vOTU vOTU-033322

vOTU: vOTU-033322

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-033322
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00007 → vOTU-033322
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1357349
Biosample ID	N/A
Genome length (bp)	36,247 bps
CheckV completeness	62.86% (Medium-quality)
CDS count	72
CDS density	85.11%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	326	Host agreement	97.85
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 62.86)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1357349_4	phrog_8	54.6	0.0000000000000023	transcriptional regulator	transcription regulation
UniRef90	UHGV-1357349_4	UniRef90_A0A373XY93	95.1	5.86e-23	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1357349_4	665956.HMPREF1032_02614	66.6	0.00000000000108	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-1357349_4	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1357349_4	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1357349_5	UniRef90_A0A7X1LWA7	80.5	2.17e-18	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1357349_5	428125.CLOLEP_02737	59.7	0.0000000000581	N/A	N/A
structural_annotation	UHGV-1357349_5	TIGR03070	N/A	N/A	N/A	N/A
KOfam	UHGV-1357349_6	K07741	133.3	3.5e-39	antB; anti-repressor protein	N/A
PHROG	UHGV-1357349_6	phrog_130	250.8	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1357349_6	UniRef90_R5ANG2	297.0	0	Phage antirepressor protein	N/A
eggNOG-mapper	UHGV-1357349_6	1589751.A0A0C5AEJ9_9CAUD	258.0	0	DNA binding	N/A
Pfam	UHGV-1357349_6	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-1357349_6	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
structural_annotation	UHGV-1357349_7	PF10922	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1357349_9	TIGR03826	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1357349_10	760568.Desku_0919	96.7	4.78e-22	N/A	N/A
structural_annotation	UHGV-1357349_10	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1357349_12	PF14143	N/A	N/A	N/A	N/A
KOfam	UHGV-1357349_13	K07738	40.3	0.000000000045	nrdR; transcriptional repressor NrdR	N/A
eggNOG-mapper	UHGV-1357349_13	1123399.AQVE01000002_gene2370	48.5	0.00000527	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	N/A
Pfam	UHGV-1357349_13	PF01096	N/A	N/A	Transcription factor S-II (TFIIS)	TFIIS_C
COG	UHGV-1357349_13	COG1327	N/A	N/A	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	N/A
structural_annotation	UHGV-1357349_13	PF04606,NF007241	N/A	N/A	N/A	N/A
PHROG	UHGV-1357349_15	phrog_99	124.6	6.7e-37	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1357349_15	UniRef90_A0A3G2N781	130.0	1.57e-35	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1357349_15	232237.Q7Y5F9_9CAUD	82.8	1.26e-17	HNH endonuclease	N/A
Pfam	UHGV-1357349_15	PF13392	N/A	N/A	HNH endonuclease	HNH_3
PHROG	UHGV-1357349_16	phrog_155	160.1	0	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1357349_16	UniRef90_UPI00130EB09C	238.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-1357349_16	748224.HMPREF9436_03360	217.0	0	ERF superfamily	N/A
Pfam	UHGV-1357349_16	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-1357349_16	PF04404,COG4712	N/A	N/A	N/A	N/A
KOfam	UHGV-1357349_17	K03111	115.0	1e-33	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1357349_17	phrog_44	124.0	1.2e-36	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1357349_17	UniRef90_A0A6N7TNV3	150.0	5.46506e-44	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1357349_17	748224.HMPREF9436_03359	145.0	6.01157e-43	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1357349_17	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1357349_17	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1357349_17	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1357349_17	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1357349_17	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1357349_18	phrog_28936	124.9	4.8e-37	N/A	unknown function
eggNOG-mapper	UHGV-1357349_18	573061.Clocel_3563	130.0	1.83e-35	N/A	N/A
structural_annotation	UHGV-1357349_18	PF11645,MF_01490,NF040854	N/A	N/A	N/A	N/A
