vOTU vOTU-032589

vOTU: vOTU-032589

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-032589
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Taxonomy (UHGV)	vFAM-00001 → vSUBFAM-01113 → vGENUS-02521 → vOTU-032589
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Host range breadth	Species
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0375519
Biosample ID	N/A
Genome length (bp)	32,389 bps
CheckV completeness	78.04% (Medium-quality)
CDS count	45
CDS density	93.39%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	358	Host agreement	71.51
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	276	Host agreement	93.84

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 78.04)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0375519_1	UniRef90_R5BE64	48.1	0.00000298	Site-specific tyrosine recombinase XerC	N/A
eggNOG-mapper	UHGV-0375519_1	658659.HMPREF0983_02870	65.1	0.00000000000614	Phage integrase family	N/A
COG	UHGV-0375519_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
PHROG	UHGV-0375519_2	phrog_5978	124.6	8.3e-37	N/A	unknown function
UniRef90	UHGV-0375519_2	UniRef90_A0A2N0UXR1	800.0	0	Adenosine monophosphate-protein transferase SoFic	N/A
eggNOG-mapper	UHGV-0375519_2	936375.HMPREF1152_1541	357.0	0	Filamentation induced by cAMP protein fic	N/A
Pfam	UHGV-0375519_2	PF02661	N/A	N/A	Fic/DOC family	Fic
Pfam	UHGV-0375519_2	PF13412	N/A	N/A	Winged helix-turn-helix DNA-binding	HTH_24
COG	UHGV-0375519_2	COG3177	N/A	N/A	Fic family protein	N/A
structural_annotation	UHGV-0375519_2	PF07183,MF_01911,NF040876,COG3177	N/A	N/A	N/A	N/A
KOfam	UHGV-0375519_3	K01356	108.4	1.1e-31	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0375519_3	phrog_4	137.9	9.10003e-41	transcriptional repressor	transcription regulation
UniRef90	UHGV-0375519_3	UniRef90_UPI0015F84BF4	330.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0375519_3	246199.CUS_5911	134.0	1.41e-36	N/A	N/A
Pfam	UHGV-0375519_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0375519_3	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0375519_3	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0375519_3	PF00717,PF01381,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0375519_4	UniRef90_A0A1M7SN53	75.1	1.81e-16	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0375519_4	1121335.Clst_0370	71.6	7.14e-16	N/A	N/A
Pfam	UHGV-0375519_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0375519_4	PF05339,NF041951,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0375519_5	PF11614,TIGR02588,COG2847	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0375519_9	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0375519_13	phrog_408	61.8	1.2e-17	N/A	unknown function
PHROG	UHGV-0375519_14	phrog_69	344.5	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0375519_14	UniRef90_A0A412L7W2	776.0	0	N/A	N/A
eggNOG-mapper	UHGV-0375519_14	1151292.QEW_2472	375.0	0	N/A	N/A
Pfam	UHGV-0375519_14	PF10926	N/A	N/A	N/A	DUF2800
COG	UHGV-0375519_14	COG2887	N/A	N/A	RecB family exonuclease	N/A
structural_annotation	UHGV-0375519_14	PF10926,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-0375519_15	phrog_112	217.1	0	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0375519_15	UniRef90_A0A412UNI7	360.0	0	N/A	N/A
eggNOG-mapper	UHGV-0375519_15	573061.Clocel_0760	239.0	0	N/A	N/A
Pfam	UHGV-0375519_15	PF10991	N/A	N/A	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
structural_annotation	UHGV-0375519_15	PF10991,MF_04153	N/A	N/A	N/A	N/A
KOfam	UHGV-0375519_16	K02334	897.4	0	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	N/A
PHROG	UHGV-0375519_16	phrog_17	412.9	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0375519_16	UniRef90_A0A412UNJ8	1283.0	0	POLAc domain-containing protein	N/A
eggNOG-mapper	UHGV-0375519_16	1296660.S5M5X4_9CAUD	764.0	0	DNA polymerase family A	N/A
Pfam	UHGV-0375519_16	PF00476	N/A	N/A	DNA polymerase family A	DNA_pol_A
