vOTU vOTU-033151

vOTU: vOTU-033151

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-033151
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger formicilis
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00079 → vGENUS-01069 → vOTU-033151
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0785232
Biosample ID	N/A
Genome length (bp)	30,859 bps
CheckV completeness	75.49% (Medium-quality)
CDS count	48
CDS density	93.13%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger	Total connections	423	Host agreement	96.22
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger formicilis	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 75.49)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0785232_1	397290.C810_05185	71.6	0.00000000000000754	DNA-packaging protein gp3	N/A
KOfam	UHGV-0785232_2	K06909	398.1	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0785232_2	phrog_3717	160.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0785232_2	UniRef90_UPI001C3B9235	623.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0785232_2	411471.SUBVAR_06507	579.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0785232_2	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0785232_2	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0785232_2	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0785232_2	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0785232_2	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0785232_3	phrog_64	172.1	0	portal protein	head and packaging
UniRef90	UHGV-0785232_3	UniRef90_UPI0018A8A301	607.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0785232_3	673376.F2VHW1_9CAUD	214.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0785232_3	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0785232_3	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0785232_4	phrog_8680	199.8	0	N/A	unknown function
UniRef90	UHGV-0785232_4	UniRef90_A0A844D688	301.0	0	N/A	N/A
eggNOG-mapper	UHGV-0785232_4	411470.RUMGNA_02208	187.0	0	N/A	N/A
Pfam	UHGV-0785232_4	PF14386	N/A	N/A	N/A	DUF4417
structural_annotation	UHGV-0785232_4	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-0785232_6	phrog_2468	112.5	2.2e-33	head morphogenesis	head and packaging
UniRef90	UHGV-0785232_6	UniRef90_A0A7X5E1T7	414.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0785232_6	1504822.CCNO01000013_gene286	184.0	0	cell adhesion	N/A
Pfam	UHGV-0785232_6	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0785232_6	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0785232_6	PF06152,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0785232_9	phrog_5	71.7	1.4e-20	tail completion or Neck1 protein	connector
UniRef90	UHGV-0785232_9	UniRef90_A0A3A9EIF3	201.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0785232_9	1280685.AUKC01000004_gene1630	110.0	3.55e-29	N/A	N/A
Pfam	UHGV-0785232_9	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0785232_9	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0785232_9	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0785232_10	phrog_194	44.1	0.0000000000037	head scaffolding protein	head and packaging
UniRef90	UHGV-0785232_10	UniRef90_A0A6B9SU02	121.0	7.38e-31	Fibronectin autolysin	N/A
structural_annotation	UHGV-0785232_10	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0785232_11	phrog_544	116.8	2e-34	major head protein	head and packaging
UniRef90	UHGV-0785232_11	UniRef90_A0A1C6B5R0	319.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0785232_11	476272.RUMHYD_01776	290.0	0	N/A	N/A
structural_annotation	UHGV-0785232_11	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0785232_13	phrog_17977	82.5	3.3e-24	N/A	unknown function
UniRef90	UHGV-0785232_13	UniRef90_UPI00141211AB	87.0	9.78e-20	head-tail adaptor protein	N/A
structural_annotation	UHGV-0785232_13	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0785232_14	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-0785232_15	phrog_885	72.2	5.3e-21	major tail protein	tail
UniRef90	UHGV-0785232_15	UniRef90_A0A843J9F0	182.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0785232_15	1504822.CCNO01000012_gene492	214.0	0	N/A	N/A
structural_annotation	UHGV-0785232_15	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0785232_16	phrog_18646	52.2	0.0000000000000093	N/A	unknown function
PHROG	UHGV-0785232_18	phrog_6900	259.9	0	tail length tape measure protein	tail
UniRef90	UHGV-0785232_18	UniRef90_A0A3D0EFB4	254.0	0	Phage tail protein (Fragment)	N/A
eggNOG-mapper	UHGV-0785232_18	536233.CLO_1577	293.0	0	tape measure	N/A
COG	UHGV-0785232_18	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0785232_18	PF20155	N/A	N/A	N/A	N/A
PHROG	UHGV-0785232_19	phrog_33	73.9	3.6e-21	distal tail protein Dit	tail
UniRef90	UHGV-0785232_19	UniRef90_A0A1C6H6D2	123.0	5.04e-31	Phage-related protein	N/A
eggNOG-mapper	UHGV-0785232_19	1582149.A0A0A8WHP7_9CAUD	109.0	3.65e-26	Phage tail protein	N/A
structural_annotation	UHGV-0785232_19	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0785232_20	phrog_1067	387.2	0	minor head protein	head and packaging
