vOTU vOTU-033606

vOTU: vOTU-033606

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-033606
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00099 → vGENUS-00355 → vOTU-033606
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Ruminococcus_B → Ruminococcus_B gnavus
Host range breadth	Species
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1423583
Biosample ID	N/A
Genome length (bp)	32,924 bps
CheckV completeness	88.68% (Medium-quality)
CDS count	56
CDS density	93.99%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Ruminococcus_B → Ruminococcus_B gnavus	Total connections	455	Host agreement	87.47
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Ruminococcus_B → Ruminococcus_B gnavus	Total connections	3	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 88.68)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1423583_2	phrog_10091	101.5	7e-30	holin	lysis
UniRef90	UHGV-1423583_2	UniRef90_A0A2N5P008	152.0	0	Phage holin	N/A
eggNOG-mapper	UHGV-1423583_2	428127.EUBDOL_01206	126.0	4.24e-37	COG5546 Small integral membrane protein	N/A
Pfam	UHGV-1423583_2	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-1423583_2	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-1423583_2	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1423583_2	COG5546	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1423583_3	608534.GCWU000341_02271	53.1	0.0000000862	N/A	N/A
eggNOG-mapper	UHGV-1423583_4	931276.Cspa_c27110	52.0	0.0000000235	N/A	N/A
PHROG	UHGV-1423583_5	phrog_16164	44.9	0.00000000000046	N/A	unknown function
eggNOG-mapper	UHGV-1423583_5	411470.RUMGNA_00122	177.0	0	N/A	N/A
UniRef90	UHGV-1423583_6	UniRef90_UPI001D044F47	910.0	0	InlB B-repeat-containing protein	N/A
eggNOG-mapper	UHGV-1423583_6	1688.BCUN_1858	167.0	6.02558e-44	Listeria-Bacteroides repeat domain (List_Bact_rpt)	N/A
Pfam	UHGV-1423583_6	PF09479	N/A	N/A	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
NCBIFam	UHGV-1423583_6	TIGR02543.1	N/A	N/A	TIGR02543 family repeat protein	N/A
structural_annotation	UHGV-1423583_6	PF05895	N/A	N/A	N/A	N/A
PHROG	UHGV-1423583_7	phrog_588	491.3	0	tail fiber protein and host specificity	tail
UniRef90	UHGV-1423583_7	UniRef90_UPI0006C2B16B	1050.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-1423583_7	411470.RUMGNA_02230	875.0	0	N/A	N/A
structural_annotation	UHGV-1423583_7	PF14594,PF16820,TIGR01665,NF041894,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1423583_8	phrog_202	320.3	0	distal tail protein Dit	tail
UniRef90	UHGV-1423583_8	UniRef90_A7B3U8	981.0	0	Putative phage tail component domain protein	N/A
eggNOG-mapper	UHGV-1423583_8	411470.RUMGNA_02229	981.0	0	N/A	N/A
Pfam	UHGV-1423583_8	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-1423583_8	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-1423583_8	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1423583_8	PF05709,PF21708,TIGR01633,NF041449,COG4722,COG3506	N/A	N/A	N/A	N/A
PHROG	UHGV-1423583_9	phrog_9959	158.6	0	tail length tape measure protein	tail
UniRef90	UHGV-1423583_9	UniRef90_A0A8B3C0A6	827.0	0	TMP_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1423583_9	411470.RUMGNA_02228	830.0	0	tape measure	N/A
Pfam	UHGV-1423583_9	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-1423583_9	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-1423583_9	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1423583_9	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1423583_10	phrog_706	150.7	7.00649e-45	N/A	unknown function
UniRef90	UHGV-1423583_10	UniRef90_A7B3U5	318.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-1423583_10	411470.RUMGNA_02226	318.0	0	COG NOG24969 non supervised orthologous group	N/A
Pfam	UHGV-1423583_10	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1423583_10	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1423583_11	phrog_4450	111.4	5.8e-33	N/A	unknown function
UniRef90	UHGV-1423583_11	UniRef90_A0A7M2RHR3	57.8	0.0000000382	AP endonuclease	N/A
eggNOG-mapper	UHGV-1423583_11	411470.RUMGNA_02225	211.0	0	N/A	N/A
Pfam	UHGV-1423583_11	PF20378	N/A	N/A	N/A	DUF6673
structural_annotation	UHGV-1423583_11	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-1423583_12	phrog_3099	156.9	0	N/A	unknown function
eggNOG-mapper	UHGV-1423583_12	411470.RUMGNA_02224	288.0	0	N/A	N/A
structural_annotation	UHGV-1423583_12	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1423583_13	phrog_3266	158.1	0	tail completion	connector
eggNOG-mapper	UHGV-1423583_13	411470.RUMGNA_02223	269.0	0	N/A	N/A
structural_annotation	UHGV-1423583_13	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-1423583_14	phrog_556	139.5	7.60064e-42	minor head protein	head and packaging
UniRef90	UHGV-1423583_14	UniRef90_UPI001C8E2A32	212.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-1423583_14	411470.RUMGNA_02222	217.0	0	N/A	N/A