structural_annotation	UHGV-0375519_16	PF00476,MF_04101,NF011540,COG0749	N/A	N/A	N/A	N/A
PHROG	UHGV-0375519_17	phrog_256	1068.5	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0375519_17	UniRef90_UPI001D06E26F	840.0	0	virulence-associated E family protein	N/A
eggNOG-mapper	UHGV-0375519_17	536232.CLM_2670	829.0	0	virulence-associated E family protein	N/A
Pfam	UHGV-0375519_17	PF05272	N/A	N/A	Virulence-associated protein E-like domain	VapE-like_dom
COG	UHGV-0375519_17	COG5545	N/A	N/A	Predicted P-loop ATPase and inactivated derivatives	N/A
structural_annotation	UHGV-0375519_17	PF05272,MF_04000,NF005477,NF040562,COG5545	N/A	N/A	N/A	N/A
PHROG	UHGV-0375519_18	phrog_93	81.1	1.5e-23	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0375519_18	UniRef90_A0A412UNG8	200.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0375519_18	97138.C820_00219	105.0	4.45e-28	VRR-NUC domain-containing protein	N/A
structural_annotation	UHGV-0375519_18	PF01870,MF_00130,NF002584,COG1591	N/A	N/A	N/A	N/A
KOfam	UHGV-0375519_19	K14440	81.1	3.3e-38	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-0375519_19	phrog_62	411.9	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0375519_19	UniRef90_A0A412L7W0	902.0	0	ATP-dependent helicase	N/A
eggNOG-mapper	UHGV-0375519_19	97138.C820_00220	629.0	0	snf2 family	N/A
PADLOC	UHGV-0375519_19	ZorD1_00007	88.2	7.5e-26	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
Pfam	UHGV-0375519_19	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-0375519_19	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0375519_19	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0375519_19	PF13872,PF16203,MF_01821,NF041790,COG0553	N/A	N/A	N/A	N/A
UniRef90	UHGV-0375519_22	UniRef90_UPI000E4DC4DA	136.0	4.14e-37	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0375519_22	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0375519_22	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
structural_annotation	UHGV-0375519_23	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0375519_24	phrog_8680	257.1	0	N/A	unknown function
UniRef90	UHGV-0375519_24	UniRef90_A0A373KTP5	407.0	0	N/A	N/A
eggNOG-mapper	UHGV-0375519_24	411470.RUMGNA_02208	259.0	0	N/A	N/A
Pfam	UHGV-0375519_24	PF14386	N/A	N/A	N/A	DUF4417
structural_annotation	UHGV-0375519_24	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-0375519_26	phrog_9479	167.7	0	N/A	unknown function
structural_annotation	UHGV-0375519_26	PF15529	N/A	N/A	N/A	N/A
PHROG	UHGV-0375519_27	phrog_309	138.3	2.09999e-41	terminase small subunit	head and packaging
UniRef90	UHGV-0375519_27	UniRef90_UPI001B3C9B19	228.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0375519_27	1121091.AUMP01000003_gene2580	143.0	4.23052e-42	transposase activity	N/A
Pfam	UHGV-0375519_27	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
COG	UHGV-0375519_27	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-0375519_27	PF07141	N/A	N/A	N/A	N/A
KOfam	UHGV-0375519_28	K06909	77.8	1.6e-22	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0375519_28	phrog_2	84.7	1.8e-24	terminase large subunit	head and packaging
UniRef90	UHGV-0375519_28	UniRef90_UPI00189AB5B3	795.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0375519_28	1304866.K413DRAFT_3034	595.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0375519_28	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0375519_28	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0375519_28	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0375519_29	phrog_533	325.1	0	portal protein	head and packaging
UniRef90	UHGV-0375519_29	UniRef90_A0A2N0ULU9	830.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0375519_29	1304866.K413DRAFT_3035	470.0	0	N/A	N/A
structural_annotation	UHGV-0375519_29	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0375519_30	phrog_581	317.1	0	minor head protein	head and packaging
UniRef90	UHGV-0375519_30	UniRef90_A0A2N0ULU5	741.0	0	Putative ADP-ribosyltransferase Certhrax	N/A
