vOTU vOTU-032417

vOTU: vOTU-032417

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-032417
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-01144 → vOTU-032417
Host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium → Clostridium saudiense
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0049661
Biosample ID	N/A
Genome length (bp)	33,288 bps
CheckV completeness	89.07% (Medium-quality)
CDS count	53
CDS density	91.46%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage		Total connections		Host agreement
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium → Clostridium saudiense	Total connections	2	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 89.07)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0049661_1	phrog_16267	212.4	0	N/A	unknown function
UniRef90	UHGV-0049661_1	UniRef90_UPI0006DC2AEE	491.0	0	tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-0049661_1	1499683.CCFF01000014_gene3896	546.0	0	Phage minor structural protein	N/A
COG	UHGV-0049661_1	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0049661_1	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0049661_2	phrog_1401	99.7	2.3e-29	N/A	unknown function
UniRef90	UHGV-0049661_2	UniRef90_UPI0018A98488	190.0	0	N/A	N/A
eggNOG-mapper	UHGV-0049661_2	1294142.CINTURNW_1705	132.0	5.91e-38	N/A	N/A
structural_annotation	UHGV-0049661_2	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-0049661_3	phrog_2566	96.1	2e-28	N/A	unknown function
eggNOG-mapper	UHGV-0049661_3	1294142.CINTURNW_1040	90.1	1.2e-22	N/A	N/A
PHROG	UHGV-0049661_4	phrog_1194	133.9	5.4e-40	N/A	unknown function
eggNOG-mapper	UHGV-0049661_4	1499683.CCFF01000014_gene3899	179.0	0	N/A	N/A
Pfam	UHGV-0049661_4	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0049661_4	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0049661_5	phrog_1535	278.4	0	tail length tape measure protein	tail
UniRef90	UHGV-0049661_5	UniRef90_A0A1C6GVH2	1276.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0049661_5	33035.JPJF01000093_gene2243	466.0	0	phage tail tape measure protein	N/A
COG	UHGV-0049661_5	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0049661_5	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0049661_6	phrog_8355	108.0	3e-32	N/A	unknown function
UniRef90	UHGV-0049661_6	UniRef90_A0A1C6K7X9	150.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0049661_6	483218.BACPEC_01147	80.5	4.61e-19	Bacteriophage Gp15 protein	N/A
PHROG	UHGV-0049661_7	phrog_8300	109.7	1.5e-32	N/A	unknown function
eggNOG-mapper	UHGV-0049661_7	1151292.QEW_2425	117.0	6.79e-33	N/A	N/A
structural_annotation	UHGV-0049661_7	PF06896	N/A	N/A	N/A	N/A
PHROG	UHGV-0049661_8	phrog_820	140.7	6.00036e-42	major tail protein	tail
eggNOG-mapper	UHGV-0049661_8	1507.HMPREF0262_01184	186.0	0	domain, Protein	N/A
COG	UHGV-0049661_8	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0049661_8	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0049661_9	phrog_2595	88.1	7.9e-26	head-tail connector protein	connector
UniRef90	UHGV-0049661_9	UniRef90_UPI001D0627B3	124.0	3.56e-34	minor capsid protein	N/A
eggNOG-mapper	UHGV-0049661_9	1282664.H354_06686	161.0	0	N/A	N/A
Pfam	UHGV-0049661_9	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0049661_9	PF12691,COG5003	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0049661_10	33035.JPJF01000093_gene2248	186.0	0	N/A	N/A
structural_annotation	UHGV-0049661_10	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0049661_11	phrog_8710	151.5	1.4013e-45	N/A	unknown function
eggNOG-mapper	UHGV-0049661_11	483218.BACPEC_01152	131.0	2.6e-38	N/A	N/A
structural_annotation	UHGV-0049661_11	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0049661_12	phrog_541	87.3	1.4e-25	head-tail adaptor	connector
eggNOG-mapper	UHGV-0049661_12	483218.BACPEC_01153	143.0	1.88054e-42	N/A	N/A
PHROG	UHGV-0049661_13	phrog_1378	85.1	5.4e-25	N/A	unknown function
eggNOG-mapper	UHGV-0049661_13	1280692.AUJL01000027_gene2159	104.0	3e-28	N/A	N/A
PHROG	UHGV-0049661_14	phrog_422	353.1	0	major head protein	head and packaging
UniRef90	UHGV-0049661_14	UniRef90_UPI000C06A988	543.0	0	capsid protein	N/A
eggNOG-mapper	UHGV-0049661_14	1305708.M9Q2F4_9CAUD	523.0	0	N/A	N/A
structural_annotation	UHGV-0049661_14	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0049661_15	phrog_2303	139.1	2.59997e-41	head scaffolding protein	head and packaging
UniRef90	UHGV-0049661_15	UniRef90_A0A0N7BTJ7	157.0	4.2039e-45	N/A	N/A
eggNOG-mapper	UHGV-0049661_15	1280692.AUJL01000027_gene2161	189.0	0	N/A	N/A
