vOTU vOTU-032930

vOTU: vOTU-032930

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-032930
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00007 → vOTU-032930
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1334244
Biosample ID	N/A
Genome length (bp)	51,538 bps
CheckV completeness	89.44% (Medium-quality)
CDS count	92
CDS density	84.00%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	655	Host agreement	96.95
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 89.44)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1334244_1	K08131	74.1	7e-22	COL9A; collagen type IX alpha	N/A
PHROG	UHGV-1334244_1	phrog_5073	85.5	5.1e-25	tail fiber protein	tail
eggNOG-mapper	UHGV-1334244_1	411483.FAEPRAA2165_00757	161.0	1.82996e-41	N/A	N/A
Pfam	UHGV-1334244_1	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
PHROG	UHGV-1334244_6	phrog_16490	106.8	1.10001e-40	N/A	unknown function
eggNOG-mapper	UHGV-1334244_6	1408437.JNJN01000043_gene803	164.0	0	N/A	N/A
eggNOG-mapper	UHGV-1334244_7	1408437.JNJN01000043_gene802	116.0	6.04e-32	N/A	N/A
eggNOG-mapper	UHGV-1334244_8	1408437.JNJN01000043_gene801	85.1	1.09e-17	N/A	N/A
PHROG	UHGV-1334244_13	phrog_10980	52.5	0.000000000000011	N/A	unknown function
UniRef90	UHGV-1334244_13	UniRef90_G3MA20	67.8	0.00000000000616	Gp279	N/A
structural_annotation	UHGV-1334244_14	PF07878	N/A	N/A	N/A	N/A
KOfam	UHGV-1334244_16	K03496	234.5	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-1334244_16	phrog_164	162.3	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1334244_16	UniRef90_A0A1G6FF50	206.0	0	Chromosome partitioning protein	N/A
eggNOG-mapper	UHGV-1334244_16	1408423.JHYA01000021_gene392	188.0	0	Cellulose biosynthesis protein BcsQ	N/A
Pfam	UHGV-1334244_16	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-1334244_16	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-1334244_16	PF13614,MF_00533,NF010443,COG1192	N/A	N/A	N/A	N/A
PHROG	UHGV-1334244_18	phrog_4402	106.9	1.8e-31	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1334244_18	UniRef90_A0A0H5Q331	263.0	0	Rep_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1334244_18	999413.HMPREF1094_04438	146.0	5.06e-38	Initiator Replication protein	N/A
Pfam	UHGV-1334244_18	PF01051	N/A	N/A	Initiator Replication protein, WH1	Rep3_N
Pfam	UHGV-1334244_18	PF21205	N/A	N/A	Initiator Rep protein, WH2	Rep3_C
COG	UHGV-1334244_18	COG5527	N/A	N/A	Protein involved in initiation of plasmid replication	N/A
structural_annotation	UHGV-1334244_18	PF01051,PF21205,NF010305,COG5527	N/A	N/A	N/A	N/A
UniRef90	UHGV-1334244_19	UniRef90_A0A2A7AM70	191.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-1334244_19	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1334244_19	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1334244_23	phrog_8	54.7	0.0000000000000025	transcriptional regulator	transcription regulation
UniRef90	UHGV-1334244_23	UniRef90_A0A1C6D4U5	93.6	2.12e-22	Helix-turn-helix domain	N/A
eggNOG-mapper	UHGV-1334244_23	693746.OBV_43290	56.6	0.0000000143	addiction module antidote protein HigA	N/A
Pfam	UHGV-1334244_23	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-1334244_23	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-1334244_23	PF01381,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1334244_24	phrog_1468	42.0	0.0000000000034	transcriptional repressor	transcription regulation
UniRef90	UHGV-1334244_24	UniRef90_A0A8J6LUU7	54.7	0.0000000368	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1334244_24	428125.CLOLEP_02737	47.4	0.00000475	N/A	N/A
structural_annotation	UHGV-1334244_24	TIGR03070	N/A	N/A	N/A	N/A
PHROG	UHGV-1334244_25	phrog_4652	89.5	8e-27	N/A	unknown function
UniRef90	UHGV-1334244_25	UniRef90_A0A0P0DZ87	125.0	1.87e-32	Cubilin	N/A
eggNOG-mapper	UHGV-1334244_25	397290.C810_01459	163.0	0	N/A	N/A
structural_annotation	UHGV-1334244_25	TIGR02582,COG1604	N/A	N/A	N/A	N/A
PHROG	UHGV-1334244_26	phrog_15946	85.5	7.8e-25	N/A	unknown function
eggNOG-mapper	UHGV-1334244_26	1445613.JALM01000017_gene5891	57.4	0.0000000414	N/A	N/A
structural_annotation	UHGV-1334244_27	PF10922	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1334244_29	TIGR03826	N/A	N/A	N/A	N/A
Pfam	UHGV-1334244_31	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1334244_31	PF13443,TIGR02684,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1334244_32	PF14143	N/A	N/A	N/A	N/A
COG	UHGV-1334244_33	COG1327	N/A	N/A	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	N/A
structural_annotation	UHGV-1334244_33	PF04606,NF007241,COG3478	N/A	N/A	N/A	N/A
