vOTU vOTU-034644

vOTU: vOTU-034644

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-034644
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Actinobacteriota → Coriobacteriia → Coriobacteriales → Atopobiaceae → Paratractidigestivibacter → Paratractidigestivibacter faecalis
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-03361 → vOTU-034644
Host lineage	Bacteria → Actinobacteriota → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0000741
Biosample ID	SAMEA4765833
Genome length (bp)	43,430 bps
CheckV completeness	88.10% (Medium-quality)
CDS count	68
CDS density	90.73%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Actinobacteriota → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella	Total connections	8	Host agreement	75
PHIST-predicted host lineage	Bacteria → Actinobacteriota → Coriobacteriia → Coriobacteriales → Atopobiaceae → Paratractidigestivibacter → Paratractidigestivibacter faecalis	Total connections	6	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 88.1)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0000741_1	K01447	89.3	5.7e-26	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0000741_1	phrog_833	114.6	1.3e-39	endolysin	lysis
UniRef90	UHGV-0000741_1	UniRef90_A0A5K1ICW8	247.0	0	Bifunctional autolysin	N/A
eggNOG-mapper	UHGV-0000741_1	1120979.ATVB01000037_gene1492	148.0	3.94e-39	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0000741_1	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0000741_1	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
COG	UHGV-0000741_1	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0000741_1	PF01510,MF_04111,NF008758,NF040675,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-0000741_2	phrog_297	57.4	2.6e-16	holin	lysis
UniRef90	UHGV-0000741_2	UniRef90_UPI0009F738EC	130.0	7.23e-38	phage holin	N/A
eggNOG-mapper	UHGV-0000741_2	1120998.AUFC01000013_gene2982	101.0	6.34e-27	Holin, phage phi LC3 family	N/A
Pfam	UHGV-0000741_2	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-0000741_2	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-0000741_2	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0000741_2	COG5546	N/A	N/A	N/A	N/A
PHROG	UHGV-0000741_3	phrog_4105	52.5	0.0000000000000088	N/A	unknown function
eggNOG-mapper	UHGV-0000741_3	1394176.AWUO01000014_gene648	68.2	0.000000000000202	N/A	N/A
structural_annotation	UHGV-0000741_4	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0000741_5	phrog_16490	59.4	5.1e-17	N/A	unknown function
eggNOG-mapper	UHGV-0000741_5	397290.C810_05212	54.7	0.0000033	N/A	N/A
PHROG	UHGV-0000741_6	phrog_21718	44.2	0.00000000000045	N/A	unknown function
eggNOG-mapper	UHGV-0000741_6	397290.C810_05210	51.6	0.00000545	N/A	N/A
eggNOG-mapper	UHGV-0000741_8	476272.RUMHYD_01994	88.2	1.83e-16	N/A	N/A
PHROG	UHGV-0000741_9	phrog_6616	447.4	0	tail protein	tail
UniRef90	UHGV-0000741_9	UniRef90_A0A2Y9BMC1	293.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0000741_9	1121866.AUGK01000003_gene1439	353.0	0	Phage minor structural protein	N/A
COG	UHGV-0000741_9	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0000741_9	PF05113,NF033848,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0000741_10	phrog_1194	86.9	1.7e-25	N/A	unknown function
eggNOG-mapper	UHGV-0000741_10	1121866.AUGK01000003_gene1438	126.0	6.46e-36	N/A	N/A
Pfam	UHGV-0000741_10	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0000741_10	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0000741_11	phrog_1535	143.6	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0000741_11	1121866.AUGK01000003_gene1437	238.0	0	phage tail tape measure protein	N/A
COG	UHGV-0000741_11	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
UniRef90	UHGV-0000741_13	UniRef90_UPI0009316611	77.8	9.17e-16	N/A	N/A
Pfam	UHGV-0000741_13	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-0000741_13	PF16478	N/A	N/A	N/A	N/A
PHROG	UHGV-0000741_14	phrog_158	51.0	0.000000000000026	major tail protein	tail
UniRef90	UHGV-0000741_14	UniRef90_UPI001106E87B	184.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0000741_14	1232453.BAIF02000058_gene1634	81.6	1.24e-17	N/A	N/A
Pfam	UHGV-0000741_14	PF08813	N/A	N/A	Phage tail tube protein, TTP	Phage_tail_3
structural_annotation	UHGV-0000741_14	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0000741_15	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
UniRef90	UHGV-0000741_16	UniRef90_UPI001C963648	91.3	2.42e-20	HK97 gp10 family phage protein	N/A