structural_annotation	UHGV-0049661_15	PF10788	N/A	N/A	N/A	N/A
PHROG	UHGV-0049661_16	phrog_774	60.5	3.1e-17	N/A	unknown function
eggNOG-mapper	UHGV-0049661_16	397290.C810_05225	78.6	8.78e-17	N/A	N/A
PHROG	UHGV-0049661_18	phrog_581	258.2	0	minor head protein	head and packaging
UniRef90	UHGV-0049661_18	UniRef90_A0A1C6GWM1	638.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0049661_18	742740.HMPREF9474_03503	356.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0049661_18	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0049661_18	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0049661_18	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0049661_19	phrog_25639	77.0	1.6e-22	N/A	unknown function
eggNOG-mapper	UHGV-0049661_19	1282664.H354_06631	63.9	0.000000000000945	N/A	N/A
PHROG	UHGV-0049661_20	phrog_533	276.4	0	portal protein	head and packaging
UniRef90	UHGV-0049661_20	UniRef90_A0A1C6GX09	983.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0049661_20	742740.HMPREF9474_03501	518.0	0	N/A	N/A
structural_annotation	UHGV-0049661_20	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0049661_21	K06909	106.9	2.7e-31	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0049661_21	phrog_10250	54.9	1.5e-16	N/A	unknown function
UniRef90	UHGV-0049661_21	UniRef90_A0A1C6GX29	934.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-0049661_21	1305708.M9Q2I1_9CAUD	677.0	0	DNA packaging	N/A
Pfam	UHGV-0049661_21	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
structural_annotation	UHGV-0049661_21	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0049661_22	phrog_509	242.5	0	terminase small subunit	head and packaging
UniRef90	UHGV-0049661_22	UniRef90_B1BWD0	219.0	0	N/A	N/A
eggNOG-mapper	UHGV-0049661_22	1305708.M9Q2K7_9CAUD	223.0	0	N/A	N/A
Pfam	UHGV-0049661_22	PF10668	N/A	N/A	Phage terminase small subunit	Phage_terminase
NCBIFam	UHGV-0049661_22	NF040601.1	N/A	N/A	phage terminase small subunit	N/A
structural_annotation	UHGV-0049661_22	NF040601,COG5484	N/A	N/A	N/A	N/A
KOfam	UHGV-0049661_23	K04763	92.2	7.6e-27	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0049661_23	phrog_216	104.6	5.3e-31	integrase	integration and excision
UniRef90	UHGV-0049661_23	UniRef90_A0A1C6GWQ2	523.0	0	Site-specific tyrosine recombinase XerC	N/A
eggNOG-mapper	UHGV-0049661_23	457396.CSBG_01042	182.0	0	Phage integrase family	N/A
Pfam	UHGV-0049661_23	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0049661_23	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0049661_23	PF00589,MF_01807,NF040815,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0049661_26	phrog_9628	106.3	1.9e-31	N/A	unknown function
UniRef90	UHGV-0049661_26	UniRef90_A0A399IIK1	103.0	1.78e-25	DNA-binding response regulator	N/A
eggNOG-mapper	UHGV-0049661_26	536233.CLO_0876	93.2	3.56e-22	N/A	N/A
Pfam	UHGV-0049661_26	PF13936	N/A	N/A	Helix-turn-helix domain	HTH_38
KOfam	UHGV-0049661_28	K06899	43.8	0.000000000000013	ndpA; nucleoid-associated protein	N/A
PHROG	UHGV-0049661_28	phrog_1974	360.3	0	N/A	unknown function
UniRef90	UHGV-0049661_28	UniRef90_A0A1C6GXA5	714.0	0	Nucleoid-associated protein NdpA	N/A
eggNOG-mapper	UHGV-0049661_28	1414720.CBYM010000002_gene581	491.0	0	37-kD nucleoid-associated bacterial protein	N/A
Pfam	UHGV-0049661_28	PF04245	N/A	N/A	37-kD nucleoid-associated bacterial protein	NA37
COG	UHGV-0049661_28	COG3081	N/A	N/A	dsDNA-binding nucleoid-associated protein YejK/NdpA	N/A
structural_annotation	UHGV-0049661_28	PF04245,MF_00730,NF001557,COG3081	N/A	N/A	N/A	N/A
PHROG	UHGV-0049661_29	phrog_986	94.2	1.2e-27	RNA-binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0049661_29	UniRef90_UPI00058CBF35	146.0	2.66247e-44	N/A	N/A
eggNOG-mapper	UHGV-0049661_29	1582152.A0A0A8WI22_9CAUD	70.9	0.0000000000000146	N/A	N/A
Pfam	UHGV-0049661_29	PF12961	N/A	N/A	N/A	DUF3850
KOfam	UHGV-0049661_30	K00558	179.0	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0049661_30	phrog_116	198.6	0	DNA methyltransferase	other
UniRef90	UHGV-0049661_30	UniRef90_A0A1C6GXI4	630.0	0	Cytosine-specific methyltransferase	N/A
eggNOG-mapper	UHGV-0049661_30	1211817.CCAT010000049_gene2479	533.0	0	PFAM C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0049661_30	MTase_II_00058	171.3	0	Type II methyltransferase	RM
Pfam	UHGV-0049661_30	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0049661_30	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0049661_30	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0049661_30	PF00145,TIGR00675,COG0270	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0049661_38	PF11148,MF_01553,COG5503	N/A	N/A	N/A	N/A