PHROG	UHGV-1334244_34	phrog_38771	64.1	1.7e-18	N/A	unknown function
PHROG	UHGV-1334244_35	phrog_2872	237.8	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1334244_35	UniRef90_A0A8J6JIF1	271.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1334244_35	754027.HMPREF9554_00709	211.0	0	N/A	N/A
Pfam	UHGV-1334244_35	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-1334244_35	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-1334244_36	phrog_18107	72.2	1e-20	N/A	unknown function
UniRef90	UHGV-1334244_36	UniRef90_UPI00058F46CC	92.8	2.9e-20	N/A	N/A
eggNOG-mapper	UHGV-1334244_36	903814.ELI_1274	154.0	4.2039e-45	N/A	N/A
structural_annotation	UHGV-1334244_36	PF05037	N/A	N/A	N/A	N/A
KOfam	UHGV-1334244_37	K00558	117.7	9.1e-40	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1334244_37	phrog_116	148.2	0	DNA methyltransferase	other
UniRef90	UHGV-1334244_37	UniRef90_D4JYK0	588.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1334244_37	718252.FP2_16350	588.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1334244_37	oMTase_00004	168.7	0	orphan methyltransferase	RM
Pfam	UHGV-1334244_37	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1334244_37	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1334244_37	PF00145,TIGR00675	N/A	N/A	N/A	N/A
PHROG	UHGV-1334244_39	phrog_3136	117.9	2.8e-35	N/A	unknown function
UniRef90	UHGV-1334244_39	UniRef90_UPI001CBCD733	181.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1334244_39	97139.C824_00742	58.2	0.0000000468	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-1334244_39	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-1334244_39	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-1334244_40	phrog_843	61.4	1.1e-17	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1334244_40	UniRef90_UPI001159D907	116.0	1.19e-29	Holliday junction resolvase RecU	N/A
eggNOG-mapper	UHGV-1334244_40	929506.CbC4_1203	110.0	6.37e-28	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	N/A
structural_annotation	UHGV-1334244_40	PF03838,MF_00130,NF002581,COG3331	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1334244_42	PF02185	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1334244_44	MF_00085,TIGR00037,COG0231	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1334244_46	MF_00085,NF003076,COG0231	N/A	N/A	N/A	N/A
PHROG	UHGV-1334244_50	phrog_2118	98.7	7.5e-29	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1334244_50	UniRef90_UPI0012DD5A09	199.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1334244_50	1511.CLOST_1546	116.0	4.28e-32	HNH endonuclease	N/A
Pfam	UHGV-1334244_50	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1334244_50	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1334244_50	TIGR02646,COG1403	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1334244_51	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-1334244_52	K17080	76.0	7.2e-23	PHB1; prohibitin 1	N/A
PHROG	UHGV-1334244_52	phrog_200	153.6	1.4013e-45	lipoprotein	other
UniRef90	UHGV-1334244_52	UniRef90_D4KCF4	383.0	0	Membrane protease subunits, stomatin/prohibitin homologs	N/A
eggNOG-mapper	UHGV-1334244_52	657322.FPR_23460	383.0	0	prohibitin homologues	N/A
Pfam	UHGV-1334244_52	PF01145	N/A	N/A	SPFH domain / Band 7 family	Band_7
COG	UHGV-1334244_52	COG0330	N/A	N/A	Regulator of protease activity HflC, stomatin/prohibitin superfamily	N/A
structural_annotation	UHGV-1334244_52	PF01145,MF_01562,NF008181,COG0330	N/A	N/A	N/A	N/A
UniRef90	UHGV-1334244_54	UniRef90_UPI0012DD33A2	312.0	0	restriction endonuclease subunit M	N/A
eggNOG-mapper	UHGV-1334244_54	596329.HMPREF0631_0252	213.0	0	restriction endonuclease	N/A
PADLOC	UHGV-1334244_54	MTase_II_00176	158.1	0	Type II methyltransferase	RM
COG	UHGV-1334244_54	COG1002	N/A	N/A	Type II restriction/modification system, endonuclease and methylase domains	N/A
KOfam	UHGV-1334244_59	K02314	216.6	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-1334244_59	phrog_19	216.7	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1334244_59	UniRef90_UPI001CBC4B63	425.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1334244_59	1203606.HMPREF1526_01325	162.0	1.14066e-42	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-1334244_59	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-1334244_59	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-1334244_59	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-1334244_61	phrog_1709	59.4	6.9e-17	N/A	unknown function
