vOTU vOTU-030971

vOTU: vOTU-030971

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-030971
Number of genomes	3
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → CAG-115
Taxonomy (UHGV)	vFAM-00060 → vSUBFAM-01202 → vOTU-030971
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → CAG-115
Host range breadth	Genus
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0020743
Biosample ID	N/A
Genome length (bp)	29,673 bps
CheckV completeness	78.31% (Medium-quality)
CDS count	43
CDS density	93.46%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → CAG-115 → ERR7738170_bin.151	Total connections	2	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → CAG-115	Total connections	11	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 78.31)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0020743_1	K07727	65.5	1.3e-18	K07727; putative transcriptional regulator	N/A
PHROG	UHGV-0020743_1	phrog_3	42.2	0.000000000031	transcriptional repressor	transcription regulation
UniRef90	UHGV-0020743_1	UniRef90_A0A1C6CHW2	75.9	1.16e-16	Conjugal transfer protein TrbA	N/A
eggNOG-mapper	UHGV-0020743_1	1160721.RBI_II00518	68.9	0.00000000000000714	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0020743_1	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0020743_1	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0020743_1	PF13443,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0020743_2	K06223	209.5	0	dam; DNA adenine methylase [EC:2.1.1.72]	N/A
PHROG	UHGV-0020743_2	phrog_56	176.8	0	DNA methyltransferase	other
UniRef90	UHGV-0020743_2	UniRef90_A0A1C6CIL1	347.0	0	Site-specific DNA-methyltransferase (adenine-specific)	N/A
eggNOG-mapper	UHGV-0020743_2	931626.Awo_c34920	321.0	0	D12 class N6 adenine-specific DNA methyltransferase	N/A
PADLOC	UHGV-0020743_2	MTase_II_00039	144.0	2.10055e-42	Type II methyltransferase	RM
Pfam	UHGV-0020743_2	PF02086	N/A	N/A	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
COG	UHGV-0020743_2	COG0338	N/A	N/A	DNA-adenine methylase	N/A
structural_annotation	UHGV-0020743_2	PF02086,MF_01872,NF008152,COG0338	N/A	N/A	N/A	N/A
KOfam	UHGV-0020743_3	K01447	88.9	8.6e-26	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0020743_3	phrog_9611	105.4	6e-31	endolysin	lysis
UniRef90	UHGV-0020743_3	UniRef90_R5GLE2	153.0	1.82169e-44	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0020743_3	1042156.CXIVA_17490	117.0	3.87e-30	Ami_2	N/A
Pfam	UHGV-0020743_3	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0020743_3	PF05036	N/A	N/A	SPOR domain	SPOR
COG	UHGV-0020743_3	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0020743_3	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0020743_4	1121334.KB911071_gene1966	58.9	0.000000000139	N/A	N/A
PHROG	UHGV-0020743_5	phrog_1863	74.5	7.6e-22	N/A	unknown function
eggNOG-mapper	UHGV-0020743_5	1203606.HMPREF1526_02027	99.8	1.09e-26	N/A	N/A
PHROG	UHGV-0020743_7	phrog_23052	150.8	8.40779e-45	N/A	unknown function
eggNOG-mapper	UHGV-0020743_7	243164.DET1076	144.0	1.4e-33	N/A	N/A
structural_annotation	UHGV-0020743_7	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0020743_8	phrog_1194	57.0	3.3e-16	N/A	unknown function
Pfam	UHGV-0020743_8	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0020743_8	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0020743_9	phrog_1535	140.7	1.10002e-41	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0020743_9	397290.C810_05237	236.0	0	tape measure	N/A
