vOTU vOTU-034702

vOTU: vOTU-034702

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-034702
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00007 → vGENUS-00125 → vOTU-034702
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1435798
Biosample ID	N/A
Genome length (bp)	32,265 bps
CheckV completeness	55.98% (Medium-quality)
CDS count	60
CDS density	81.51%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	248	Host agreement	98.39
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 55.98)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-1435798_1	UniRef90_A0A2A7AM70	192.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-1435798_1	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1435798_1	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1435798_5	phrog_8	52.0	0.000000000000016	transcriptional regulator	transcription regulation
UniRef90	UHGV-1435798_5	UniRef90_A0A373XY93	94.7	8.31e-23	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1435798_5	665956.HMPREF1032_02614	62.8	0.0000000000343	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-1435798_5	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1435798_5	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1435798_6	UniRef90_A0A7X1LWA7	80.5	2.17e-18	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1435798_6	428125.CLOLEP_02737	59.7	0.0000000000581	N/A	N/A
structural_annotation	UHGV-1435798_6	TIGR03070	N/A	N/A	N/A	N/A
KOfam	UHGV-1435798_7	K07741	64.3	4e-18	antB; anti-repressor protein	N/A
PHROG	UHGV-1435798_7	phrog_130	226.2	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1435798_7	UniRef90_K0J5T4	195.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-1435798_7	698758.AXY_01910	195.0	0	Antirepressor	N/A
Pfam	UHGV-1435798_7	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-1435798_7	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-1435798_7	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1435798_7	PF03374,PF02498,TIGR02681,COG3617,COG3645	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1435798_8	PF10922	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1435798_9	TIGR03826	N/A	N/A	N/A	N/A
Pfam	UHGV-1435798_13	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1435798_13	PF13443,TIGR02684,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1435798_14	PF14143	N/A	N/A	N/A	N/A
COG	UHGV-1435798_15	COG1327	N/A	N/A	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	N/A
structural_annotation	UHGV-1435798_15	PF04606,NF007241	N/A	N/A	N/A	N/A
Pfam	UHGV-1435798_17	PF13451	N/A	N/A	Probable zinc-ribbon domain	zf-trcl
COG	UHGV-1435798_17	COG1278	N/A	N/A	Cold shock protein, CspA family	N/A
structural_annotation	UHGV-1435798_17	PF13451	N/A	N/A	N/A	N/A
PHROG	UHGV-1435798_18	phrog_2872	240.6	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1435798_18	UniRef90_A0A8J6JIF1	269.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1435798_18	754027.HMPREF9554_00709	214.0	0	N/A	N/A
Pfam	UHGV-1435798_18	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-1435798_18	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-1435798_19	phrog_18107	71.2	1.8e-20	N/A	unknown function
UniRef90	UHGV-1435798_19	UniRef90_UPI00058F46CC	92.4	4.08e-20	N/A	N/A
eggNOG-mapper	UHGV-1435798_19	903814.ELI_1274	154.0	2.8026e-45	N/A	N/A
structural_annotation	UHGV-1435798_19	PF05037	N/A	N/A	N/A	N/A
KOfam	UHGV-1435798_20	K00558	147.5	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1435798_20	phrog_116	191.7	0	DNA methyltransferase	other
UniRef90	UHGV-1435798_20	UniRef90_D4JYK0	646.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1435798_20	718252.FP2_16350	646.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1435798_20	oMTase_00004	206.7	0	orphan methyltransferase	RM
Pfam	UHGV-1435798_20	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1435798_20	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1435798_20	PF00145,TIGR00675	N/A	N/A	N/A	N/A
PHROG	UHGV-1435798_22	phrog_35094	95.0	9.6e-28	N/A	unknown function
eggNOG-mapper	UHGV-1435798_22	457424.BFAG_02409	117.0	1.55e-33	N/A	N/A
PHROG	UHGV-1435798_24	phrog_843	63.4	2.6e-18	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1435798_24	UniRef90_UPI001159D907	117.0	5.56e-30	Holliday junction resolvase RecU	N/A
eggNOG-mapper	UHGV-1435798_24	929506.CbC4_1203	107.0	6.67e-27	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	N/A
structural_annotation	UHGV-1435798_24	PF03838,MF_00130,NF002581,COG3331	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1435798_26	PF11998,COG5420	N/A	N/A	N/A	N/A
KOfam	UHGV-1435798_28	K00390	53.4	0.0000000000000038	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-1435798_28	phrog_424	70.8	2e-20	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1435798_28	UniRef90_A0A7X5E5X0	210.0	0	Adenylyl-sulfate reductase (Fragment)	N/A
eggNOG-mapper	UHGV-1435798_28	1408437.JNJN01000032_gene2312	187.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-1435798_28	BrxP_00001	46.4	0.00000000000052	BrxP	BREX