structural_annotation	UHGV-1423583_14	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-1423583_15	phrog_3366	92.8	1.3e-27	N/A	unknown function
eggNOG-mapper	UHGV-1423583_15	411470.RUMGNA_02221	225.0	0	N/A	N/A
Pfam	UHGV-1423583_15	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-1423583_15	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1423583_16	phrog_541	96.8	1.6e-28	head-tail adaptor	connector
eggNOG-mapper	UHGV-1423583_16	411470.RUMGNA_02220	213.0	0	N/A	N/A
PHROG	UHGV-1423583_17	phrog_422	208.9	0	major head protein	head and packaging
eggNOG-mapper	UHGV-1423583_17	411470.RUMGNA_02219	543.0	0	N/A	N/A
structural_annotation	UHGV-1423583_17	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-1423583_18	phrog_194	111.6	8e-33	head scaffolding protein	head and packaging
UniRef90	UHGV-1423583_18	UniRef90_A5KPA4	290.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-1423583_18	411470.RUMGNA_02218	305.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-1423583_18	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-1423583_18	PF06810	N/A	N/A	N/A	N/A
NCBIFam	UHGV-1423583_19	NF040910.1	N/A	N/A	CD1375 family protein	N/A
structural_annotation	UHGV-1423583_19	NF040910	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1423583_21	411470.RUMGNA_02215	285.0	0	N/A	N/A
eggNOG-mapper	UHGV-1423583_22	411470.RUMGNA_02214	177.0	0	N/A	N/A
structural_annotation	UHGV-1423583_22	PF08948,MF_01537,NF007541,COG3123	N/A	N/A	N/A	N/A
PHROG	UHGV-1423583_23	phrog_581	331.9	0	minor head protein	head and packaging
UniRef90	UHGV-1423583_23	UniRef90_UPI001EE14397	621.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-1423583_23	411470.RUMGNA_02213	724.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-1423583_23	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1423583_23	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1423583_23	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-1423583_24	phrog_533	337.5	0	portal protein	head and packaging
UniRef90	UHGV-1423583_24	UniRef90_A7B3T1	867.0	0	Putative phage minor capsid protein	N/A
eggNOG-mapper	UHGV-1423583_24	411470.RUMGNA_02212	867.0	0	N/A	N/A
structural_annotation	UHGV-1423583_24	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-1423583_25	K06909	71.9	9.9e-21	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1423583_25	phrog_2	84.7	1.8e-24	terminase large subunit	head and packaging
UniRef90	UHGV-1423583_25	UniRef90_A7B3T0	862.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-1423583_25	411470.RUMGNA_02211	862.0	0	N/A	N/A
Pfam	UHGV-1423583_25	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1423583_25	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1423583_25	PF04466,PF20441,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1423583_26	phrog_309	204.5	0	terminase small subunit	head and packaging
UniRef90	UHGV-1423583_26	UniRef90_A0A2N5PKF8	303.0	0	Transposase	N/A
eggNOG-mapper	UHGV-1423583_26	411470.RUMGNA_02210	206.0	0	transposase activity	N/A
Pfam	UHGV-1423583_26	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
COG	UHGV-1423583_26	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-1423583_26	PF07141	N/A	N/A	N/A	N/A
PHROG	UHGV-1423583_27	phrog_36	50.9	0.00000000000003	transcriptional regulator	transcription regulation
UniRef90	UHGV-1423583_27	UniRef90_A0A7X4ZQ48	134.0	7.49e-38	RNA polymerase subunit sigma-70	N/A
eggNOG-mapper	UHGV-1423583_27	1235792.C808_05360	124.0	7.79e-35	N/A	N/A
structural_annotation	UHGV-1423583_27	PF02996	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1423583_29	411470.RUMGNA_02203	244.0	0	N/A	N/A
UniRef90	UHGV-1423583_31	UniRef90_A0A395V1U8	91.3	7.12e-23	Restriction alleviation protein, Lar family	N/A
Pfam	UHGV-1423583_31	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
structural_annotation	UHGV-1423583_31	PF14354,TIGR03655	N/A	N/A	N/A	N/A
UniRef90	UHGV-1423583_32	UniRef90_A0A2N5PB17	209.0	0	N/A	N/A
Pfam	UHGV-1423583_32	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-1423583_32	NF041588	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1423583_33	PF02895	N/A	N/A	N/A	N/A
PHROG	UHGV-1423583_36	phrog_10714	58.4	1.1e-16	N/A	unknown function
UniRef90	UHGV-1423583_36	UniRef90_R6RDV7	55.1	0.000000109	DNA polymerase II large subunit	N/A
eggNOG-mapper	UHGV-1423583_36	1120998.AUFC01000030_gene2222	50.1	0.00000151	N/A	N/A
PHROG	UHGV-1423583_38	phrog_17690	78.6	6.5e-23	N/A	unknown function
UniRef90	UHGV-1423583_38	UniRef90_A0A6L5XWF4	77.0	1.4e-16	3-dehydroquinate synthase	N/A
eggNOG-mapper	UHGV-1423583_38	33035.JPJF01000107_gene432	95.9	9.19e-25	N/A	N/A
PHROG	UHGV-1423583_41	phrog_25488	179.6	0	N/A	unknown function