COG	UHGV-0020743_9	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
PHROG	UHGV-0020743_10	phrog_888	133.4	8.20001e-40	N/A	unknown function
UniRef90	UHGV-0020743_10	UniRef90_A0A8J8MQH6	134.0	3.02e-34	N/A	N/A
eggNOG-mapper	UHGV-0020743_10	1151292.QEW_1347	121.0	5.22e-30	Short C-terminal domain	N/A
Pfam	UHGV-0020743_10	PF09851	N/A	N/A	Short C-terminal domain	SHOCT
PHROG	UHGV-0020743_11	phrog_706	110.9	1.1e-32	N/A	unknown function
UniRef90	UHGV-0020743_11	UniRef90_A0A542AIV5	159.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0020743_11	1235790.C805_00084	101.0	1.89e-24	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0020743_11	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0020743_11	PF06854	N/A	N/A	N/A	N/A
UniRef90	UHGV-0020743_12	UniRef90_A0A2Z4QA03	93.2	1.55e-21	Tail assembly chaperone protein	N/A
eggNOG-mapper	UHGV-0020743_12	1120746.CCNL01000014_gene2103	119.0	9.94e-33	N/A	N/A
structural_annotation	UHGV-0020743_12	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0020743_13	phrog_3099	127.8	7.4e-38	N/A	unknown function
eggNOG-mapper	UHGV-0020743_13	645991.Sgly_0346	123.0	1.12e-33	N/A	N/A
structural_annotation	UHGV-0020743_13	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0020743_14	phrog_3266	41.3	0.0000000000066	tail completion	connector
eggNOG-mapper	UHGV-0020743_14	1120746.CCNL01000014_gene2101	51.2	0.00000278	N/A	N/A
structural_annotation	UHGV-0020743_14	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0020743_15	phrog_556	106.1	2.1e-31	minor head protein	head and packaging
UniRef90	UHGV-0020743_15	UniRef90_A0A542AIW0	105.0	5.11e-27	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0020743_15	1120746.CCNL01000014_gene2100	103.0	4.9e-27	Minor capsid protein	N/A
Pfam	UHGV-0020743_15	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
PHROG	UHGV-0020743_16	phrog_3366	69.9	4e-20	N/A	unknown function
structural_annotation	UHGV-0020743_16	PF20536	N/A	N/A	N/A	N/A
PHROG	UHGV-0020743_17	phrog_541	88.4	6.5e-26	head-tail adaptor	connector
eggNOG-mapper	UHGV-0020743_17	663278.Ethha_0095	53.9	0.000000138	N/A	N/A
PHROG	UHGV-0020743_18	phrog_422	330.2	0	major head protein	head and packaging
UniRef90	UHGV-0020743_18	UniRef90_R5H4X0	351.0	0	Lj928 prophage protein	N/A
eggNOG-mapper	UHGV-0020743_18	203119.Cthe_2479	348.0	0	N/A	N/A
structural_annotation	UHGV-0020743_18	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0020743_19	phrog_194	57.1	3.7e-16	head scaffolding protein	head and packaging
UniRef90	UHGV-0020743_19	UniRef90_A0A846KF53	54.7	0.00000776	Viral A-type inclusion protein	N/A
eggNOG-mapper	UHGV-0020743_19	665956.HMPREF1032_03067	68.9	0.00000000000708	Phage minor structural protein GP20	N/A
Pfam	UHGV-0020743_19	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0020743_19	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0020743_21	phrog_130	123.9	1.7e-36	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0020743_21	UniRef90_F8IGN7	122.0	2.04e-31	Prophage antirepressor	N/A
eggNOG-mapper	UHGV-0020743_21	1048834.TC41_2417	122.0	3.41e-32	COG3617 Prophage antirepressor	N/A
Pfam	UHGV-0020743_21	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
COG	UHGV-0020743_21	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0020743_21	PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0020743_23	PF11607,MF_01077,NF037951,COG4568	N/A	N/A	N/A	N/A
PHROG	UHGV-0020743_24	phrog_581	265.2	0	minor head protein	head and packaging