structural_annotation	UHGV-0000741_16	PF17395,TIGR01725,COG5005	N/A	N/A	N/A	N/A
UniRef90	UHGV-0000741_18	UniRef90_UPI001C9486FC	116.0	2.46e-31	phage head-tail connector protein	N/A
Pfam	UHGV-0000741_18	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-0000741_18	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0000741_19	phrog_247	210.6	0	major head protein	head and packaging
UniRef90	UHGV-0000741_19	UniRef90_UPI001106BB9B	404.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-0000741_19	903814.ELI_3208	244.0	0	N/A	N/A
structural_annotation	UHGV-0000741_19	PF20036,MF_04113,TIGR04387,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0000741_20	UniRef90_UPI001C9809E0	74.7	0.00000000000027	N/A	N/A
Pfam	UHGV-0000741_20	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-0000741_20	PF06810,MF_02110	N/A	N/A	N/A	N/A
PHROG	UHGV-0000741_21	phrog_64	151.4	4.2039e-45	portal protein	head and packaging
UniRef90	UHGV-0000741_21	UniRef90_UPI001C94E255	517.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0000741_21	1121866.AUGK01000003_gene1429	299.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0000741_21	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0000741_21	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0000741_22	phrog_38	200.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0000741_22	UniRef90_UPI001106681D	832.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0000741_22	1121866.AUGK01000003_gene1428	384.0	0	chromosome segregation	N/A
NCBIFam	UHGV-0000741_22	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-0000741_22	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0000741_22	PF17289,PF04466,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
KOfam	UHGV-0000741_23	K14060	154.1	1.4013e-45	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-0000741_23	phrog_125	166.3	0	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0000741_23	UniRef90_UPI001BB21D57	246.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0000741_23	1408423.JHYA01000001_gene988	183.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0000741_23	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-0000741_23	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0000741_23	PF00239,PF02796,MF_00489,NF009949,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-0000741_24	UniRef90_UPI001C98641B	85.5	3e-20	helix-turn-helix domain-containing protein	N/A
COG	UHGV-0000741_24	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
KOfam	UHGV-0000741_30	K02315	98.1	1.1e-28	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0000741_30	phrog_50	77.6	2.2e-22	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0000741_30	UniRef90_X8HXR3	129.0	3.94e-33	IstB-like ATP-binding protein	N/A
eggNOG-mapper	UHGV-0000741_30	1111121.HMPREF1247_0043	102.0	1.44e-23	IstB-like ATP binding protein	N/A
Pfam	UHGV-0000741_30	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-0000741_30	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
PHROG	UHGV-0000741_31	phrog_1163	166.5	0	N/A	unknown function
UniRef90	UHGV-0000741_31	UniRef90_A0A7C9NN09	158.0	7.9874e-44	DNA replication protein	N/A
eggNOG-mapper	UHGV-0000741_31	139871.A9D9L3_9VIRU	150.0	1.04e-40	calcium ion binding	N/A
Pfam	UHGV-0000741_31	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-0000741_31	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
UniRef90	UHGV-0000741_34	UniRef90_A0A412HTW9	80.1	2.76e-16	N/A	N/A
eggNOG-mapper	UHGV-0000741_34	445975.COLSTE_02179	63.2	0.0000000000869	N/A	N/A
UniRef90	UHGV-0000741_38	UniRef90_A4E7A1	92.0	6.06e-23	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-0000741_38	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0000741_38	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0000741_38	PF01381,NF010465,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0000741_39	phrog_21525	44.5	0.0000000000011	N/A	unknown function
PHROG	UHGV-0000741_41	phrog_21525	42.8	0.0000000000094	N/A	unknown function
PHROG	UHGV-0000741_42	phrog_355	59.2	5.3e-17	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0000741_42	UniRef90_UPI001BB2BAFF	171.0	0	N/A	N/A
eggNOG-mapper	UHGV-0000741_42	97138.C820_00250	116.0	8.07e-31	N/A	N/A
Pfam	UHGV-0000741_42	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0000741_43	PF01649,MF_00500,TIGR00029,COG0268	N/A	N/A	N/A	N/A
PHROG	UHGV-0000741_44	phrog_21525	47.9	0.00000000000024	N/A	unknown function
Pfam	UHGV-0000741_46	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