eggNOG-mapper	UHGV-0375519_30	1449050.JNLE01000003_gene3892	364.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0375519_30	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0375519_30	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0375519_30	PF06152,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-0375519_32	phrog_2616	46.9	0.00000000000065	N/A	unknown function
structural_annotation	UHGV-0375519_32	PF01281	N/A	N/A	N/A	N/A
PHROG	UHGV-0375519_33	phrog_194	101.0	1.5e-29	head scaffolding protein	head and packaging
UniRef90	UHGV-0375519_33	UniRef90_A0A2N0ULW9	351.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0375519_33	742765.HMPREF9457_02126	174.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0375519_33	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0375519_33	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0375519_34	phrog_422	228.5	0	major head protein	head and packaging
eggNOG-mapper	UHGV-0375519_34	693746.OBV_18090	397.0	0	N/A	N/A
structural_annotation	UHGV-0375519_34	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0375519_35	phrog_541	80.4	2.1e-23	head-tail adaptor	connector
UniRef90	UHGV-0375519_35	UniRef90_A0A371AQT0	109.0	1.94e-28	N/A	N/A
eggNOG-mapper	UHGV-0375519_35	1449050.JNLE01000003_gene3888	82.0	1.7e-18	N/A	N/A
PHROG	UHGV-0375519_36	phrog_3366	73.6	2.5e-21	N/A	unknown function
eggNOG-mapper	UHGV-0375519_36	1449050.JNLE01000003_gene3887	87.0	3.57e-20	N/A	N/A
Pfam	UHGV-0375519_36	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0375519_36	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-0375519_37	phrog_556	118.8	1.7e-35	minor head protein	head and packaging
UniRef90	UHGV-0375519_37	UniRef90_UPI00189BC4F9	184.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0375519_37	1449050.JNLE01000003_gene3886	177.0	0	N/A	N/A
Pfam	UHGV-0375519_37	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0375519_37	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0375519_38	phrog_3266	102.8	2.5e-30	tail completion	connector
eggNOG-mapper	UHGV-0375519_38	1449050.JNLE01000003_gene3885	144.0	1.86933e-42	N/A	N/A
structural_annotation	UHGV-0375519_38	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0375519_39	phrog_3099	149.7	1.26117e-44	N/A	unknown function
eggNOG-mapper	UHGV-0375519_39	1160721.RBI_II00532	237.0	0	N/A	N/A
structural_annotation	UHGV-0375519_39	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0375519_40	phrog_11299	136.6	1.3e-40	N/A	unknown function
eggNOG-mapper	UHGV-0375519_40	1449050.JNLE01000003_gene3883	97.8	4.31e-24	N/A	N/A
structural_annotation	UHGV-0375519_40	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0375519_41	phrog_706	139.0	3.09995e-41	N/A	unknown function
UniRef90	UHGV-0375519_41	UniRef90_A0A2N0ULW2	366.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0375519_41	1160721.RBI_II00530	210.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0375519_41	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0375519_41	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0375519_43	phrog_1535	461.6	0	tail length tape measure protein	tail
UniRef90	UHGV-0375519_43	UniRef90_A0A2N0ULX3	1476.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0375519_43	33035.JPJF01000093_gene2243	348.0	0	phage tail tape measure protein	N/A
COG	UHGV-0375519_43	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0375519_43	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0375519_44	phrog_1194	61.0	2e-17	N/A	unknown function
eggNOG-mapper	UHGV-0375519_44	397290.C810_05238	94.0	1.02e-22	N/A	N/A
Pfam	UHGV-0375519_44	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0375519_44	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0375519_45	phrog_18190	44.2	0.000000000000055	N/A	unknown function

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0375519	Yes	32,389	42	78	1
UHGV-1573999	No	16,213	40	36	1