UniRef90	UHGV-0785232_20	UniRef90_A0A413DNC1	508.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0785232_20	1160721.RBI_I01574	382.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0785232_20	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0785232_20	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0785232_20	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0785232_20	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
UniRef90	UHGV-0785232_21	UniRef90_UPI000C79F998	78.6	0.00000000000265	H-type lectin domain-containing protein	N/A
structural_annotation	UHGV-0785232_21	PF10651,NF041074	N/A	N/A	N/A	N/A
UniRef90	UHGV-0785232_22	UniRef90_A0A1C5MZC0	375.0	0	N/A	N/A
eggNOG-mapper	UHGV-0785232_22	1235802.C823_01049	266.0	0	N/A	N/A
structural_annotation	UHGV-0785232_22	PF19789	N/A	N/A	N/A	N/A
PHROG	UHGV-0785232_23	phrog_32779	47.8	1.4e-17	N/A	unknown function
eggNOG-mapper	UHGV-0785232_23	1120998.AUFC01000030_gene2248	76.6	0.000000000011	N/A	N/A
KOfam	UHGV-0785232_25	K07273	135.5	5.19999e-40	acm; lysozyme	N/A
PHROG	UHGV-0785232_25	phrog_291	103.6	1.8e-30	endolysin	lysis
UniRef90	UHGV-0785232_25	UniRef90_A0A1Q6T343	452.0	0	Peptidase_M23 domain-containing protein	N/A
eggNOG-mapper	UHGV-0785232_25	877424.ATWC01000009_gene1193	132.0	3.04e-30	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0785232_25	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
Pfam	UHGV-0785232_25	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0785232_25	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0785232_25	PF01551,PF01183,NF040883,COG0739,COG3757	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0785232_26	1042156.CXIVA_01580	58.2	0.00000000312	N/A	N/A
PHROG	UHGV-0785232_27	phrog_13256	54.8	0.000000000000001	N/A	unknown function
eggNOG-mapper	UHGV-0785232_27	1226322.HMPREF1545_00166	53.9	0.0000000106	N/A	N/A
KOfam	UHGV-0785232_28	K07684	42.5	0.000000000011	narL; two-component system, NarL family, nitrate/nitrite response regulator NarL	N/A
Pfam	UHGV-0785232_28	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
COG	UHGV-0785232_28	COG2197	N/A	N/A	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	N/A
PHROG	UHGV-0785232_29	phrog_3754	91.5	9.4e-27	N/A	unknown function
eggNOG-mapper	UHGV-0785232_29	476272.RUMHYD_01764	145.0	1.49939e-43	N/A	N/A
PHROG	UHGV-0785232_30	phrog_21718	118.6	3.8e-35	N/A	unknown function
eggNOG-mapper	UHGV-0785232_30	397290.C810_05210	97.1	2.98e-23	N/A	N/A
PHROG	UHGV-0785232_31	phrog_22984	76.9	8.6e-24	N/A	unknown function
PHROG	UHGV-0785232_32	phrog_16490	182.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0785232_32	1408437.JNJN01000043_gene803	80.1	0.00000000000000415	N/A	N/A
PHROG	UHGV-0785232_33	phrog_20016	194.7	0	N/A	unknown function
UniRef90	UHGV-0785232_33	UniRef90_A0A285PT46	194.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0785232_33	1226322.HMPREF1545_00077	176.0	0	N/A	N/A
structural_annotation	UHGV-0785232_33	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0785232_34	PF12510	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0785232_35	1226322.HMPREF1545_00079	66.2	0.00000000000181	N/A	N/A
KOfam	UHGV-0785232_37	K14059	162.0	0	int; integrase	N/A
PHROG	UHGV-0785232_37	phrog_1	156.9	0	integrase	integration and excision
UniRef90	UHGV-0785232_37	UniRef90_A0A1Y4T0F9	350.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0785232_37	748224.HMPREF9436_03382	270.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0785232_37	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0785232_37	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0785232_37	PF00589,PF14659,MF_01808,NF007246,COG4973	N/A	N/A	N/A	N/A
Pfam	UHGV-0785232_38	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0785232_38	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0785232_40	PF12688	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0785232_42	PF10007,MF_01819,TIGR03433,COG1733	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0785232_43	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0785232_44	phrog_8	51.7	0.000000000000021	transcriptional regulator	transcription regulation
UniRef90	UHGV-0785232_44	UniRef90_UPI001C009F10	83.6	7.55e-20	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0785232_44	665950.HMPREF1025_02561	60.1	0.0000000000196	sequence-specific DNA binding	N/A
Pfam	UHGV-0785232_44	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0785232_44	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0785232_44	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0785232_45	UniRef90_A0A367GIH6	104.0	3.56e-27	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0785232_45	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0785232_45	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0785232_45	PF05339,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0785232_46	596152.DesU5LDRAFT_1910	86.3	4.02e-18	N/A	N/A
structural_annotation	UHGV-0785232_46	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
PHROG	UHGV-0785232_48	phrog_7964	117.1	1.1e-34	N/A	unknown function
UniRef90	UHGV-0785232_48	UniRef90_A0A4S2Q3Z3	69.7	0.0000000000000343	Polymer-forming cytoskeletal protein (Fragment)	N/A
eggNOG-mapper	UHGV-0785232_48	768710.DesyoDRAFT_1067	90.1	1.47e-21	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	N/A
Pfam	UHGV-0785232_48	PF18836	N/A	N/A	YdcK Beta solenoid repeat	B_solenoid_ydck
COG	UHGV-0785232_48	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0785232	Yes	30,859	51	75	1
UHGV-2209353	No	24,739	52	61	1