vOTU vOTU-033061

vOTU: vOTU-033061

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-033061
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00007 → vOTU-033061
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1339823
Biosample ID	N/A
Genome length (bp)	32,490 bps
CheckV completeness	56.36% (Medium-quality)
CDS count	64
CDS density	82.34%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	236	Host agreement	95.76
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 56.36)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1339823_1	phrog_8	40.0	0.000000000081	transcriptional regulator	transcription regulation
UniRef90	UHGV-1339823_1	UniRef90_A0A316RBI4	78.6	1.65e-16	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1339823_1	663278.Ethha_0519	55.8	0.0000000262	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
COG	UHGV-1339823_1	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1339823_1	PF12844,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-1339823_2	UniRef90_UPI001956DCC9	66.6	0.000000000000471	helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-1339823_2	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1339823_2	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1339823_3	K07741	117.9	2.1e-34	antB; anti-repressor protein	N/A
PHROG	UHGV-1339823_3	phrog_130	244.0	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1339823_3	UniRef90_R5ANG2	306.0	0	Phage antirepressor protein	N/A
eggNOG-mapper	UHGV-1339823_3	1589751.A0A0C5AEJ9_9CAUD	260.0	0	DNA binding	N/A
Pfam	UHGV-1339823_3	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-1339823_3	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
structural_annotation	UHGV-1339823_3	PF03374,PF02498,TIGR02681,COG3645	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1339823_5	TIGR03826	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1339823_6	596152.DesU5LDRAFT_1910	96.7	5.23e-22	N/A	N/A
structural_annotation	UHGV-1339823_6	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1339823_8	PF14143	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1339823_9	1392491.JIAE01000001_gene943	48.5	0.00000428	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	N/A
COG	UHGV-1339823_9	COG1327	N/A	N/A	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	N/A
structural_annotation	UHGV-1339823_9	PF04606,NF007241	N/A	N/A	N/A	N/A
PHROG	UHGV-1339823_11	phrog_155	148.0	5.60519e-44	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1339823_11	UniRef90_E2ZNS9	272.0	0	Erf family protein	N/A
eggNOG-mapper	UHGV-1339823_11	748224.HMPREF9436_03360	272.0	0	ERF superfamily	N/A
Pfam	UHGV-1339823_11	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-1339823_11	PF04404,COG4712	N/A	N/A	N/A	N/A
KOfam	UHGV-1339823_12	K03111	114.7	1.3e-33	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1339823_12	phrog_44	123.0	2.4e-36	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1339823_12	UniRef90_A0A6N7TNV3	156.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1339823_12	748224.HMPREF9436_03359	151.0	2.8026e-45	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1339823_12	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1339823_12	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1339823_12	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1339823_12	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1339823_12	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1339823_14	phrog_843	62.9	3.5e-18	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1339823_14	UniRef90_UPI001159D907	114.0	9.15e-29	Holliday junction resolvase RecU	N/A
eggNOG-mapper	UHGV-1339823_14	929506.CbC4_1203	106.0	1.94e-26	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	N/A
structural_annotation	UHGV-1339823_14	PF03838,MF_00130,NF002581,COG3331	N/A	N/A	N/A	N/A
PHROG	UHGV-1339823_15	phrog_2715	124.7	4.6e-37	N/A	unknown function
eggNOG-mapper	UHGV-1339823_15	718252.FP2_16370	143.0	1.84999e-41	N/A	N/A
structural_annotation	UHGV-1339823_15	PF18406	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1339823_17	PF11998,COG5420	N/A	N/A	N/A	N/A
KOfam	UHGV-1339823_19	K00390	110.4	1.6e-32	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-1339823_19	phrog_424	125.3	4.4e-37	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1339823_19	UniRef90_A0A1Y4LU27	377.0	0	Adenylyl-sulfate reductase	N/A
eggNOG-mapper	UHGV-1339823_19	1408437.JNJN01000032_gene2312	337.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-1339823_19	DndC_00004	44.5	0.0000000000023	DndC	DND
Pfam	UHGV-1339823_19	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1339823_19	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1339823_19	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1339823_21	MF_00085,TIGR00037,COG0231	N/A	N/A	N/A	N/A
Pfam	UHGV-1339823_22	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-1339823_22	PF20331,COG5264	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1339823_23	PF16677	N/A	N/A	N/A	N/A
UniRef90	UHGV-1339823_26	UniRef90_UPI0012DD33A2	310.0	0	restriction endonuclease subunit M	N/A
eggNOG-mapper	UHGV-1339823_26	596329.HMPREF0631_0252	217.0	0	restriction endonuclease	N/A
PADLOC	UHGV-1339823_26	MTase_II_00176	160.0	0	Type II methyltransferase	RM
COG	UHGV-1339823_26	COG1002	N/A	N/A	Type II restriction/modification system, endonuclease and methylase domains	N/A
PHROG	UHGV-1339823_30	phrog_11947	49.7	0.000000000000037	N/A	unknown function
Pfam	UHGV-1339823_30	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1339823_30	COG1813	N/A	N/A	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	N/A
