vOTU vOTU-032664

vOTU: vOTU-032664

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-032664
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00971 → vOTU-032664
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruthenibacterium → Ruthenibacterium lactatiformans
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0382540
Biosample ID	N/A
Genome length (bp)	28,506 bps
CheckV completeness	77.20% (Medium-quality)
CDS count	42
CDS density	90.81%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruthenibacterium → Ruthenibacterium lactatiformans	Total connections	133	Host agreement	98.5
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruthenibacterium → Ruthenibacterium lactatiformans	Total connections	132	Host agreement	99.24

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 77.2)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0382540_1	K14059	205.3	0	int; integrase	N/A
PHROG	UHGV-0382540_1	phrog_1	187.7	0	integrase	integration and excision
UniRef90	UHGV-0382540_1	UniRef90_UPI00195DFC45	429.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0382540_1	748224.HMPREF9436_01375	381.0	0	Phage integrase family	N/A
Pfam	UHGV-0382540_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0382540_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0382540_1	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0382540_2	phrog_27136	177.3	0	N/A	unknown function
UniRef90	UHGV-0382540_2	UniRef90_A0A6I3Q7L2	311.0	0	Zinc ribbon domain-containing protein	N/A
eggNOG-mapper	UHGV-0382540_2	1282664.H354_06486	143.0	1.3e-39	Short C-terminal domain	N/A
Pfam	UHGV-0382540_2	PF12773	N/A	N/A	Double zinc ribbon	DZR
PHROG	UHGV-0382540_3	phrog_87	77.0	1.8e-22	metallo-protease	other
UniRef90	UHGV-0382540_3	UniRef90_A0A8J6LZP4	111.0	2.94e-28	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0382540_3	1352230.S6B1N5_9CAUD	103.0	2.08e-26	Pfam:Peptidase_M78	N/A
Pfam	UHGV-0382540_3	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
structural_annotation	UHGV-0382540_3	PF06114,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-0382540_4	phrog_8	58.0	2.5e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0382540_4	UniRef90_UPI0012AC4AD7	99.4	3.19e-24	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0382540_4	411483.FAEPRAA2165_00756	86.3	3.79e-19	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-0382540_4	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0382540_4	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0382540_4	PF08667,NF041951,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0382540_5	UniRef90_A0A372V3V8	115.0	1.72e-32	XRE family transcriptional regulator	N/A
structural_annotation	UHGV-0382540_5	PF10078,NF040507,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0382540_6	phrog_17486	50.0	0.000000000000026	N/A	unknown function
UniRef90	UHGV-0382540_6	UniRef90_R7GAM5	99.4	9.62e-23	Conserved domain protein	N/A
UniRef90	UHGV-0382540_7	UniRef90_A0A1C6D8K2	50.8	0.000000747	DNA binding domain, excisionase family	N/A
eggNOG-mapper	UHGV-0382540_7	693977.Deipr_1987	48.9	0.00000221	Helix-turn-helix domain	N/A
Pfam	UHGV-0382540_7	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-0382540_7	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
COG	UHGV-0382540_7	COG3311	N/A	N/A	DNA-binding transcriptional regulator AlpA	N/A
structural_annotation	UHGV-0382540_7	PF12728,NF040990,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0382540_10	phrog_2872	201.2	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0382540_10	UniRef90_A0A372V4A8	403.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0382540_10	1415774.U728_1119	262.0	0	AAA domain	N/A
structural_annotation	UHGV-0382540_10	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-0382540_11	phrog_18107	86.9	2.9e-25	N/A	unknown function
eggNOG-mapper	UHGV-0382540_11	476272.RUMHYD_02831	143.0	2.48e-40	N/A	N/A
structural_annotation	UHGV-0382540_11	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-0382540_12	phrog_3490	119.7	2.1e-35	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0382540_12	UniRef90_A0A372V4F7	351.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0382540_12	476272.RUMHYD_01740	186.0	0	ERCC4 domain	N/A
Pfam	UHGV-0382540_12	PF02732	N/A	N/A	ERCC4 domain	ERCC4
COG	UHGV-0382540_12	COG1948	N/A	N/A	ERCC4-type crossover junction endonuclease	N/A
structural_annotation	UHGV-0382540_12	PF02732,NF040956,COG1948	N/A	N/A	N/A	N/A
KOfam	UHGV-0382540_13	K02316	78.0	1.4e-22	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0382540_13	phrog_11992	110.9	1.4e-32	N/A	unknown function
UniRef90	UHGV-0382540_13	UniRef90_A0A372V3Z0	332.0	0	ZnF_CHCC domain-containing protein	N/A
eggNOG-mapper	UHGV-0382540_13	1007096.BAGW01000023_gene150	90.1	1.37e-20	CHC2 zinc finger	N/A
PADLOC	UHGV-0382540_13	drt-cluster192	61.3	2.2e-17	DRT	DRT
Pfam	UHGV-0382540_13	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-0382540_13	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-0382540_13	PF01807,PF00401	N/A	N/A	N/A	N/A
PHROG	UHGV-0382540_14	phrog_8841	472.6	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0382540_14	UniRef90_A0A372V3W4	1222.0	0	N/A	N/A
eggNOG-mapper	UHGV-0382540_14	742738.HMPREF9460_02495	593.0	0	N/A	N/A
Pfam	UHGV-0382540_14	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-0382540_14	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-0382540_14	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0382540_14	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
