vOTU vOTU-034005

vOTU: vOTU-034005

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-034005
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00001 → vSUBFAM-00494 → vOTU-034005
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Eubacterium_G → Eubacterium_G sp000434315
Host range breadth	Species
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-1381360
Biosample ID	N/A
Genome length (bp)	23,579 bps
CheckV completeness	54.33% (Medium-quality)
CDS count	45
CDS density	91.24%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Eubacterium_G → Eubacterium_G sp000434315	Total connections	30	Host agreement	80
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 54.33)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1381360_2	K14059	139.6	4.19997e-41	int; integrase	N/A
PHROG	UHGV-1381360_2	phrog_1	174.7	0	integrase	integration and excision
UniRef90	UHGV-1381360_2	UniRef90_UPI00093149AF	239.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-1381360_2	1462527.CCDM010000010_gene473	194.0	0	Phage integrase family	N/A
Pfam	UHGV-1381360_2	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1381360_2	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1381360_2	PF00589,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-1381360_3	K02342	177.8	0	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	N/A
PHROG	UHGV-1381360_3	phrog_192	154.4	0	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1381360_3	UniRef90_A0A7X8E1Y9	226.0	0	Exonuclease	N/A
eggNOG-mapper	UHGV-1381360_3	938288.HG326225_gene1118	228.0	0	EXOIII	N/A
PADLOC	UHGV-1381360_3	cd06127	129.4	3.6e-38	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
Pfam	UHGV-1381360_3	PF00929	N/A	N/A	Exonuclease	RNase_T
Pfam	UHGV-1381360_3	PF00533	N/A	N/A	BRCA1 C Terminus (BRCT) domain	BRCT
NCBIFam	UHGV-1381360_3	TIGR00573.1	N/A	N/A	exonuclease, DNA polymerase III, epsilon subunit family	N/A
COG	UHGV-1381360_3	COG0272	N/A	N/A	NAD-dependent DNA ligase	N/A
structural_annotation	UHGV-1381360_3	PF00929,PF00533,MF_00157,NF005289,COG0847	N/A	N/A	N/A	N/A
KOfam	UHGV-1381360_4	K23779	56.7	5.8e-16	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-1381360_4	phrog_3	41.8	0.000000000042	transcriptional repressor	transcription regulation
UniRef90	UHGV-1381360_4	UniRef90_A0A373VSJ5	103.0	4.62e-28	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1381360_4	411468.CLOSCI_01455	74.7	3.3e-17	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-1381360_4	retron_type_VI_hth_cluster2_1	43.9	0.0000000000067	N/A	Retron
Pfam	UHGV-1381360_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1381360_4	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1381360_6	K18830	77.2	1.5e-22	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1381360_6	phrog_4	52.9	0.0000000000000093	transcriptional repressor	transcription regulation
UniRef90	UHGV-1381360_6	UniRef90_A0A1Q6KH79	193.0	0	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-1381360_6	1235793.C809_03587	153.0	0	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1381360_6	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-1381360_6	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1381360_6	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1381360_8	phrog_6058	66.4	3e-19	N/A	unknown function
eggNOG-mapper	UHGV-1381360_8	1449343.JQLQ01000002_gene686	53.9	0.0000000248	N/A	N/A
structural_annotation	UHGV-1381360_8	PF12728,TIGR01764	N/A	N/A	N/A	N/A
PHROG	UHGV-1381360_10	phrog_3584	41.9	0.000000000015	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1381360_10	1235800.C819_00515	65.1	0.0000000000159	N/A	N/A
PHROG	UHGV-1381360_11	phrog_3584	69.6	5.1e-20	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1381360_11	UniRef90_UPI001D0EB55A	85.5	4.3e-17	helitron helicase-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1381360_11	483218.BACPEC_01173	102.0	3.59e-24	N/A	N/A
KOfam	UHGV-1381360_14	K07319	102.3	4.1e-30	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-1381360_14	phrog_16	222.9	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1381360_14	UniRef90_UPI000E475660	1563.0	0	SNF2-related protein	N/A
eggNOG-mapper	UHGV-1381360_14	1298920.KI911353_gene2709	1356.0	0	DEAD-like helicases superfamily	N/A
PADLOC	UHGV-1381360_14	MTase_II_00085	44.6	1.8e-17	Type II methyltransferase	RM
Pfam	UHGV-1381360_14	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-1381360_14	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1381360_14	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-1381360_14	PF01555,PF16203,PF04851,MF_01821,MF_00472,NF041790,NF008572,COG0553,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-1381360_16	phrog_17690	126.6	9.4e-38	N/A	unknown function
UniRef90	UHGV-1381360_16	UniRef90_A0A6L5XWF4	118.0	1.01e-31	3-dehydroquinate synthase	N/A
eggNOG-mapper	UHGV-1381360_16	33035.JPJF01000123_gene2433	114.0	4.17e-31	N/A	N/A
KOfam	UHGV-1381360_17	K01160	46.7	0.00000000000083	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1381360_17	phrog_140	114.4	8.2e-34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1381360_17	UniRef90_A0A373VSB3	232.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1381360_17	1292035.H476_1025	92.8	4.72e-22	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1381360_17	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1381360_17	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1381360_17	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1381360_18	PF04936	N/A	N/A	N/A	N/A
PHROG	UHGV-1381360_19	phrog_21026	55.5	0.000000000000001	N/A	unknown function
PHROG	UHGV-1381360_20	phrog_15198	53.3	0.0000000000000025	N/A	unknown function
UniRef90	UHGV-1381360_20	UniRef90_A0A416VUN0	58.2	0.00000000575	N/A	N/A