KOfam	UHGV-0049661_40	K02315	140.7	1.40004e-41	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0049661_40	phrog_50	145.9	3.29305e-43	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0049661_40	UniRef90_A0A1C6GY63	478.0	0	DNA replication protein dnaC	N/A
eggNOG-mapper	UHGV-0049661_40	1414720.CBYM010000001_gene676	420.0	0	PFAM IstB-like ATP binding protein	N/A
Pfam	UHGV-0049661_40	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-0049661_40	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0049661_40	PF01695,MF_01919,NF005378,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-0049661_41	phrog_428	185.1	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0049661_41	UniRef90_A0A1C6GYM3	479.0	0	Conserved phage C-terminus (Phg_2220_C)	N/A
eggNOG-mapper	UHGV-0049661_41	1220551.SCHR_00760	187.0	0	Conserved phage C-terminus (Phg_2220_C)	N/A
Pfam	UHGV-0049661_41	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
Pfam	UHGV-0049661_41	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-0049661_41	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
COG	UHGV-0049661_41	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0049661_41	PF13730,NF040939,COG3355	N/A	N/A	N/A	N/A
UniRef90	UHGV-0049661_44	UniRef90_A0A1C6JI65	74.3	6.89e-17	Spo0E like sporulation regulatory protein	N/A
Pfam	UHGV-0049661_44	PF09388	N/A	N/A	Spo0E like sporulation regulatory protein	SpoOE-like
structural_annotation	UHGV-0049661_44	PF09388	N/A	N/A	N/A	N/A
PHROG	UHGV-0049661_45	phrog_12396	41.8	0.000000000018	N/A	unknown function
eggNOG-mapper	UHGV-0049661_45	1305836.AXVE01000008_gene1194	99.0	2.86e-23	N/A	N/A
UniRef90	UHGV-0049661_46	UniRef90_UPI000C0827A1	77.4	3.35e-16	TFIIB-type zinc ribbon-containing protein	N/A
PHROG	UHGV-0049661_47	phrog_463	156.6	0	anti-repressor	transcription regulation
UniRef90	UHGV-0049661_47	UniRef90_A0A1C6GYV7	538.0	0	ORF6C domain	N/A
eggNOG-mapper	UHGV-0049661_47	999411.HMPREF1092_00883	263.0	0	ORF6N domain	N/A
Pfam	UHGV-0049661_47	PF10543	N/A	N/A	ORF6N domain	ORF6N
Pfam	UHGV-0049661_47	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-0049661_47	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-0049661_47	PF10552,PF09669,TIGR02681,COG3646	N/A	N/A	N/A	N/A
UniRef90	UHGV-0049661_50	UniRef90_A0A1C6GYX6	136.0	1.05001e-40	Predicted transcriptional regulator	N/A
Pfam	UHGV-0049661_50	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0049661_50	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
KOfam	UHGV-0049661_51	K22299	42.6	0.000000000013	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0049661_51	phrog_8	47.4	0.00000000000044	transcriptional regulator	transcription regulation
UniRef90	UHGV-0049661_51	UniRef90_A0A1C6GYX5	235.0	0	Helix-turn-helix	N/A
eggNOG-mapper	UHGV-0049661_51	573061.Clocel_2358	172.0	0	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0049661_51	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0049661_51	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0049661_52	K06400	297.1	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0049661_52	phrog_95	336.1	0	integrase	integration and excision
UniRef90	UHGV-0049661_52	UniRef90_A0A1C6GYL6	957.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-0049661_52	1321778.HMPREF1982_03926	585.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0049661_52	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0049661_52	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0049661_52	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0049661_52	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0049661_52	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-0049661_53	K03091	151.4	8.40779e-45	sigH; RNA polymerase sporulation-specific sigma factor	N/A
PHROG	UHGV-0049661_53	phrog_351	79.0	6.1e-23	RNA polymerase sigma factor	transcription regulation
UniRef90	UHGV-0049661_53	UniRef90_A0A174BZP7	283.0	0	RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-0049661_53	545697.HMPREF0216_01850	268.0	0	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released	N/A
PADLOC	UHGV-0049661_53	MzaA_00001	45.7	0.00000000000087	NA	mzaABCDE
Pfam	UHGV-0049661_53	PF04542	N/A	N/A	Sigma-70 region 2	Sigma70_r2
NCBIFam	UHGV-0049661_53	TIGR02937.1	N/A	N/A	sigma-70 family RNA polymerase sigma factor	N/A
COG	UHGV-0049661_53	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0049661	Yes	33,288	29	89	1
UHGV-0356324	No	22,200	29	58	1