PHROG	UHGV-0382540_18	phrog_757	170.4	0	DNA methyltransferase	other
UniRef90	UHGV-0382540_18	UniRef90_UPI000F0668EB	370.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0382540_18	1195236.CTER_1773	278.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0382540_18	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0382540_18	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0382540_20	phrog_38832	51.8	4.8e-21	N/A	unknown function
eggNOG-mapper	UHGV-0382540_20	665956.HMPREF1032_00143	67.4	0.00000000000802	N/A	N/A
UniRef90	UHGV-0382540_22	UniRef90_UPI0019673783	69.7	0.000000000000204	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0382540_23	1121335.Clst_0383	50.4	0.00000694	N/A	N/A
structural_annotation	UHGV-0382540_23	PF04545	N/A	N/A	N/A	N/A
KOfam	UHGV-0382540_25	K07474	120.5	2.3e-35	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0382540_25	phrog_51	109.6	2.6e-32	terminase small subunit	head and packaging
UniRef90	UHGV-0382540_25	UniRef90_A0A2S2DQC0	125.0	5.8e-34	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0382540_25	1268072.PSAB_06050	114.0	1.37e-30	terminase small subunit	N/A
Pfam	UHGV-0382540_25	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0382540_25	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0382540_25	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0382540_26	K06909	78.8	7.5e-23	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0382540_26	phrog_2	66.3	6.3e-19	terminase large subunit	head and packaging
UniRef90	UHGV-0382540_26	UniRef90_A0A372V3S5	925.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0382540_26	645991.Sgly_0335	613.0	0	Phage terminase, large subunit, PBSX family	N/A
COG	UHGV-0382540_26	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0382540_26	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0382540_27	phrog_533	241.2	0	portal protein	head and packaging
UniRef90	UHGV-0382540_27	UniRef90_A0A372V6F6	990.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-0382540_27	1507.HMPREF0262_01175	516.0	0	N/A	N/A
structural_annotation	UHGV-0382540_27	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0382540_28	phrog_581	262.6	0	minor head protein	head and packaging
UniRef90	UHGV-0382540_28	UniRef90_A0A1C6HBH6	389.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0382540_28	1507.HMPREF0262_01176	347.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0382540_28	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0382540_28	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0382540_28	PF06152,NF005921,TIGR01641,COG2153	N/A	N/A	N/A	N/A
PHROG	UHGV-0382540_30	phrog_2303	60.6	3.2e-17	head scaffolding protein	head and packaging
UniRef90	UHGV-0382540_31	UniRef90_A0A644YJM4	324.0	0	S-l_SbsC_C domain-containing protein	N/A
structural_annotation	UHGV-0382540_31	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0382540_33	phrog_541	71.5	1.1e-20	head-tail adaptor	connector
eggNOG-mapper	UHGV-0382540_33	1507.HMPREF0262_01180	98.2	9.96e-25	N/A	N/A
PHROG	UHGV-0382540_34	phrog_8710	83.7	1.8e-24	N/A	unknown function
eggNOG-mapper	UHGV-0382540_34	1507.HMPREF0262_01181	93.2	3.86e-23	N/A	N/A
structural_annotation	UHGV-0382540_34	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-0382540_35	UniRef90_UPI0003798593	85.9	3.56e-19	minor capsid protein	N/A
eggNOG-mapper	UHGV-0382540_35	1507.HMPREF0262_01182	90.1	1.41e-21	N/A	N/A
PHROG	UHGV-0382540_36	phrog_2595	69.8	3.8e-20	head-tail connector protein	connector
UniRef90	UHGV-0382540_36	UniRef90_UPI000A26871F	112.0	3.38e-29	minor capsid protein	N/A
eggNOG-mapper	UHGV-0382540_36	1304866.K413DRAFT_0780	68.2	0.00000000000075	N/A	N/A
Pfam	UHGV-0382540_36	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0382540_36	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0382540_37	phrog_820	125.2	2.7e-37	major tail protein	tail
eggNOG-mapper	UHGV-0382540_37	1507.HMPREF0262_01184	208.0	0	domain, Protein	N/A
COG	UHGV-0382540_37	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0382540_37	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0382540_38	phrog_8300	93.0	2.1e-27	N/A	unknown function
eggNOG-mapper	UHGV-0382540_38	1507.HMPREF0262_01185	95.9	2.51e-24	N/A	N/A
structural_annotation	UHGV-0382540_38	PF06896	N/A	N/A	N/A	N/A
PHROG	UHGV-0382540_39	phrog_8355	80.8	8e-24	N/A	unknown function
UniRef90	UHGV-0382540_39	UniRef90_UPI0018A7EA5D	110.0	7.59e-29	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0382540_39	1507.HMPREF0262_01186	93.6	2.92e-23	N/A	N/A
structural_annotation	UHGV-0382540_39	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0382540_40	phrog_58	105.9	3.9e-31	tail length tape measure protein	tail
UniRef90	UHGV-0382540_40	UniRef90_S9TWQ7	122.0	8.71e-25	Phage-like protein	N/A
eggNOG-mapper	UHGV-0382540_40	1122918.KB907248_gene4489	128.0	2.17e-27	minor tail protein	N/A
COG	UHGV-0382540_40	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0382540_41	phrog_1194	55.0	0.0000000000000012	N/A	unknown function
eggNOG-mapper	UHGV-0382540_41	742740.HMPREF9474_03515	63.2	0.0000000000528	N/A	N/A
Pfam	UHGV-0382540_41	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0382540_41	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0382540_42	phrog_13879	239.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0382540_42	665956.HMPREF1032_03630	170.0	2.77457e-43	N/A	N/A
structural_annotation	UHGV-0382540_42	PF06588,TIGR01646,COG3500	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0382540	Yes	28,506	54	77	1
UHGV-0115745	No	15,735	53	41	1
UHGV-1633230	No	15,735	53	41	1