eggNOG-mapper	UHGV-1334244_61	1280686.AUKE01000002_gene1328	73.9	5.46e-16	N/A	N/A
PHROG	UHGV-1334244_64	phrog_434	41.1	0.000000000025	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1334244_64	742738.HMPREF9460_00717	50.4	0.000000596	YqaJ viral recombinase family	N/A
COG	UHGV-1334244_64	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
KOfam	UHGV-1334244_70	K07741	91.0	3.2e-26	antB; anti-repressor protein	N/A
PHROG	UHGV-1334244_70	phrog_373	97.4	1.9e-28	anti-repressor	transcription regulation
UniRef90	UHGV-1334244_70	UniRef90_R6NBT5	198.0	0	Phage anti-repressor protein	N/A
eggNOG-mapper	UHGV-1334244_70	1158604.I591_00502	145.0	8.32e-40	AntA/AntB antirepressor	N/A
Pfam	UHGV-1334244_70	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
COG	UHGV-1334244_70	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-1334244_70	PF08346,TIGR02681,COG3561	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1334244_71	PF19807,NF041793,COG4877	N/A	N/A	N/A	N/A
UniRef90	UHGV-1334244_73	UniRef90_A0A417DZ16	52.4	0.000000241	HTH cro/C1-type domain-containing protein	N/A
structural_annotation	UHGV-1334244_73	PF20075,TIGR02612,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1334244_74	K14060	95.7	6.5e-28	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-1334244_74	phrog_125	130.5	1.3e-38	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1334244_74	UniRef90_UPI001A9B5A42	244.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-1334244_74	1443122.Z958_05795	159.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1334244_74	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-1334244_74	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1334244_74	PF00239,PF02796,NF009949,COG1961	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1334244_77	PF09202,MF_01177,TIGR02702,COG1846	N/A	N/A	N/A	N/A
PHROG	UHGV-1334244_78	phrog_38	155.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-1334244_78	UniRef90_A0A3D4KYF7	969.0	0	DOD-type homing endonuclease domain-containing protein	N/A
eggNOG-mapper	UHGV-1334244_78	1232453.BAIF02000058_gene1623	392.0	0	TIGRFAM Phage	N/A
COG	UHGV-1334244_78	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1334244_78	PF05203,PF17289,MF_04147,MF_01420,NF033889,NF007072,COG5362,COG1372	N/A	N/A	N/A	N/A
PHROG	UHGV-1334244_81	phrog_64	149.7	1.54143e-44	portal protein	head and packaging
UniRef90	UHGV-1334244_81	UniRef90_A0A371ILT4	334.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1334244_81	1121866.AUGK01000003_gene1429	280.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1334244_81	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1334244_81	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1334244_84	phrog_29	178.5	0	major head protein	head and packaging
UniRef90	UHGV-1334244_84	UniRef90_A0A2Z4QBB4	369.0	0	Major capsid protein E	N/A
eggNOG-mapper	UHGV-1334244_84	1347368.HG964404_gene4993	255.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-1334244_84	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-1334244_84	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-1334244_85	UniRef90_R6N215	84.7	4.59e-19	Phage QLRG family putative DNA packaging	N/A
structural_annotation	UHGV-1334244_85	PF05135	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1334244_86	PF19586,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1334244_88	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-1334244_89	phrog_158	44.0	0.0000000000041	major tail protein	tail
UniRef90	UHGV-1334244_89	UniRef90_UPI001D06C8CA	86.3	7.62e-19	phage tail protein	N/A
eggNOG-mapper	UHGV-1334244_89	1449343.JQLQ01000002_gene1514	58.9	0.0000000073	Phage tail tube protein, TTP	N/A
structural_annotation	UHGV-1334244_89	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-1334244_90	UniRef90_UPI000F53F45B	70.9	0.000000000000159	N/A	N/A
eggNOG-mapper	UHGV-1334244_90	1123263.AUKY01000015_gene1618	54.7	0.0000000475	N/A	N/A
Pfam	UHGV-1334244_90	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-1334244_90	PF16478	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1334244_91	1121333.JMLH01000047_gene1011	75.5	8.4e-16	N/A	N/A
PHROG	UHGV-1334244_92	phrog_1535	129.3	7e-39	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1334244_92	1121866.AUGK01000003_gene1437	239.0	0	phage tail tape measure protein	N/A
COG	UHGV-1334244_92	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
structural_annotation	UHGV-1334244_92	PF20155	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1334244	Yes	51,538	49	89	1
UHGV-0451316	No	40,801	48	71	1