vOTU vOTU-033503

vOTU: vOTU-033503

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-033503
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Christensenellales → CAG-74 → Limiplasma
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-06945 → vOTU-033503
Host lineage	Bacteria → Firmicutes_A → Clostridia → Christensenellales → CAG-74 → Limiplasma → Limiplasma merdipullorum
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1315183
Biosample ID	N/A
Genome length (bp)	25,677 bps
CheckV completeness	68.05% (Medium-quality)
CDS count	33
CDS density	94.11%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Christensenellales → CAG-74 → Limiplasma → Limiplasma merdipullorum	Total connections	18	Host agreement	77.78
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Christensenellales → CAG-74 → Limiplasma	Total connections	14	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 68.05)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1315183_1	phrog_361	89.1	4.4e-26	terminase small subunit	head and packaging
UniRef90	UHGV-1315183_1	UniRef90_UPI000307376F	89.0	3.7e-20	P27 family phage terminase small subunit	N/A
Pfam	UHGV-1315183_1	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-1315183_1	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
PHROG	UHGV-1315183_2	phrog_9	296.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-1315183_2	UniRef90_A0A7C6PV87	900.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-1315183_2	396034.A6XMJ4_9CAUD	759.0	0	Phage Terminase	N/A
Pfam	UHGV-1315183_2	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1315183_2	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
structural_annotation	UHGV-1315183_2	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1315183_3	phrog_12	168.0	0	portal protein	head and packaging
UniRef90	UHGV-1315183_3	UniRef90_A0A3D3WAI0	510.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1315183_3	398512.JQKC01000009_gene449	489.0	0	Phage portal protein	N/A
Pfam	UHGV-1315183_3	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1315183_3	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1315183_3	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1315183_3	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1315183_4	K06904	139.4	3.69999e-41	N/A	N/A
PHROG	UHGV-1315183_4	phrog_80	152.3	4.2039e-45	head maturation protease	head and packaging
UniRef90	UHGV-1315183_4	UniRef90_UPI000B7FD30C	226.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-1315183_4	398512.JQKC01000009_gene450	213.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-1315183_4	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-1315183_4	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-1315183_4	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-1315183_4	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-1315183_5	phrog_10	182.0	0	major head protein	head and packaging
UniRef90	UHGV-1315183_5	UniRef90_R5V6C2	453.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-1315183_5	1033744.CAEL01000029_gene1282	382.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-1315183_5	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1315183_5	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1315183_5	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1315183_5	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1315183_6	1235792.C808_00086	65.1	0.000000000053	Phage capsid family	N/A
Pfam	UHGV-1315183_6	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
COG	UHGV-1315183_6	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1315183_6	PF12733	N/A	N/A	N/A	N/A
PHROG	UHGV-1315183_7	phrog_2550	46.6	0.00000000000041	N/A	unknown function
eggNOG-mapper	UHGV-1315183_7	1121428.DESHY_20139___1	52.8	0.000000108	N/A	N/A
structural_annotation	UHGV-1315183_8	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1315183_9	PF05657	N/A	N/A	N/A	N/A
UniRef90	UHGV-1315183_10	UniRef90_A4J7Q8	75.9	0.0000000000000063	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-1315183_10	349161.Dred_2601	75.9	0.00000000000000106	Phage protein, HK97 gp10 family	N/A
structural_annotation	UHGV-1315183_10	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1315183_11	phrog_88	92.8	3.9e-27	major tail protein	tail
UniRef90	UHGV-1315183_11	UniRef90_A0A1C6DYZ6	123.0	5.63e-32	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-1315183_11	1195236.CTER_5106	108.0	4.85e-27	phage major tail protein, phi13 family	N/A
COG	UHGV-1315183_11	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1315183_11	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1315183_12	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-1315183_13	phrog_23464	147.8	6.16571e-44	N/A	unknown function
eggNOG-mapper	UHGV-1315183_13	349161.Dred_2598	165.0	1.36e-40	Phage tail tape measure protein, TP901 family	N/A
