vOTU vOTU-031911

vOTU: vOTU-031911

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-031911
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00984 → vOTU-031911
Host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium → Clostridium paraputrificum
Host range breadth	Species
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0303001
Biosample ID	SAMN07247528
Genome length (bp)	24,174 bps
CheckV completeness	61.20% (Medium-quality)
CDS count	29
CDS density	90.11%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium → Clostridium paraputrificum	Total connections	1	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium → Clostridium paraputrificum	Total connections	31	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 61.2)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0303001_1	K14059	144.8	1.10002e-42	int; integrase	N/A
PHROG	UHGV-0303001_1	phrog_1	130.6	1.7e-38	integrase	integration and excision
UniRef90	UHGV-0303001_1	UniRef90_UPI001AA3283B	271.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0303001_1	641107.CDLVIII_0246	241.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0303001_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0303001_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0303001_1	PF00589,MF_02055,TIGR02249,COG0582	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0303001_2	641107.CDLVIII_1452	128.0	2.63e-35	N/A	N/A
KOfam	UHGV-0303001_3	K01448	111.5	1e-32	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0303001_3	phrog_435	177.4	0	endolysin	lysis
UniRef90	UHGV-0303001_3	UniRef90_UPI0006C0CFD4	544.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0303001_3	1280689.AUJC01000011_gene1538	515.0	0	Cell wall hydrolase autolysin	N/A
Pfam	UHGV-0303001_3	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0303001_3	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0303001_3	PF01520,PF05036,MF_02022,MF_00562,TIGR02883,COG0860,COG3147	N/A	N/A	N/A	N/A
PHROG	UHGV-0303001_4	phrog_199	103.8	1.7e-30	holin	lysis
UniRef90	UHGV-0303001_4	UniRef90_A0A174D4Y4	224.0	0	Toxin secretion/phage lysis holin	N/A
eggNOG-mapper	UHGV-0303001_4	1280689.AUJC01000003_gene982	253.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0303001_4	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0303001_4	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0303001_4	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0303001_4	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0303001_5	phrog_18444	52.9	0.0000000000000054	N/A	unknown function
UniRef90	UHGV-0303001_5	UniRef90_UPI0011788049	67.8	0.000000000000159	peptide chain release factor 2	N/A
eggNOG-mapper	UHGV-0303001_5	1294142.CINTURNW_1043	52.4	0.0000000302	N/A	N/A
PHROG	UHGV-0303001_6	phrog_11785	132.3	4.1e-39	minor head protein	head and packaging
UniRef90	UHGV-0303001_6	UniRef90_U2NPC0	558.0	0	KID repeat-containing protein	N/A
eggNOG-mapper	UHGV-0303001_6	1294142.CINTURNW_1706	558.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0303001_6	PF02018	N/A	N/A	Carbohydrate binding domain	CBM_4_9
COG	UHGV-0303001_6	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0303001_6	PF14594,PF21471,NF033848,NF012201,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0303001_7	phrog_1401	82.6	4.5e-24	N/A	unknown function
UniRef90	UHGV-0303001_7	UniRef90_UPI0018ABCBD1	131.0	5.01e-37	N/A	N/A
eggNOG-mapper	UHGV-0303001_7	1499683.CCFF01000014_gene3897	115.0	1.79e-31	N/A	N/A
structural_annotation	UHGV-0303001_7	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-0303001_8	phrog_1194	120.9	5.7e-36	N/A	unknown function
UniRef90	UHGV-0303001_8	UniRef90_A0A0R1VMM5	95.1	6.08e-23	N/A	N/A
eggNOG-mapper	UHGV-0303001_8	1280692.AUJL01000025_gene2069	112.0	1.29e-30	N/A	N/A
