vOTU vOTU-032047

vOTU: vOTU-032047

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-032047
Number of genomes	3
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae
Taxonomy (UHGV)	vFAM-00007 → vSUBFAM-00048 → vGENUS-00024 → vOTU-032047
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Agathobacter → Agathobacter rectalis
Host range breadth	Species
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0317749
Biosample ID	N/A
Genome length (bp)	34,432 bps
CheckV completeness	58.42% (Medium-quality)
CDS count	54
CDS density	92.03%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Agathobacter → Agathobacter rectalis	Total connections	2880	Host agreement	84.97
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae	Total connections	2	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 58.42)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0317749_1	phrog_28328	42.6	0.0000000000078	N/A	unknown function
PHROG	UHGV-0317749_4	phrog_872	100.4	1.9e-29	N/A	unknown function
UniRef90	UHGV-0317749_4	UniRef90_UPI001EE041E7	128.0	5.84e-37	N/A	N/A
eggNOG-mapper	UHGV-0317749_4	688245.CtCNB1_2652	102.0	1.11e-26	N/A	N/A
Pfam	UHGV-0317749_4	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0317749_4	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0317749_4	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-0317749_8	phrog_38	144.2	9.40271e-43	terminase large subunit	head and packaging
UniRef90	UHGV-0317749_8	UniRef90_A0A4Q5C857	1001.0	0	Terminase_6C domain-containing protein	N/A
eggNOG-mapper	UHGV-0317749_8	397290.C810_01390	667.0	0	chromosome segregation	N/A
COG	UHGV-0317749_8	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0317749_8	PF17289,PF03237,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-0317749_9	phrog_9529	76.6	3.1e-22	N/A	unknown function
UniRef90	UHGV-0317749_9	UniRef90_UPI000836A084	85.1	4.35e-17	N/A	N/A
eggNOG-mapper	UHGV-0317749_9	202752.JL53_03720	60.1	0.0000000295	N/A	N/A
Pfam	UHGV-0317749_9	PF04480	N/A	N/A	N/A	DUF559
COG	UHGV-0317749_9	COG2852	N/A	N/A	Very-short-patch-repair endonuclease	N/A
PHROG	UHGV-0317749_10	phrog_36	72.7	6.1e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-0317749_10	UniRef90_A0A6N7XL46	82.4	3.55e-17	Sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-0317749_10	1123288.SOV_6c01520	77.4	3.8e-16	sigma factor activity	N/A
Pfam	UHGV-0317749_10	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-0317749_10	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0317749_10	PF07374,MF_00674,NF008895,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-0317749_11	phrog_64	150.0	1.26117e-44	portal protein	head and packaging
UniRef90	UHGV-0317749_11	UniRef90_A0A412RQZ0	992.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0317749_11	1232453.BAIF02000058_gene1625	341.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0317749_11	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0317749_11	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0317749_12	phrog_2662	56.1	4.1e-16	portal protein	head and packaging
UniRef90	UHGV-0317749_12	UniRef90_A0A412RR50	390.0	0	Phage_Mu_F domain-containing protein	N/A
Pfam	UHGV-0317749_12	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0317749_12	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0317749_12	PF04233,TIGR01641	N/A	N/A	N/A	N/A
UniRef90	UHGV-0317749_13	UniRef90_R6C0B6	93.6	1.31e-20	Phage capsid scaffolding protein	N/A
PHROG	UHGV-0317749_14	phrog_909	49.4	0.000000000000077	major head protein	head and packaging
eggNOG-mapper	UHGV-0317749_14	1298920.KI911353_gene2661	120.0	6.56e-34	N/A	N/A
PHROG	UHGV-0317749_15	phrog_29	161.4	0	major head protein	head and packaging
UniRef90	UHGV-0317749_15	UniRef90_UPI001D02C54B	682.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-0317749_15	1298920.KI911353_gene2660	350.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0317749_15	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0317749_15	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0317749_16	UniRef90_A0A416G2T8	50.1	0.00000303	Rho_N domain-containing protein	N/A
structural_annotation	UHGV-0317749_16	PF21169	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0317749_17	397290.C810_01402	63.2	0.000000000047	N/A	N/A