UniRef90	UHGV-0020743_24	UniRef90_A0A1C6GGW2	282.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0020743_24	1292035.H476_1017	261.0	0	N/A	N/A
Pfam	UHGV-0020743_24	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-0020743_24	PF15542	N/A	N/A	Bacterial toxin 50	Ntox50
COG	UHGV-0020743_24	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0020743_24	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0020743_25	phrog_533	239.9	0	portal protein	head and packaging
UniRef90	UHGV-0020743_25	UniRef90_R5H044	400.0	0	Phage portal protein putative A118 family	N/A
eggNOG-mapper	UHGV-0020743_25	883114.HMPREF9709_01198	136.0	1.38e-32	Phage portal protein, SPP1 Gp6-like	N/A
structural_annotation	UHGV-0020743_25	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0020743_26	K06909	121.0	1.4e-35	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0020743_26	phrog_2	136.9	2.29999e-40	terminase large subunit	head and packaging
UniRef90	UHGV-0020743_26	UniRef90_R5LMY1	377.0	0	Phage terminase large subunit PBSX family	N/A
eggNOG-mapper	UHGV-0020743_26	592031.GCWU000322_00074	245.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0020743_26	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0020743_26	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0020743_26	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0020743_26	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0020743_27	1160721.RBI_II00544	60.1	0.00000000287	N/A	N/A
structural_annotation	UHGV-0020743_27	PF07141	N/A	N/A	N/A	N/A
KOfam	UHGV-0020743_28	K05785	54.5	0.0000000000000017	rfaH; transcriptional antiterminator RfaH	N/A
PHROG	UHGV-0020743_28	phrog_6386	60.6	2.3e-17	transcription antiterminator	transcription regulation
UniRef90	UHGV-0020743_28	UniRef90_A0A174ZTH1	127.0	2.78e-34	Transcription termination factor nusG	N/A
eggNOG-mapper	UHGV-0020743_28	485916.Dtox_4226	73.9	0.0000000000000301	antitermination protein NusG	N/A
Pfam	UHGV-0020743_28	PF02357	N/A	N/A	Transcription termination factor nusG	NusG
COG	UHGV-0020743_28	COG0250	N/A	N/A	Transcription termination/antitermination protein NusG	N/A
structural_annotation	UHGV-0020743_28	PF02357,MF_00951,NF033641,COG0250	N/A	N/A	N/A	N/A
PHROG	UHGV-0020743_29	phrog_426	78.9	9e-23	terminase small subunit	head and packaging
UniRef90	UHGV-0020743_29	UniRef90_R5GR06	257.0	0	PF11985 family protein	N/A
eggNOG-mapper	UHGV-0020743_29	1160721.RBI_II00546	152.0	1.26117e-44	N/A	N/A
Pfam	UHGV-0020743_29	PF11985	N/A	N/A	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
structural_annotation	UHGV-0020743_29	PF11985	N/A	N/A	N/A	N/A
PHROG	UHGV-0020743_30	phrog_25462	104.0	8.4e-31	N/A	unknown function
UniRef90	UHGV-0020743_30	UniRef90_A0A349GP70	83.2	1.47e-18	Type VI secretion protein	N/A
eggNOG-mapper	UHGV-0020743_30	1160721.RBI_II00547	100.0	3.79e-26	N/A	N/A
structural_annotation	UHGV-0020743_30	PF01638,MF_01819,NF002926,COG1733	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0020743_31	411473.RUMCAL_01917	64.7	0.00000000000345	N/A	N/A
Pfam	UHGV-0020743_32	PF08765	N/A	N/A	Mor transcription activator family	Mor
COG	UHGV-0020743_32	COG5566	N/A	N/A	Transcriptional regulator, middle operon regulator (Mor) family	N/A
structural_annotation	UHGV-0020743_32	PF08765,NF040785,COG5566	N/A	N/A	N/A	N/A
PHROG	UHGV-0020743_33	phrog_286	40.7	0.000000000046	N/A	unknown function
UniRef90	UHGV-0020743_33	UniRef90_UPI000F51F9E5	75.9	0.0000000000000244	regulatory protein GemA	N/A
eggNOG-mapper	UHGV-0020743_33	665956.HMPREF1032_01635	63.5	0.000000000287	N/A	N/A