Pfam	UHGV-0303001_8	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0303001_8	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0303001_9	phrog_1535	172.9	0	tail length tape measure protein	tail
UniRef90	UHGV-0303001_9	UniRef90_A0A1I2KTM2	284.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0303001_9	1321778.HMPREF1982_02681	381.0	0	SLT domain	N/A
COG	UHGV-0303001_9	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0303001_10	phrog_8355	131.3	1.5e-39	N/A	unknown function
UniRef90	UHGV-0303001_10	UniRef90_UPI000665A2C9	163.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0303001_10	1280692.AUJL01000027_gene2152	140.0	6.60012e-42	N/A	N/A
Pfam	UHGV-0303001_10	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0303001_10	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0303001_11	phrog_8300	113.1	1.3e-33	N/A	unknown function
eggNOG-mapper	UHGV-0303001_11	1280692.AUJL01000027_gene2153	171.0	0	N/A	N/A
structural_annotation	UHGV-0303001_11	PF06896	N/A	N/A	N/A	N/A
PHROG	UHGV-0303001_12	phrog_820	122.2	3e-36	major tail protein	tail
eggNOG-mapper	UHGV-0303001_12	1280692.AUJL01000027_gene2154	239.0	0	domain, Protein	N/A
COG	UHGV-0303001_12	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0303001_12	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0303001_13	phrog_2595	85.7	4.8e-25	head-tail connector protein	connector
UniRef90	UHGV-0303001_13	UniRef90_UPI000C08D995	223.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0303001_13	1280692.AUJL01000027_gene2155	206.0	0	N/A	N/A
Pfam	UHGV-0303001_13	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0303001_13	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0303001_14	phrog_556	65.8	6.4e-19	minor head protein	head and packaging
UniRef90	UHGV-0303001_14	UniRef90_UPI000C085B44	251.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0303001_14	1280692.AUJL01000027_gene2156	204.0	0	Minor capsid protein	N/A
Pfam	UHGV-0303001_14	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
PHROG	UHGV-0303001_15	phrog_8710	106.7	1.4e-31	N/A	unknown function
UniRef90	UHGV-0303001_15	UniRef90_UPI0018A9BDCF	151.0	1.4013e-45	ParB/RepB/Spo0J family partition protein	N/A
eggNOG-mapper	UHGV-0303001_15	1294142.CINTURNW_1032	129.0	1.55e-37	N/A	N/A
structural_annotation	UHGV-0303001_15	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0303001_16	phrog_541	95.5	4.5e-28	head-tail adaptor	connector
eggNOG-mapper	UHGV-0303001_16	1280692.AUJL01000027_gene2158	209.0	0	N/A	N/A
PHROG	UHGV-0303001_17	phrog_1378	85.5	4.3e-25	N/A	unknown function
eggNOG-mapper	UHGV-0303001_17	1280692.AUJL01000027_gene2159	123.0	4.91e-36	N/A	N/A
PHROG	UHGV-0303001_18	phrog_422	346.6	0	major head protein	head and packaging
UniRef90	UHGV-0303001_18	UniRef90_UPI000C06A988	601.0	0	capsid protein	N/A
eggNOG-mapper	UHGV-0303001_18	1280692.AUJL01000027_gene2160	520.0	0	N/A	N/A
structural_annotation	UHGV-0303001_18	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0303001_19	phrog_2303	143.4	1.19951e-42	head scaffolding protein	head and packaging
UniRef90	UHGV-0303001_19	UniRef90_A0A0N7BTJ7	183.0	0	N/A	N/A
eggNOG-mapper	UHGV-0303001_19	1391647.AVSV01000003_gene1807	222.0	0	N/A	N/A
structural_annotation	UHGV-0303001_19	PF10788	N/A	N/A	N/A	N/A
PHROG	UHGV-0303001_20	phrog_918	123.6	5.4e-37	N/A	unknown function
UniRef90	UHGV-0303001_20	UniRef90_UPI0005DA7338	172.0	0	N/A	N/A
eggNOG-mapper	UHGV-0303001_20	1499683.CCFF01000014_gene3910	180.0	0	N/A	N/A
Pfam	UHGV-0303001_20	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0303001_20	PF19791	N/A	N/A	N/A	N/A
PHROG	UHGV-0303001_21	phrog_872	53.6	0.000000000000005	N/A	unknown function
UniRef90	UHGV-0303001_21	UniRef90_A0A350S1T8	93.2	1.17e-23	N/A	N/A