structural_annotation	UHGV-1339823_30	PF01381,MF_00535,TIGR03070,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1339823_33	NF041588	N/A	N/A	N/A	N/A
Pfam	UHGV-1339823_34	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-1339823_34	NF041588	N/A	N/A	N/A	N/A
Pfam	UHGV-1339823_35	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
structural_annotation	UHGV-1339823_35	PF14354,TIGR03655,COG3478	N/A	N/A	N/A	N/A
PHROG	UHGV-1339823_36	phrog_15768	91.1	5e-27	N/A	unknown function
UniRef90	UHGV-1339823_36	UniRef90_A0A6N7WKT0	95.9	1.1e-20	N/A	N/A
eggNOG-mapper	UHGV-1339823_36	748224.HMPREF9436_03357	78.6	0.00000000000000829	N/A	N/A
Pfam	UHGV-1339823_36	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-1339823_36	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-1339823_37	K02314	203.9	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-1339823_37	phrog_19	214.9	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1339823_37	UniRef90_UPI001CBC4B63	424.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1339823_37	1203606.HMPREF1526_01325	158.0	4.27999e-41	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-1339823_37	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-1339823_37	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-1339823_37	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-1339823_38	phrog_419	109.4	3.6e-32	N/A	unknown function
UniRef90	UHGV-1339823_38	UniRef90_A6MAI4	156.0	0	Gp119	N/A
eggNOG-mapper	UHGV-1339823_38	768486.EHR_02665	162.0	0	N/A	N/A
structural_annotation	UHGV-1339823_38	PF14083	N/A	N/A	N/A	N/A
PHROG	UHGV-1339823_39	phrog_1709	58.3	1.3e-16	N/A	unknown function
eggNOG-mapper	UHGV-1339823_39	500632.CLONEX_01053	85.5	1.25e-20	N/A	N/A
PHROG	UHGV-1339823_40	phrog_434	46.2	0.00000000000075	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1339823_40	742738.HMPREF9460_00717	48.9	0.00000238	YqaJ viral recombinase family	N/A
COG	UHGV-1339823_40	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
PHROG	UHGV-1339823_46	phrog_14275	75.0	8.6e-22	N/A	unknown function
eggNOG-mapper	UHGV-1339823_46	1280676.AUJO01000001_gene2313	74.3	0.000000000000674	N/A	N/A
Pfam	UHGV-1339823_46	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
structural_annotation	UHGV-1339823_46	PF03843,MF_00984,TIGR00752,COG3065	N/A	N/A	N/A	N/A
KOfam	UHGV-1339823_48	K07741	99.9	6.3e-29	antB; anti-repressor protein	N/A
PHROG	UHGV-1339823_48	phrog_373	148.3	5.74532e-44	anti-repressor	transcription regulation
UniRef90	UHGV-1339823_48	UniRef90_UPI001C039A6C	169.0	0	ORF6C domain-containing protein	N/A
eggNOG-mapper	UHGV-1339823_48	903814.ELI_3141	148.0	3.58999e-41	AntA/AntB antirepressor	N/A
Pfam	UHGV-1339823_48	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-1339823_48	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-1339823_48	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-1339823_48	PF10552,PF08346,TIGR02681,COG3561	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1339823_49	PF19807,NF041793,COG4877	N/A	N/A	N/A	N/A
UniRef90	UHGV-1339823_51	UniRef90_A0A417DZ16	52.4	0.000000241	HTH cro/C1-type domain-containing protein	N/A
structural_annotation	UHGV-1339823_51	PF20075,TIGR02612,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1339823_52	K14060	97.2	2.1e-28	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-1339823_52	phrog_125	130.3	1.4e-38	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1339823_52	UniRef90_UPI001A9B5A42	244.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-1339823_52	1443122.Z958_05795	157.0	1.4013e-45	Resolvase, N terminal domain	N/A
Pfam	UHGV-1339823_52	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-1339823_52	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1339823_52	PF00239,PF02796,NF009949,COG1961	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1339823_53	NF009949	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1339823_54	NF009949	N/A	N/A	N/A	N/A
PHROG	UHGV-1339823_56	phrog_38	186.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-1339823_56	UniRef90_A0A810QA10	489.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1339823_56	476272.RUMHYD_01940	340.0	0	TIGRFAM Phage	N/A
COG	UHGV-1339823_56	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1339823_56	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-1339823_58	phrog_64	149.1	2.24208e-44	portal protein	head and packaging
UniRef90	UHGV-1339823_58	UniRef90_A0A371ILT4	335.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1339823_58	1121866.AUGK01000003_gene1429	282.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1339823_58	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1339823_58	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1339823_61	phrog_29	179.8	0	major head protein	head and packaging
UniRef90	UHGV-1339823_61	UniRef90_A0A2Z4QBB4	372.0	0	Major capsid protein E	N/A
eggNOG-mapper	UHGV-1339823_61	1347368.HG964404_gene4993	261.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-1339823_61	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-1339823_61	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-1339823_62	UniRef90_R6N215	82.4	3.72e-18	Phage QLRG family putative DNA packaging	N/A
structural_annotation	UHGV-1339823_62	TIGR01560	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1339823_63	1298920.KI911353_gene2656	50.1	0.00000631	N/A	N/A
structural_annotation	UHGV-1339823_63	PF19586,TIGR01563,COG5614	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1339823	Yes	32,490	49	56	1
UHGV-0661575	No	19,360	49	34	1