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0205517_47	phrog_5823	52.3	0.0000000000000095	transcriptional regulator	transcription regulation
UniRef90	UHGV-0205517_47	UniRef90_R7ACZ6	110.0	2.33e-30	Transcriptional regulator XRE family	N/A
eggNOG-mapper	UHGV-0205517_47	1298880.AUEV01000014_gene3658	55.8	0.0000000215	Transcriptional regulator	N/A
PADLOC	UHGV-0205517_47	retron_type_VI_hth_cluster2_1	51.7	0.000000000000027	N/A	Retron
Pfam	UHGV-0205517_47	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0205517_47	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-0205517_49	phrog_750	83.0	2.6e-24	N/A	unknown function
eggNOG-mapper	UHGV-0205517_49	742723.HMPREF9477_00931	94.0	1.39e-23	N/A	N/A
structural_annotation	UHGV-0205517_49	PF13835,NF040858	N/A	N/A	N/A	N/A
KOfam	UHGV-0205517_51	K01356	77.9	2.1e-22	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0205517_51	phrog_4	76.1	7.2e-22	transcriptional repressor	transcription regulation
UniRef90	UHGV-0205517_51	UniRef90_R7AIZ9	250.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0205517_51	1160721.RBI_II00559	110.0	1.18e-27	Peptidase S24-like	N/A
Pfam	UHGV-0205517_51	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0205517_51	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
eggNOG-mapper	UHGV-0205517_52	1514668.JOOA01000002_gene2180	53.1	0.0000000548	The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB	N/A
Pfam	UHGV-0205517_52	PF07499	N/A	N/A	RuvA, C-terminal domain	RuvA_C
COG	UHGV-0205517_52	COG0632	N/A	N/A	Holliday junction resolvasome RuvABC DNA-binding subunit	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0205517	Yes	29,945	55	76	1
UHGV-0172144	No	29,694	56	75	1
UHGV-0042669	No	19,533	56	49	1