eggNOG-mapper	UHGV-0303001_21	1280692.AUJL01000027_gene2162	90.9	1.61e-23	N/A	N/A
Pfam	UHGV-0303001_21	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0303001_21	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
PHROG	UHGV-0303001_23	phrog_1865	67.3	1.8e-19	N/A	unknown function
structural_annotation	UHGV-0303001_23	PF07073,MF_01077,NF037951,COG4568	N/A	N/A	N/A	N/A
PHROG	UHGV-0303001_24	phrog_581	333.4	0	minor head protein	head and packaging
UniRef90	UHGV-0303001_24	UniRef90_UPI001896AD6F	1095.0	0	polymorphic toxin type 50 domain-containing protein	N/A
eggNOG-mapper	UHGV-0303001_24	1391647.AVSV01000003_gene1804	713.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0303001_24	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-0303001_24	PF15542	N/A	N/A	Bacterial toxin 50	Ntox50
COG	UHGV-0303001_24	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0303001_24	PF06152,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-0303001_25	phrog_533	285.2	0	portal protein	head and packaging
UniRef90	UHGV-0303001_25	UniRef90_UPI001898ADC2	942.0	0	capsid protein	N/A
eggNOG-mapper	UHGV-0303001_25	1280692.AUJL01000027_gene2165	784.0	0	N/A	N/A
structural_annotation	UHGV-0303001_25	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0303001_26	K06909	117.0	2.3e-34	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0303001_26	phrog_10250	67.0	1.6e-19	N/A	unknown function
UniRef90	UHGV-0303001_26	UniRef90_UPI001898DC74	864.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0303001_26	1280692.AUJL01000027_gene2166	816.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0303001_26	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0303001_26	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0303001_26	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0303001_27	phrog_59	126.3	1.6e-37	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0303001_27	UniRef90_A0A6L9EPW1	310.0	0	HNHc domain-containing protein	N/A
eggNOG-mapper	UHGV-0303001_27	881953.E0YIS7_9CAUD	127.0	6.31e-35	HNH endonuclease	N/A
PADLOC	UHGV-0303001_27	HEase_00016	88.2	1.7e-25	homing endonuclease	RM
Pfam	UHGV-0303001_27	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
Pfam	UHGV-0303001_27	PF13392	N/A	N/A	HNH endonuclease	HNH_3
Pfam	UHGV-0303001_27	PF07453	N/A	N/A	NUMOD1 domain	NUMOD1
structural_annotation	UHGV-0303001_27	PF07463,PF07453,TIGR01453	N/A	N/A	N/A	N/A
KOfam	UHGV-0303001_28	K07474	159.3	0	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0303001_28	phrog_51	156.9	0	terminase small subunit	head and packaging
UniRef90	UHGV-0303001_28	UniRef90_UPI0011CAB70D	320.0	0	terminase small subunit	N/A
eggNOG-mapper	UHGV-0303001_28	1294142.CINTURNW_1022	241.0	0	Terminase Small Subunit	N/A
Pfam	UHGV-0303001_28	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0303001_28	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0303001_28	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0303001_29	K00558	180.0	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0303001_29	phrog_116	213.1	0	DNA methyltransferase	other
UniRef90	UHGV-0303001_29	UniRef90_A0A1M6EYK1	538.0	0	Cytosine-specific methyltransferase	N/A
eggNOG-mapper	UHGV-0303001_29	1391647.AVSV01000003_gene1798	535.0	0	PFAM C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0303001_29	MTase_II_00058	200.5	0	Type II methyltransferase	RM
Pfam	UHGV-0303001_29	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0303001_29	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0303001_29	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0303001_29	PF00145,MF_00786,TIGR00675,COG0270	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0303001	Yes	24,174	31	61	1
UHGV-0074478	No	18,547	32	47	1
UHGV-1767293	No	18,547	32	47	1