KOfam	UHGV-1357349_19	K00558	160.5	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1357349_19	phrog_116	208.2	0	DNA methyltransferase	other
UniRef90	UHGV-1357349_19	UniRef90_D4JYK0	602.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1357349_19	718252.FP2_16350	602.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1357349_19	oMTase_00004	284.2	0	orphan methyltransferase	RM
Pfam	UHGV-1357349_19	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-1357349_19	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-1357349_19	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1357349_19	PF00145,TIGR00675	N/A	N/A	N/A	N/A
PHROG	UHGV-1357349_21	phrog_35094	85.6	6.8e-25	N/A	unknown function
eggNOG-mapper	UHGV-1357349_21	457424.BFAG_02409	115.0	1.81e-32	N/A	N/A
PHROG	UHGV-1357349_23	phrog_843	60.2	2.3e-17	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1357349_23	UniRef90_UPI001159D907	114.0	4.15e-29	Holliday junction resolvase RecU	N/A
eggNOG-mapper	UHGV-1357349_23	929506.CbC4_1203	109.0	1.12e-27	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	N/A
structural_annotation	UHGV-1357349_23	PF03838,MF_00130,NF002581,COG3331	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1357349_27	PF11998,COG5420	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1357349_30	PF16677	N/A	N/A	N/A	N/A
PHROG	UHGV-1357349_32	phrog_3136	153.0	0	N/A	unknown function
UniRef90	UHGV-1357349_32	UniRef90_UPI001CBCD733	173.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1357349_32	693746.OBV_25380	66.6	0.0000000000534	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-1357349_32	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-1357349_32	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1357349_39	NF041588	N/A	N/A	N/A	N/A
Pfam	UHGV-1357349_42	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
structural_annotation	UHGV-1357349_42	PF14354,TIGR03655	N/A	N/A	N/A	N/A
Pfam	UHGV-1357349_43	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-1357349_43	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1357349_43	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-1357349_44	K02314	214.1	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-1357349_44	phrog_19	224.4	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1357349_44	UniRef90_A0A564SBR1	434.0	0	Replicative DNA helicase	N/A
eggNOG-mapper	UHGV-1357349_44	1203606.HMPREF1526_01325	168.0	7.00649e-45	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-1357349_44	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-1357349_44	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-1357349_44	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
KOfam	UHGV-1357349_45	K03744	160.7	0	lemA; LemA protein	N/A
PHROG	UHGV-1357349_45	phrog_1383	118.9	3e-35	virion structural protein	head and packaging
UniRef90	UHGV-1357349_45	UniRef90_A0A6N9P3N6	210.0	0	LemA family protein	N/A
eggNOG-mapper	UHGV-1357349_45	657322.FPR_23420	226.0	0	LemA family	N/A
Pfam	UHGV-1357349_45	PF04011	N/A	N/A	LemA family	LemA
COG	UHGV-1357349_45	COG1704	N/A	N/A	Magnetosome formation protein MamQ, lipoprotein antigen LemA family	N/A
structural_annotation	UHGV-1357349_45	PF04011,NF040966,COG1704	N/A	N/A	N/A	N/A
PHROG	UHGV-1357349_46	phrog_3886	233.3	0	N/A	unknown function
eggNOG-mapper	UHGV-1357349_46	742740.HMPREF9474_02292	185.0	0	N/A	N/A
PHROG	UHGV-1357349_47	phrog_186	47.9	0.00000000000022	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1357349_47	UniRef90_R9KQ65	94.0	1.55e-19	RepA_N domain-containing protein	N/A
eggNOG-mapper	UHGV-1357349_47	397290.C810_00502	94.0	2.6e-20	Replication initiator protein A (RepA) N-terminus	N/A
Pfam	UHGV-1357349_47	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-1357349_47	COG1349	N/A	N/A	DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family	N/A
structural_annotation	UHGV-1357349_47	PF06970,MF_01177,NF040642,COG5625	N/A	N/A	N/A	N/A
PHROG	UHGV-1357349_49	phrog_434	45.1	0.0000000000015	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1357349_49	742738.HMPREF9460_00717	48.9	0.00000238	YqaJ viral recombinase family	N/A
COG	UHGV-1357349_49	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