KOfam	UHGV-0000741_48	K01520	163.7	0	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-0000741_48	phrog_135	154.7	0	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0000741_48	UniRef90_UPI001E3E2DB2	189.0	0	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-0000741_48	1120959.ATXF01000004_gene2616	147.0	2.32616e-43	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	N/A
Pfam	UHGV-0000741_48	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-0000741_48	NF001862.0	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-0000741_48	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-0000741_48	PF00692,MF_00116,NF001862,COG0756	N/A	N/A	N/A	N/A
Pfam	UHGV-0000741_49	PF13392	N/A	N/A	HNH endonuclease	HNH_3
PHROG	UHGV-0000741_50	phrog_2044	66.3	3.8e-19	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0000741_50	UniRef90_A0A4D6BGB6	53.1	0.000000162	Putative DNA-directed RNA polymerase	N/A
eggNOG-mapper	UHGV-0000741_50	1134413.ANNK01000054_gene2223	53.5	0.0000000187	N/A	N/A
structural_annotation	UHGV-0000741_50	MF_00337,NF010671,COG1722	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0000741_51	PF06530	N/A	N/A	N/A	N/A
KOfam	UHGV-0000741_56	K00558	243.2	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0000741_56	phrog_116	285.2	0	DNA methyltransferase	other
UniRef90	UHGV-0000741_56	UniRef90_A0A412AQ32	418.0	0	Cytosine-specific methyltransferase	N/A
eggNOG-mapper	UHGV-0000741_56	1384484.AEQU_0051	402.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0000741_56	MTase_II_00058	123.6	0	Type II methyltransferase	RM
Pfam	UHGV-0000741_56	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0000741_56	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0000741_56	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0000741_56	PF00145,MF_02100,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-0000741_58	K03111	133.2	3.1e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0000741_58	phrog_44	131.7	5.5e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0000741_58	UniRef90_UPI000E3BD68B	183.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0000741_58	521095.Apar_0020	183.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0000741_58	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0000741_58	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0000741_58	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0000741_58	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0000741_58	PF00436,MF_00984,NF005851,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0000741_59	phrog_561	93.9	7.4e-29	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0000741_59	UniRef90_A0A086Z1J6	253.0	0	Putative gp43	N/A
eggNOG-mapper	UHGV-0000741_59	1504822.CCNO01000013_gene307	258.0	0	N/A	N/A
structural_annotation	UHGV-0000741_59	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0000741_60	phrog_34396	173.4	0	N/A	unknown function
UniRef90	UHGV-0000741_60	UniRef90_UPI0009355547	142.0	1.74e-36	N/A	N/A
eggNOG-mapper	UHGV-0000741_60	469378.Ccur_02980	67.0	0.000000000826	N/A	N/A
Pfam	UHGV-0000741_60	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0000741_60	PF07083	N/A	N/A	N/A	N/A
KOfam	UHGV-0000741_61	K01160	52.9	0.0000000000000096	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0000741_61	phrog_140	78.9	7.5e-23	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0000741_61	UniRef90_A0A173XJ55	99.8	7.33e-24	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-0000741_61	1504822.CCNO01000013_gene309	102.0	1.38e-25	crossover junction endodeoxyribonuclease activity	N/A
Pfam	UHGV-0000741_61	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0000741_61	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0000741_61	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0000741_68	K07741	67.6	4.2e-19	antB; anti-repressor protein	N/A
PHROG	UHGV-0000741_68	phrog_130	184.1	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0000741_68	UniRef90_U2TPG4	273.0	0	BRO family, N-terminal domain protein	N/A
eggNOG-mapper	UHGV-0000741_68	1125712.HMPREF1316_2390	273.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0000741_68	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0000741_68	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0000741_68	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0000741_68	PF03374,PF02498,TIGR02681,COG3645	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0000741	Yes	43,430	69	88	1
UHGV-0003832	No	32,605	68	66	1