structural_annotation	UHGV-1423583_41	PF12844,PF01316,MF_00535,TIGR00270,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1423583_42	phrog_10469	197.1	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1423583_42	UniRef90_A0A2N5PKG2	468.0	0	Phage_rep_org_N domain-containing protein	N/A
eggNOG-mapper	UHGV-1423583_42	1291050.JAGE01000002_gene3381	179.0	0	Phage replisome organizer, N-terminal domain protein	N/A
Pfam	UHGV-1423583_42	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
NCBIFam	UHGV-1423583_42	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
structural_annotation	UHGV-1423583_42	PF09681,TIGR01714,COG3388	N/A	N/A	N/A	N/A
PHROG	UHGV-1423583_43	phrog_244	84.3	1.7e-24	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1423583_43	887929.HMP0721_1279	127.0	2.65e-36	N/A	N/A
structural_annotation	UHGV-1423583_43	PF01870,MF_01490,COG1591	N/A	N/A	N/A	N/A
KOfam	UHGV-1423583_44	K03111	103.8	2.7e-30	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1423583_44	phrog_44	101.7	9e-30	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1423583_44	UniRef90_A0A2N5PKE3	275.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1423583_44	626523.GCWU000342_01558	130.0	7.72e-37	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1423583_44	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1423583_44	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1423583_44	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1423583_44	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1423583_44	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-1423583_45	K07455	206.2	0	recT; recombination protein RecT	N/A
PHROG	UHGV-1423583_45	phrog_148	224.8	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1423583_45	UniRef90_A0A2N5PKF9	536.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-1423583_45	1095750.HMPREF9970_1675	380.0	0	RecT family	N/A
Pfam	UHGV-1423583_45	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1423583_45	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-1423583_45	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1423583_45	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-1423583_46	phrog_674	180.1	0	N/A	unknown function
UniRef90	UHGV-1423583_46	UniRef90_UPI000462FA44	447.0	0	N/A	N/A
eggNOG-mapper	UHGV-1423583_46	742765.HMPREF9457_02106	143.0	9.41e-38	N/A	N/A
Pfam	UHGV-1423583_46	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-1423583_46	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-1423583_47	phrog_434	156.9	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1423583_47	UniRef90_A0A2N5PKD7	458.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-1423583_47	1095750.HMPREF9970_1677	256.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-1423583_47	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-1423583_47	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-1423583_47	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-1423583_47	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1423583_51	1235790.C805_00014	48.9	0.000000271	N/A	N/A
KOfam	UHGV-1423583_52	K07741	135.0	1.2e-39	antB; anti-repressor protein	N/A
PHROG	UHGV-1423583_52	phrog_130	262.3	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1423583_52	UniRef90_A0A2N5NVG8	481.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-1423583_52	33035.JPJF01000057_gene3118	283.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-1423583_52	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-1423583_52	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-1423583_52	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1423583_52	PF03374,PF02498,TIGR02681,COG3645	N/A	N/A	N/A	N/A
PHROG	UHGV-1423583_53	phrog_8130	50.7	0.000000000000026	N/A	unknown function
UniRef90	UHGV-1423583_53	UniRef90_A0A2N5NVJ1	253.0	0	T5orf172 domain-containing protein	N/A
Pfam	UHGV-1423583_53	PF13455	N/A	N/A	Meiotically up-regulated gene 113	MUG113
PHROG	UHGV-1423583_54	phrog_28292	106.4	1.2e-31	N/A	unknown function
UniRef90	UHGV-1423583_54	UniRef90_A0A8B3BZ84	129.0	2.06e-37	3-hydroxyacyl-CoA dehydrogenase	N/A
eggNOG-mapper	UHGV-1423583_54	500632.CLONEX_01438	110.0	1.03e-30	N/A	N/A
PHROG	UHGV-1423583_56	phrog_373	105.2	8.1e-31	anti-repressor	transcription regulation
UniRef90	UHGV-1423583_56	UniRef90_UPI000E4A5456	440.0	0	Rha family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1423583_56	1304866.K413DRAFT_3063	330.0	0	TIGRFAM phage regulatory protein, Rha family	N/A
Pfam	UHGV-1423583_56	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
NCBIFam	UHGV-1423583_56	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-1423583_56	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1423583_56	PF09669,TIGR02681,COG3646	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1423583	Yes	32,924	43	89	1
UHGV-1335853	No	32,197	43	87	1
UHGV-0126455	No	31,898	43	86	1