PHROG	UHGV-0317749_18	phrog_4105	75.8	1e-23	N/A	unknown function
eggNOG-mapper	UHGV-0317749_18	411459.RUMOBE_00911	141.0	2.62043e-42	N/A	N/A
PHROG	UHGV-0317749_19	phrog_1129	73.4	2.1e-21	holin	lysis
UniRef90	UHGV-0317749_19	UniRef90_A0A412RR82	162.0	0	Enolase	N/A
eggNOG-mapper	UHGV-0317749_19	411461.DORFOR_00721	90.5	9.85e-23	N/A	N/A
Pfam	UHGV-0317749_19	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0317749_19	PF06946	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0317749_20	1298920.KI911353_gene2656	61.6	0.000000000398	N/A	N/A
structural_annotation	UHGV-0317749_20	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0317749_21	1232453.BAIF02000058_gene1631	119.0	1.43e-31	N/A	N/A
AcrCatalog	UHGV-0317749_21	cluster_24841	151.0	0	NA	N/A
structural_annotation	UHGV-0317749_22	PF05657	N/A	N/A	N/A	N/A
UniRef90	UHGV-0317749_23	UniRef90_R7BGF5	90.1	8.83e-20	Phage tail protein	N/A
structural_annotation	UHGV-0317749_23	PF16463,TIGR02126,COG5437	N/A	N/A	N/A	N/A
KOfam	UHGV-0317749_26	K07273	157.9	0	acm; lysozyme	N/A
PHROG	UHGV-0317749_26	phrog_291	133.3	2.3e-39	endolysin	lysis
UniRef90	UHGV-0317749_26	UniRef90_A0A174GRH8	567.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-0317749_26	1235800.C819_00458	232.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0317749_26	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0317749_26	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0317749_26	PF01183,PF01471,MF_01672,COG3757,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0317749_27	phrog_1535	65.9	5.8e-20	tail length tape measure protein	tail
UniRef90	UHGV-0317749_27	UniRef90_A0A173UI54	246.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0317749_27	1408437.JNJN01000010_gene1238	154.0	6.59e-39	domain protein	N/A
COG	UHGV-0317749_27	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0317749_28	phrog_314	87.1	1.9e-25	homing endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0317749_28	UniRef90_A0A173UI60	404.0	0	Group I intron endonuclease	N/A
eggNOG-mapper	UHGV-0317749_28	1380384.JADN01000003_gene632	93.6	5.04e-20	Intron encoded nuclease repeat motif	N/A
Pfam	UHGV-0317749_28	PF01541	N/A	N/A	GIY-YIG catalytic domain	GIY-YIG
Pfam	UHGV-0317749_28	PF07453	N/A	N/A	NUMOD1 domain	NUMOD1
NCBIFam	UHGV-0317749_28	TIGR01453.1	N/A	N/A	group I intron endonuclease	N/A
structural_annotation	UHGV-0317749_28	PF07453,PF19835,PF04936,TIGR01453	N/A	N/A	N/A	N/A
PHROG	UHGV-0317749_29	phrog_1535	153.6	0	tail length tape measure protein	tail
UniRef90	UHGV-0317749_29	UniRef90_A0A173UHS1	361.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0317749_29	397290.C810_01419	136.0	1.29e-29	Transglycosylase SLT domain	N/A
COG	UHGV-0317749_29	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
PHROG	UHGV-0317749_30	phrog_1194	117.7	5.5e-35	N/A	unknown function
eggNOG-mapper	UHGV-0317749_30	997830.HMPREF1124_0608	84.0	2.39e-19	N/A	N/A
Pfam	UHGV-0317749_30	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0317749_30	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0317749_31	phrog_6616	508.6	0	tail protein	tail
UniRef90	UHGV-0317749_31	UniRef90_A0A412RR71	1414.0	0	Tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-0317749_31	476272.RUMHYD_01992	368.0	0	N/A	N/A
Pfam	UHGV-0317749_31	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
structural_annotation	UHGV-0317749_31	PF05113,PF20010,NF033848,COG3500	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0317749_32	476272.RUMHYD_01994	67.0	0.000000000097	N/A	N/A
Pfam	UHGV-0317749_32	PF11839	N/A	N/A	Alanine-zipper, major outer membrane lipoprotein	Alanine_zipper
PHROG	UHGV-0317749_33	phrog_5302	298.6	0	tail protein	tail
UniRef90	UHGV-0317749_33	UniRef90_A0A345BPB9	258.0	0	Lectin	N/A
eggNOG-mapper	UHGV-0317749_33	428125.CLOLEP_01426	305.0	0	N/A	N/A
structural_annotation	UHGV-0317749_33	COG1262	N/A	N/A	N/A	N/A
PHROG	UHGV-0317749_34	phrog_20201	52.0	0.000000000000015	N/A	unknown function
PHROG	UHGV-0317749_36	phrog_3845	47.2	0.00000000000041	N/A	unknown function
eggNOG-mapper	UHGV-0317749_36	1262449.CP6013_3208	48.1	0.00000756	N/A	N/A
KOfam	UHGV-0317749_37	K22300	53.3	0.0000000000000062	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0317749_37	phrog_8	51.3	0.000000000000026	transcriptional regulator	transcription regulation
