vOTU vOTU-034316

vOTU: vOTU-034316

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-034316
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00316 → vOTU-034316
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0067681
Biosample ID	SAMEA2466997
Genome length (bp)	39,099 bps
CheckV completeness	89.08% (Medium-quality)
CDS count	61
CDS density	92.60%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis	Total connections	165	Host agreement	92.73
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis	Total connections	7	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 89.08)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0067681_1	phrog_6616	40.5	0.000000000015	tail protein	tail
eggNOG-mapper	UHGV-0067681_1	411471.SUBVAR_06932	118.0	5.17e-29	N/A	N/A
PHROG	UHGV-0067681_2	phrog_1194	58.0	1.7e-16	N/A	unknown function
eggNOG-mapper	UHGV-0067681_2	411471.SUBVAR_06933	199.0	0	N/A	N/A
structural_annotation	UHGV-0067681_2	PF20458,TIGR02126,COG4718	N/A	N/A	N/A	N/A
PHROG	UHGV-0067681_3	phrog_1535	190.3	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0067681_3	665956.HMPREF1032_03628	212.0	0	domain protein	N/A
COG	UHGV-0067681_3	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0067681_4	phrog_706	97.7	1.3e-28	N/A	unknown function
UniRef90	UHGV-0067681_4	UniRef90_UPI0013141117	379.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0067681_4	665956.HMPREF1032_03058	238.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0067681_4	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0067681_4	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0067681_5	phrog_11299	86.5	1.4e-25	N/A	unknown function
eggNOG-mapper	UHGV-0067681_5	665956.HMPREF1032_03059	125.0	4.41e-35	N/A	N/A
structural_annotation	UHGV-0067681_5	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0067681_6	phrog_3099	67.5	2.5e-19	N/A	unknown function
eggNOG-mapper	UHGV-0067681_6	665956.HMPREF1032_03060	246.0	0	N/A	N/A
structural_annotation	UHGV-0067681_6	PF10772,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0067681_7	phrog_3266	75.5	6.8e-22	tail completion	connector
eggNOG-mapper	UHGV-0067681_7	663278.Ethha_0492	61.2	0.00000000051	N/A	N/A
structural_annotation	UHGV-0067681_7	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0067681_8	phrog_556	96.1	2.6e-28	minor head protein	head and packaging
UniRef90	UHGV-0067681_8	UniRef90_UPI001958E7C1	228.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0067681_8	665956.HMPREF1032_03062	177.0	0	Minor capsid protein	N/A
Pfam	UHGV-0067681_8	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0067681_8	PF11114	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0067681_9	411471.SUBVAR_06991	57.0	0.0000000049	N/A	N/A
Pfam	UHGV-0067681_9	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0067681_9	PF20536	N/A	N/A	N/A	N/A
PHROG	UHGV-0067681_10	phrog_541	60.4	3.2e-17	head-tail adaptor	connector
eggNOG-mapper	UHGV-0067681_10	663278.Ethha_0495	75.5	0.00000000000000104	N/A	N/A
PHROG	UHGV-0067681_11	phrog_10	181.8	0	major head protein	head and packaging
UniRef90	UHGV-0067681_11	UniRef90_A0A367GHJ2	762.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0067681_11	1120998.AUFC01000030_gene2236	526.0	0	Phage capsid family	N/A
Pfam	UHGV-0067681_11	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0067681_11	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0067681_11	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0067681_11	PF05065,PF13620,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0067681_12	phrog_194	59.5	4.9e-17	head scaffolding protein	head and packaging
UniRef90	UHGV-0067681_12	UniRef90_E6U604	164.0	0	Minor structural GP20 protein	N/A
eggNOG-mapper	UHGV-0067681_12	663278.Ethha_0497	164.0	0	N/A	N/A
Pfam	UHGV-0067681_12	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0067681_12	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0067681_15	phrog_581	337.4	0	minor head protein	head and packaging
UniRef90	UHGV-0067681_15	UniRef90_A0A1C5NZK4	562.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0067681_15	748224.HMPREF9436_03339	454.0	0	N/A	N/A
Pfam	UHGV-0067681_15	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0067681_15	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0067681_15	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0067681_16	phrog_533	362.5	0	portal protein	head and packaging
UniRef90	UHGV-0067681_16	UniRef90_A0A367GFE3	910.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-0067681_16	663278.Ethha_0090	572.0	0	N/A	N/A
Pfam	UHGV-0067681_16	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0067681_16	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0067681_17	K06909	136.6	2.5e-40	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0067681_17	phrog_2	159.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0067681_17	UniRef90_A0A367GH60	863.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0067681_17	1120746.CCNL01000014_gene2093	542.0	0	DNA packaging	N/A