PHROG	UHGV-1357349_54	phrog_14275	74.3	1.4e-21	N/A	unknown function
UniRef90	UHGV-1357349_54	UniRef90_A0A2V3JL54	67.4	0.000000000217	zinc_ribbon_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1357349_54	1280676.AUJO01000001_gene2313	87.0	2.18e-17	N/A	N/A
Pfam	UHGV-1357349_54	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
structural_annotation	UHGV-1357349_54	PF03843,MF_00984,TIGR00752,COG3065	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1357349_55	1280696.ATVY01000001_gene3550	50.8	0.00000117	N/A	N/A
Pfam	UHGV-1357349_55	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
KOfam	UHGV-1357349_57	K07741	75.5	9.9e-22	antB; anti-repressor protein	N/A
PHROG	UHGV-1357349_57	phrog_373	126.7	2e-37	anti-repressor	transcription regulation
UniRef90	UHGV-1357349_57	UniRef90_UPI001C039A6C	174.0	0	ORF6C domain-containing protein	N/A
eggNOG-mapper	UHGV-1357349_57	416870.llmg_0797	144.0	7.96001e-40	ORF6C domain	N/A
Pfam	UHGV-1357349_57	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-1357349_57	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-1357349_57	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-1357349_57	PF10552,PF08346,TIGR02681,COG3561	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1357349_58	PF19807,NF041793,COG4877	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1357349_60	PF20075	N/A	N/A	N/A	N/A
KOfam	UHGV-1357349_61	K14060	136.1	3.09999e-40	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-1357349_61	phrog_125	157.1	0	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1357349_61	UniRef90_A0A3D0LYX8	212.0	0	Resolvase	N/A
eggNOG-mapper	UHGV-1357349_61	411469.EUBHAL_01860	195.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1357349_61	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-1357349_61	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1357349_61	PF00239,PF02796,MF_00489,NF009949,COG1961	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1357349_63	PF09202,MF_01177,TIGR02702,COG1846	N/A	N/A	N/A	N/A
KOfam	UHGV-1357349_64	K14415	321.0	0	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	N/A
PHROG	UHGV-1357349_64	phrog_1075	433.9	0	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1357349_64	UniRef90_UPI00067F3ABF	473.0	0	RNA-splicing ligase RtcB	N/A
eggNOG-mapper	UHGV-1357349_64	1211844.CBLM010000044_gene358	466.0	0	tRNA-splicing ligase RtcB	N/A
Pfam	UHGV-1357349_64	PF01139	N/A	N/A	tRNA-splicing ligase RtcB	RtcB
COG	UHGV-1357349_64	COG1690	N/A	N/A	RNA-splicing ligase RtcB, repairs tRNA damage	N/A
structural_annotation	UHGV-1357349_64	PF01139,MF_03144,NF007153,COG1690	N/A	N/A	N/A	N/A
PHROG	UHGV-1357349_65	phrog_38	176.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-1357349_65	UniRef90_UPI000419A6BC	430.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1357349_65	1121866.AUGK01000003_gene1428	430.0	0	chromosome segregation	N/A
COG	UHGV-1357349_65	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1357349_65	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-1357349_67	phrog_64	152.6	1.4013e-45	portal protein	head and packaging
UniRef90	UHGV-1357349_67	UniRef90_A0A371ILT4	340.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1357349_67	1121866.AUGK01000003_gene1429	288.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1357349_67	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1357349_67	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
UniRef90	UHGV-1357349_68	UniRef90_A0A3E2TS79	67.8	0.00000000000291	N/A	N/A
eggNOG-mapper	UHGV-1357349_68	411473.RUMCAL_00360	64.7	0.00000000000666	N/A	N/A
structural_annotation	UHGV-1357349_68	PF14359,NF040588,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-1357349_71	phrog_29	178.6	0	major head protein	head and packaging
UniRef90	UHGV-1357349_71	UniRef90_A0A2Z4QBB4	370.0	0	Major capsid protein E	N/A
eggNOG-mapper	UHGV-1357349_71	1347368.HG964404_gene4993	264.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-1357349_71	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-1357349_71	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1357349	Yes	36,247	48	63	1
UHGV-0883786	No	17,169	48	30	1