Pfam	UHGV-0020743_33	PF06252	N/A	N/A	Bacteriophage Mu, GemA protein	GemA
structural_annotation	UHGV-0020743_33	PF06252	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0020743_34	1160721.RBI_II00551	104.0	6.96e-25	N/A	N/A
AcrCatalog	UHGV-0020743_34	cluster_71843	104.0	2.15e-29	NA	N/A
UniRef90	UHGV-0020743_35	UniRef90_R5GQZ8	105.0	4.78e-28	Putative SpoVT / AbrB like domain protein	N/A
eggNOG-mapper	UHGV-0020743_35	552398.HMPREF0866_03129	63.5	0.00000000000324	SpoVT / AbrB like domain	N/A
COG	UHGV-0020743_35	COG2002	N/A	N/A	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	N/A
structural_annotation	UHGV-0020743_35	PF15937,TIGR01439,NF004424,COG2002	N/A	N/A	N/A	N/A
PHROG	UHGV-0020743_37	phrog_599	43.2	0.0000000000078	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
Pfam	UHGV-0020743_37	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0020743_37	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-0020743_37	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-0020743_37	PF14354,NF007260	N/A	N/A	N/A	N/A
PHROG	UHGV-0020743_38	phrog_5671	107.2	1.1e-31	N/A	unknown function
eggNOG-mapper	UHGV-0020743_38	621372.ACIH01000097_gene2801	108.0	1.34e-28	N/A	N/A
KOfam	UHGV-0020743_39	K02315	142.1	5.29971e-42	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0020743_39	phrog_50	130.6	1.2e-38	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0020743_39	UniRef90_R5H704	313.0	0	AAA domain-containing protein	N/A
eggNOG-mapper	UHGV-0020743_39	1235797.C816_01049	162.0	0	IstB-like ATP binding protein	N/A
Pfam	UHGV-0020743_39	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-0020743_39	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0020743_39	PF01695,MF_01919,NF005992,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-0020743_40	phrog_19658	74.8	1.2e-21	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0020743_40	86416.Clopa_0322	65.1	0.000000000201	DnaD domain protein	N/A
COG	UHGV-0020743_40	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
KOfam	UHGV-0020743_42	K12283	64.1	1.9e-18	mshM; MSHA biogenesis protein MshM	N/A
PHROG	UHGV-0020743_42	phrog_296	125.1	7.1e-37	DNA transposition protein	integration and excision
UniRef90	UHGV-0020743_42	UniRef90_A0A175A3H1	337.0	0	AAA domain-containing protein	N/A
eggNOG-mapper	UHGV-0020743_42	663278.Ethha_0076	156.0	2.08934e-42	AAA domain	N/A
Pfam	UHGV-0020743_42	PF13401	N/A	N/A	AAA domain	AAA_22
COG	UHGV-0020743_42	COG2842	N/A	N/A	Bacteriophage DNA transposition protein, AAA+ family ATPase	N/A
structural_annotation	UHGV-0020743_42	PF13401,MF_01407,TIGR03015,COG2842	N/A	N/A	N/A	N/A
KOfam	UHGV-0020743_43	K07497	46.2	0.00000000000078	K07497; putative transposase	N/A
PHROG	UHGV-0020743_43	phrog_310	304.0	0	transposase	integration and excision
UniRef90	UHGV-0020743_43	UniRef90_R5H7J6	766.0	0	Integrase core domain protein	N/A
eggNOG-mapper	UHGV-0020743_43	1160721.RBI_II00555	546.0	0	Mu transposase, C-terminal	N/A
PADLOC	UHGV-0020743_43	TnsB_0_V-K	58.8	1.3e-17	TnsB_0_V-K	CRISPR-CAS
Pfam	UHGV-0020743_43	PF09299	N/A	N/A	Mu transposase, C-terminal	Mu-transpos_C
COG	UHGV-0020743_43	COG2801	N/A	N/A	Transposase InsO and inactivated derivatives	N/A
structural_annotation	UHGV-0020743_43	PF02914,PF09039,PF09299,PF21531,NF033594,TIGR01764,COG3316,COG3311	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0020743	Yes	29,673	55	78	1
UHGV-0018574	No	26,694	55	71	1
UHGV-0011844	No	25,822	55	69	1