Pfam	UHGV-0067681_17	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-0067681_17	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-0067681_17	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0067681_17	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0067681_17	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0067681_20	phrog_842	46.7	0.00000000000059	beta-glucosyl-HMC-alpha-glucosyltransferase	other
Pfam	UHGV-0067681_20	PF20691	N/A	N/A	TET-Associated Glycosyltransferase	TAGT
KOfam	UHGV-0067681_21	K03497	64.0	3.4e-18	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0067681_21	phrog_620	159.3	0	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0067681_21	UniRef90_UPI001E2E3568	152.0	1.26117e-43	ParB N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0067681_21	12402.Q708N6_9CAUD	145.0	6.87e-39	N-methyltransferase activity	N/A
PADLOC	UHGV-0067681_21	MTase_II_00015	98.0	1.8e-28	Type II methyltransferase	RM
Pfam	UHGV-0067681_21	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
structural_annotation	UHGV-0067681_21	PF02195,TIGR00180,COG5119	N/A	N/A	N/A	N/A
PHROG	UHGV-0067681_22	phrog_36	64.9	1.7e-18	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0067681_22	903814.ELI_1292	51.2	0.00000315	N/A	N/A
structural_annotation	UHGV-0067681_22	PF04545,PF18323,MF_00674,NF009172,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-0067681_26	phrog_2245	42.7	0.0000000000085	nucleoside triphosphate pyrophosphohydrolase	other
KOfam	UHGV-0067681_28	K00571	108.2	1.1e-31	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0067681_28	phrog_67	95.9	2.1e-29	DNA methyltransferase	other
UniRef90	UHGV-0067681_28	UniRef90_A0A3A6E967	427.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0067681_28	1449342.JQMR01000001_gene1025	368.0	0	DNA modification methylase DNA replication, recombination, and repair	N/A
PADLOC	UHGV-0067681_28	MTase_II_00157	78.7	4.6e-24	Type II methyltransferase	RM
Pfam	UHGV-0067681_28	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0067681_28	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0067681_28	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0067681_31	phrog_824	141.9	2.20004e-42	N/A	unknown function
UniRef90	UHGV-0067681_31	UniRef90_A0A6N8GXS9	154.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0067681_31	665956.HMPREF1032_00132	137.0	7.36e-40	VRR_NUC	N/A
Pfam	UHGV-0067681_31	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
PHROG	UHGV-0067681_33	phrog_16304	71.6	1.6e-20	N/A	unknown function
eggNOG-mapper	UHGV-0067681_33	1226322.HMPREF1545_00016	58.5	0.000000156	HNH endonuclease	N/A
Pfam	UHGV-0067681_33	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-0067681_33	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0067681_33	PF19808	N/A	N/A	N/A	N/A
PHROG	UHGV-0067681_34	phrog_392	112.3	6.1e-33	metal-dependent hydrolase	other
UniRef90	UHGV-0067681_34	UniRef90_A0A329URB3	267.0	0	Lactamase_B domain-containing protein	N/A
eggNOG-mapper	UHGV-0067681_34	665956.HMPREF1032_03101	202.0	0	May be involved in the transport of PQQ or its precursor to the periplasm	N/A
Pfam	UHGV-0067681_34	PF12706	N/A	N/A	Beta-lactamase superfamily domain	Lactamase_B_2
COG	UHGV-0067681_34	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-0067681_34	PF12706,MF_01818,TIGR03307,COG1234	N/A	N/A	N/A	N/A
KOfam	UHGV-0067681_35	K07455	196.5	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0067681_35	phrog_148	221.1	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0067681_35	UniRef90_A0A329URJ6	355.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-0067681_35	1408437.JNJN01000039_gene372	319.0	0	RecT family	N/A
Pfam	UHGV-0067681_35	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0067681_35	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0067681_35	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0067681_35	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0067681_36	phrog_674	148.3	4.90454e-44	N/A	unknown function
UniRef90	UHGV-0067681_36	UniRef90_UPI0012DE873F	147.0	1.1e-38	N/A	N/A
eggNOG-mapper	UHGV-0067681_36	1227266.HMPREF1551_00563	115.0	3.11e-27	N/A	N/A
Pfam	UHGV-0067681_36	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0067681_36	PF07083	N/A	N/A	N/A	N/A
KOfam	UHGV-0067681_42	K22300	55.4	0.0000000000000017	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0067681_42	phrog_8	54.0	0.0000000000000044	transcriptional regulator	transcription regulation