eggNOG-mapper	UHGV-1381360_20	658655.HMPREF0988_00863	57.4	0.00000000884	N/A	N/A
Pfam	UHGV-1381360_20	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-1381360_21	phrog_5051	119.7	2e-35	N/A	unknown function
PHROG	UHGV-1381360_22	phrog_20593	52.5	0.0000000000000053	N/A	unknown function
AcrCatalog	UHGV-1381360_22	cluster_27421	30.8	0.000654	NA	N/A
UniRef90	UHGV-1381360_25	UniRef90_A0A373LPL3	121.0	5.04e-35	Chemotaxis protein	N/A
eggNOG-mapper	UHGV-1381360_25	1304866.K413DRAFT_0813	68.6	0.0000000000000089	N/A	N/A
structural_annotation	UHGV-1381360_25	PF10723,NF008671,COG4710	N/A	N/A	N/A	N/A
PHROG	UHGV-1381360_26	phrog_924	47.5	0.00000000000023	N/A	unknown function
UniRef90	UHGV-1381360_26	UniRef90_A0A373VSI6	311.0	0	N/A	N/A
Pfam	UHGV-1381360_26	PF04448	N/A	N/A	N/A	DUF551
eggNOG-mapper	UHGV-1381360_27	411461.DORFOR_01156	179.0	0	N/A	N/A
structural_annotation	UHGV-1381360_27	PF06319,NF033832,COG5321	N/A	N/A	N/A	N/A
PHROG	UHGV-1381360_28	phrog_986	74.7	9.7e-22	RNA-binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1381360_28	UniRef90_UPI001F065E7B	57.4	0.000000493	N/A	N/A
eggNOG-mapper	UHGV-1381360_28	1204534.J9QD24_9CAUD	55.1	0.0000000685	N/A	N/A
Pfam	UHGV-1381360_28	PF12961	N/A	N/A	N/A	DUF3850
structural_annotation	UHGV-1381360_28	PF12961,NF003443,COG4043	N/A	N/A	N/A	N/A
PHROG	UHGV-1381360_30	phrog_11237	43.8	0.0000000000027	N/A	unknown function
eggNOG-mapper	UHGV-1381360_30	428125.CLOLEP_01348	50.1	0.00000171	N/A	N/A
KOfam	UHGV-1381360_31	K07451	47.4	0.00000000000039	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-1381360_31	phrog_119	69.5	4.7e-20	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1381360_31	UniRef90_A0A415MTD9	103.0	3.53e-26	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1381360_31	574375.BAGA_00230	87.0	1.04e-20	HNH endonuclease	N/A
Pfam	UHGV-1381360_31	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1381360_31	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1381360_33	phrog_9	276.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-1381360_33	UniRef90_A0A316SIU9	674.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-1381360_33	1235798.C817_02581	467.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-1381360_33	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1381360_33	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1381360_33	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1381360_34	phrog_12	107.0	1.4e-31	portal protein	head and packaging
UniRef90	UHGV-1381360_34	UniRef90_A0A316S734	318.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1381360_34	926561.KB900623_gene767	212.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-1381360_34	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1381360_34	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1381360_34	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1381360_34	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1381360_35	K01358	148.2	7.14662e-44	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1381360_35	phrog_94	240.1	0	head maturation protease	head and packaging
UniRef90	UHGV-1381360_35	UniRef90_UPI00111E41DA	239.0	0	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-1381360_35	1232452.BAIB02000007_gene1626	204.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1381360_35	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1381360_35	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1381360_35	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1381360_36	phrog_10	99.7	3.6e-29	major head protein	head and packaging
UniRef90	UHGV-1381360_36	UniRef90_UPI001BA6BAB6	405.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-1381360_36	1384484.AEQU_1180	314.0	0	Phage capsid family	N/A
Pfam	UHGV-1381360_36	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1381360_36	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1381360_36	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1381360_36	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1381360_37	phrog_749	41.3	0.000000000021	N/A	unknown function
UniRef90	UHGV-1381360_37	UniRef90_A0A1I3QJG6	70.9	0.0000000000000783	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-1381360_37	1121866.AUGK01000006_gene881	56.2	0.0000000108	N/A	N/A
PHROG	UHGV-1381360_38	phrog_5635	50.9	0.000000000000029	head-tail adaptor	connector
UniRef90	UHGV-1381360_38	UniRef90_UPI0011070497	103.0	1.46e-26	phage head closure protein	N/A
eggNOG-mapper	UHGV-1381360_38	1384484.AEQU_1178	73.2	0.00000000000000441	N/A	N/A
structural_annotation	UHGV-1381360_38	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1381360_39	1121866.AUGK01000006_gene883	64.3	0.0000000000102	N/A	N/A
structural_annotation	UHGV-1381360_39	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-1381360_40	phrog_5509	80.0	2.6e-23	neck protein	connector
UniRef90	UHGV-1381360_40	UniRef90_W0FMR6	98.6	7.18e-24	Gp9 protein	N/A
eggNOG-mapper	UHGV-1381360_40	1027396.LMOSA_21450	52.8	0.00000081	N/A	N/A
structural_annotation	UHGV-1381360_40	TIGR01725	N/A	N/A	N/A	N/A
UniRef90	UHGV-1381360_41	UniRef90_A0A316S919	148.0	1.29004e-41	Phage tail protein	N/A
eggNOG-mapper	UHGV-1381360_41	1384484.AEQU_1175	125.0	7.83e-34	N/A	N/A
structural_annotation	UHGV-1381360_41	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1381360_45	phrog_1533	67.5	9.7e-20	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1381360_45	596315.HMPREF0634_0226	54.3	0.00000568	Phage tail tape measure protein, TP901 family	N/A
COG	UHGV-1381360_45	COG5280	N/A	N/A	Phage-related minor tail protein	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1381360	Yes	23,579	34	54	1
UHGV-0102145	No	16,566	34	37	1