UniRef90	UHGV-0317749_37	UniRef90_A0A412RR31	117.0	6.8e-32	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0317749_37	1232449.BAHV02000016_gene1846	62.4	0.000000000363	Peptidase S24-like	N/A
Pfam	UHGV-0317749_37	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0317749_37	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0317749_37	PF12844,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0317749_38	phrog_8	52.3	0.000000000000013	transcriptional regulator	transcription regulation
UniRef90	UHGV-0317749_38	UniRef90_UPI001C012A29	80.5	2.57e-18	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0317749_38	1304866.K413DRAFT_0834	62.8	0.0000000000135	PFAM helix-turn-helix domain protein	N/A
Pfam	UHGV-0317749_38	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0317749_38	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
COG	UHGV-0317749_40	COG0386	N/A	N/A	Thioredoxin/glutathione peroxidase BtuE, reduces lipid peroxides	N/A
PHROG	UHGV-0317749_41	phrog_463	129.8	2.1e-38	anti-repressor	transcription regulation
UniRef90	UHGV-0317749_41	UniRef90_UPI00189C937A	117.0	2.4e-31	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-0317749_41	1449343.JQLQ01000002_gene1556	130.0	7.09e-36	BRO family, N-terminal domain	N/A
Pfam	UHGV-0317749_41	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
COG	UHGV-0317749_41	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0317749_41	PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
PHROG	UHGV-0317749_42	phrog_463	84.3	1.8e-24	anti-repressor	transcription regulation
UniRef90	UHGV-0317749_42	UniRef90_A0A412RQX1	266.0	0	Phage repressor protein	N/A
eggNOG-mapper	UHGV-0317749_42	1304866.K413DRAFT_3008	118.0	3.27e-31	Phage regulatory protein	N/A
Pfam	UHGV-0317749_42	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-0317749_42	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-0317749_42	PF10552	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0317749_44	742765.HMPREF9457_03017	98.6	2.49e-22	peptidase	N/A
COG	UHGV-0317749_44	COG4942	N/A	N/A	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB	N/A
KOfam	UHGV-0317749_46	K19171	80.4	1.8e-23	dndD; DNA sulfur modification protein DndD	N/A
PHROG	UHGV-0317749_46	phrog_77	146.4	2.00386e-43	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0317749_46	UniRef90_A0A412RQV0	900.0	0	AAA_23 domain-containing protein	N/A
eggNOG-mapper	UHGV-0317749_46	397290.C810_01461	382.0	0	nuclear chromosome segregation	N/A
COG	UHGV-0317749_46	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0317749_46	PF02463,MF_00449,NF041034,COG0419	N/A	N/A	N/A	N/A
PHROG	UHGV-0317749_48	phrog_2164	58.3	7.7e-17	N/A	unknown function
PHROG	UHGV-0317749_51	phrog_10056	180.0	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0317749_51	UniRef90_A0A412RR22	476.0	0	Phage recombination protein Bet	N/A
eggNOG-mapper	UHGV-0317749_51	397290.C810_01467	320.0	0	Phage recombination protein Bet	N/A
Pfam	UHGV-0317749_51	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0317749_51	TIGR01913.1	N/A	N/A	phage recombination protein Bet	N/A
COG	UHGV-0317749_51	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0317749_51	PF03837,TIGR01913,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0317749_52	phrog_25456	42.0	2.7e-16	N/A	unknown function
PHROG	UHGV-0317749_53	phrog_757	212.6	0	DNA methyltransferase	other
UniRef90	UHGV-0317749_53	UniRef90_UPI0006A41431	360.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0317749_53	1327985.S0A061_9CAUD	267.0	0	N/A	N/A
structural_annotation	UHGV-0317749_53	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0317749_54	phrog_392	79.9	4.9e-23	metal-dependent hydrolase	other
UniRef90	UHGV-0317749_54	UniRef90_A0A416JIG7	114.0	8e-32	MBL fold metallo-hydrolase	N/A
eggNOG-mapper	UHGV-0317749_54	1122985.HMPREF1991_02241	100.0	2.54e-25	N/A	N/A
Pfam	UHGV-0317749_54	PF00753	N/A	N/A	Metallo-beta-lactamase superfamily	Lactamase_B
dbAPIS	UHGV-0317749_54	APIS058	N/A	N/A	N/A	N/A
COG	UHGV-0317749_54	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0317749	Yes	34,432	39	58	1
UHGV-0126645	No	31,626	39	54	1
UHGV-1381791	No	30,928	39	52	1