COG	UHGV-1315183_13	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1315183_13	PF20155	N/A	N/A	N/A	N/A
PHROG	UHGV-1315183_14	phrog_33	50.6	0.000000000000053	distal tail protein Dit	tail
structural_annotation	UHGV-1315183_14	PF05709,PF20753,TIGR01633,NF005176,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1315183_15	phrog_12312	100.9	1.3e-29	virion structural protein	head and packaging
UniRef90	UHGV-1315183_15	UniRef90_C8VXP0	143.0	2.62e-33	Phage minor structural protein	N/A
eggNOG-mapper	UHGV-1315183_15	349161.Dred_2593	147.0	3.7e-34	Prophage endopeptidase tail	N/A
Pfam	UHGV-1315183_15	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-1315183_15	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1315183_15	PF06605,TIGR01665,COG4926	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1315183_17	PF09931	N/A	N/A	N/A	N/A
PHROG	UHGV-1315183_19	phrog_18593	66.7	5.1e-20	N/A	unknown function
UniRef90	UHGV-1315183_19	UniRef90_A0A2V2G1S1	342.0	0	Chitinase	N/A
eggNOG-mapper	UHGV-1315183_19	411467.BACCAP_00281	101.0	8.13e-24	N/A	N/A
Pfam	UHGV-1315183_19	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
PHROG	UHGV-1315183_20	phrog_24267	94.3	5e-28	N/A	unknown function
UniRef90	UHGV-1315183_20	UniRef90_A0A2H4JF11	100.0	9.44e-23	Putative structural protein	N/A
eggNOG-mapper	UHGV-1315183_20	742742.HMPREF9452_00376	119.0	9.77e-33	tail collar domain protein	N/A
COG	UHGV-1315183_20	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-1315183_20	COG4675	N/A	N/A	N/A	N/A
PHROG	UHGV-1315183_21	phrog_24267	43.4	0.0000000000039	N/A	unknown function
UniRef90	UHGV-1315183_21	UniRef90_A0A7X0VY28	57.0	0.000000128	Phage tail protein	N/A
eggNOG-mapper	UHGV-1315183_21	1217705.F900_01087	58.5	0.0000000117	N/A	N/A
structural_annotation	UHGV-1315183_23	PF06347,COG4991	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1315183_25	PF09682,TIGR01673	N/A	N/A	N/A	N/A
KOfam	UHGV-1315183_26	K00571	153.6	1.4013e-45	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1315183_26	phrog_67	134.3	7.49975e-42	DNA methyltransferase	other
UniRef90	UHGV-1315183_26	UniRef90_A0A845SYJ8	268.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-1315183_26	1235797.C816_01333	264.0	0	DNA methylase	N/A
PADLOC	UHGV-1315183_26	MTase_II_00107	182.1	0	Type II methyltransferase	RM
Pfam	UHGV-1315183_26	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1315183_26	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1315183_26	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-1315183_28	K06400	321.4	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1315183_28	phrog_95	339.7	0	integrase	integration and excision
UniRef90	UHGV-1315183_28	UniRef90_A0A4R3L3V9	411.0	0	Site-specific DNA recombinase	N/A
eggNOG-mapper	UHGV-1315183_28	1128398.Curi_c13490	387.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1315183_28	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1315183_28	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-1315183_28	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1315183_28	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1315183_28	PF00239,PF13408,PF14235,NF041201,COG1961,COG1579	N/A	N/A	N/A	N/A
KOfam	UHGV-1315183_30	K07075	52.8	0.0000000000000023	N/A	N/A
UniRef90	UHGV-1315183_30	UniRef90_A0A7I8D4W2	207.0	0	Polbeta domain-containing protein	N/A
eggNOG-mapper	UHGV-1315183_30	718252.FP2_31830	192.0	0	Nucleotidyltransferase substrate binding protein like	N/A
Pfam	UHGV-1315183_30	PF18765	N/A	N/A	Polymerase beta, Nucleotidyltransferase	Polbeta
Pfam	UHGV-1315183_30	PF08780	N/A	N/A	Nucleotidyltransferase substrate binding protein like	NTase_sub_bind
NCBIFam	UHGV-1315183_30	TIGR01987.1	N/A	N/A	HI0074 family nucleotidyltransferase substrate-binding subunit	N/A
COG	UHGV-1315183_30	COG1669	N/A	N/A	Predicted nucleotidyltransferase MJ0435	N/A
structural_annotation	UHGV-1315183_30	PF08780,PF18765,TIGR01987,COG1669,COG2445	N/A	N/A	N/A	N/A
Pfam	UHGV-1315183_32	PF02368	N/A	N/A	Bacterial Ig-like domain (group 2)	Big_2
COG	UHGV-1315183_32	COG3210	N/A	N/A	Large exoprotein involved in heme utilization or adhesion	N/A
KOfam	UHGV-1315183_33	K22300	58.7	1.4e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1315183_33	phrog_4	51.4	0.000000000000028	transcriptional repressor	transcription regulation
UniRef90	UHGV-1315183_33	UniRef90_UPI001E5B5F6B	69.7	0.000000000000629	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1315183_33	1443122.Z958_05675	61.6	0.000000000143	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1315183_33	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1315183_33	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1315183_33	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1315183	Yes	25,677	59	68	1
UHGV-1801294	No	13,814	62	37	1