UniRef90	UHGV-0067681_42	UniRef90_UPI00195ED9E7	58.2	0.00000000256	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0067681_42	1410630.JNKP01000005_gene854	60.5	0.000000000703	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0067681_42	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0067681_42	COG0457	N/A	N/A	Tetratricopeptide (TPR) repeat	N/A
structural_annotation	UHGV-0067681_42	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0067681_43	phrog_1221	276.5	0	N/A	unknown function
UniRef90	UHGV-0067681_43	UniRef90_E2ZNU3	475.0	0	Phage/plasmid-related protein TIGR03299	N/A
eggNOG-mapper	UHGV-0067681_43	748224.HMPREF9436_03374	475.0	0	N/A	N/A
Pfam	UHGV-0067681_43	PF06067	N/A	N/A	N/A	DUF932
NCBIFam	UHGV-0067681_43	TIGR03299.1	N/A	N/A	phage/plasmid-like protein TIGR03299	N/A
structural_annotation	UHGV-0067681_43	PF06067,TIGR03299	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0067681_45	PF06531	N/A	N/A	N/A	N/A
PHROG	UHGV-0067681_48	phrog_8	42.0	0.0000000000094	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0067681_48	1378168.N510_01712	58.9	0.0000000456	N/A	N/A
Pfam	UHGV-0067681_48	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0067681_48	PF01381,PF08667,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0067681_50	K14059	179.4	0	int; integrase	N/A
PHROG	UHGV-0067681_50	phrog_1	187.4	0	integrase	integration and excision
UniRef90	UHGV-0067681_50	UniRef90_A0A367GI93	308.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0067681_50	1507.HMPREF0262_00307	193.0	0	Phage integrase family	N/A
Pfam	UHGV-0067681_50	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0067681_50	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0067681_50	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0067681_50	PF00589,PF14659,PF14657,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0067681_51	phrog_1129	62.6	5e-18	holin	lysis
UniRef90	UHGV-0067681_51	UniRef90_A0A367FT42	167.0	0	Enolase	N/A
eggNOG-mapper	UHGV-0067681_51	1007096.BAGW01000036_gene2663	109.0	3.18e-30	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0067681_51	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0067681_51	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0067681_52	phrog_4105	102.8	1.9e-30	N/A	unknown function
eggNOG-mapper	UHGV-0067681_52	657322.FPR_27220	150.0	0	N/A	N/A
KOfam	UHGV-0067681_53	K07273	181.2	0	acm; lysozyme	N/A
PHROG	UHGV-0067681_53	phrog_291	151.0	1.12104e-44	endolysin	lysis
UniRef90	UHGV-0067681_53	UniRef90_UPI00195E5E78	344.0	0	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-0067681_53	411471.SUBVAR_06927	323.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0067681_53	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0067681_53	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0067681_53	PF01183,MF_02227,NF002576,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0067681_55	phrog_4912	70.2	3.8e-20	tail fiber assembly	tail
UniRef90	UHGV-0067681_55	UniRef90_UPI0019223612	81.6	4.73e-17	phage tail assembly chaperone	N/A
eggNOG-mapper	UHGV-0067681_55	561229.Dd1591_4028	75.1	0.00000000000000196	Phage tail assembly chaperone protein	N/A
Pfam	UHGV-0067681_55	PF16778	N/A	N/A	Phage tail assembly chaperone protein	Phage_tail_APC
structural_annotation	UHGV-0067681_55	PF16778	N/A	N/A	N/A	N/A
KOfam	UHGV-0067681_56	K00986	75.3	8.9e-22	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-0067681_56	phrog_1423	144.5	9.20653e-43	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0067681_56	UniRef90_UPI0012B5656A	226.0	0	RNA-directed DNA polymerase	N/A
eggNOG-mapper	UHGV-0067681_56	411468.CLOSCI_01505	144.0	1.98e-36	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
PADLOC	UHGV-0067681_56	icity0040	41.3	0.000000000029	RT (reverse transcriptase)	CRISPR-CAS
Pfam	UHGV-0067681_56	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
COG	UHGV-0067681_56	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-0067681_56	PF00078,MF_01390,TIGR04416,COG3344	N/A	N/A	N/A	N/A
PHROG	UHGV-0067681_57	phrog_5302	171.4	0	tail protein	tail
eggNOG-mapper	UHGV-0067681_57	411470.RUMGNA_00248	152.0	1.24e-35	Phage tail-collar fibre protein	N/A
COG	UHGV-0067681_57	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
PHROG	UHGV-0067681_59	phrog_18444	84.5	7.2e-25	N/A	unknown function
UniRef90	UHGV-0067681_59	UniRef90_UPI00156E9A45	59.7	0.000000000177	peptide chain release factor 2	N/A
eggNOG-mapper	UHGV-0067681_59	1294142.CINTURNW_1707	62.0	0.00000000000362	N/A	N/A
PHROG	UHGV-0067681_60	phrog_18190	108.6	1.5e-34	N/A	unknown function
eggNOG-mapper	UHGV-0067681_60	411471.SUBVAR_06932	315.0	0	N/A	N/A
structural_annotation	UHGV-0067681_60	PF14594,PF16351,PF04620,NF033848,COG4379	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0067681_61	411471.SUBVAR_06933	62.0	0.00000000000473	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0067681	Yes	39,099	55	89	1
UHGV-1398821	No	36,549	55	85	1