Pfam	UHGV-1435798_28	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1435798_28	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1435798_29	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-1435798_33	K22300	52.2	0.000000000000014	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1435798_33	phrog_11947	47.8	0.00000000000013	N/A	unknown function
Pfam	UHGV-1435798_33	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1435798_33	PF01381,MF_00535,TIGR03070,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1435798_35	NF041588	N/A	N/A	N/A	N/A
Pfam	UHGV-1435798_37	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
structural_annotation	UHGV-1435798_37	PF14354	N/A	N/A	N/A	N/A
PHROG	UHGV-1435798_38	phrog_678	47.1	0.00000000000046	replication initiation O-like	DNA, RNA and nucleotide metabolism
Pfam	UHGV-1435798_38	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-1435798_38	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-1435798_39	K02314	93.0	3.2e-27	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-1435798_39	phrog_19	107.9	9.6e-32	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1435798_39	UniRef90_A0A564SBR1	253.0	0	Replicative DNA helicase	N/A
eggNOG-mapper	UHGV-1435798_39	1203606.HMPREF1526_01325	96.3	5.9e-20	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-1435798_39	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-1435798_39	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-1435798_39	PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
KOfam	UHGV-1435798_40	K02314	109.4	4.1e-32	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-1435798_40	phrog_19	104.7	1e-30	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1435798_40	UniRef90_A0A645FCB4	107.0	2.47e-26	Replicative DNA helicase	N/A
eggNOG-mapper	UHGV-1435798_40	1123070.KB899247_gene1586	101.0	3.42e-23	DnaB-like helicase C terminal domain	N/A
Pfam	UHGV-1435798_40	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-1435798_40	COG0305	N/A	N/A	Replicative DNA helicase	N/A
PHROG	UHGV-1435798_43	phrog_434	43.3	0.0000000000058	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1435798_43	1378168.N510_00538	48.9	0.00000223	N/A	N/A
UniRef90	UHGV-1435798_46	UniRef90_UPI001C0EAFDF	106.0	3.29e-26	OB-fold putative lipoprotein	N/A
eggNOG-mapper	UHGV-1435798_46	1304866.K413DRAFT_0836	100.0	1.78e-24	tRNA_anti-like	N/A
Pfam	UHGV-1435798_46	PF12869	N/A	N/A	tRNA_anti-like	tRNA_anti-like
structural_annotation	UHGV-1435798_46	PF12869,MF_00720,TIGR03943,COG5235	N/A	N/A	N/A	N/A
NCBIFam	UHGV-1435798_47	NF038353.1	N/A	N/A	FxLYD domain-containing protein	N/A
COG	UHGV-1435798_47	COG0515	N/A	N/A	Serine/threonine protein kinase	N/A
structural_annotation	UHGV-1435798_47	PF09624,PF14263,MF_00791,NF038353,TIGR02588,COG4885	N/A	N/A	N/A	N/A
KOfam	UHGV-1435798_48	K07741	60.0	8.8e-17	antB; anti-repressor protein	N/A
PHROG	UHGV-1435798_48	phrog_130	220.9	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1435798_48	UniRef90_A0A1Y4EUA0	247.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-1435798_48	1289596.M1PKL6_9CAUD	237.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-1435798_48	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-1435798_48	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
structural_annotation	UHGV-1435798_48	PF02498,PF03374,TIGR02681,COG3645,COG3561	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1435798_49	PF19807,NF041793,COG4877	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1435798_51	PF20075	N/A	N/A	N/A	N/A
KOfam	UHGV-1435798_52	K14060	127.9	9.9e-38	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-1435798_52	phrog_125	157.3	0	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1435798_52	UniRef90_A0A3D0LYX8	211.0	0	Resolvase	N/A
eggNOG-mapper	UHGV-1435798_52	1410633.JHWR01000012_gene95	193.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1435798_52	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-1435798_52	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1435798_52	PF00239,PF02796,MF_00489,NF009949,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-1435798_53	K14415	326.0	0	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	N/A
PHROG	UHGV-1435798_53	phrog_1075	437.1	0	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1435798_53	UniRef90_UPI00067F3ABF	480.0	0	RNA-splicing ligase RtcB	N/A
eggNOG-mapper	UHGV-1435798_53	1211844.CBLM010000044_gene358	471.0	0	tRNA-splicing ligase RtcB	N/A
Pfam	UHGV-1435798_53	PF01139	N/A	N/A	tRNA-splicing ligase RtcB	RtcB
COG	UHGV-1435798_53	COG1690	N/A	N/A	RNA-splicing ligase RtcB, repairs tRNA damage	N/A
structural_annotation	UHGV-1435798_53	PF01139,MF_03144,NF007153,COG1690	N/A	N/A	N/A	N/A
PHROG	UHGV-1435798_54	phrog_38	175.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-1435798_54	UniRef90_UPI000419A6BC	431.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1435798_54	1121866.AUGK01000003_gene1428	431.0	0	chromosome segregation	N/A
COG	UHGV-1435798_54	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1435798_54	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-1435798_56	phrog_64	153.4	1.4013e-45	portal protein	head and packaging
UniRef90	UHGV-1435798_56	UniRef90_A0A371ILT4	338.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1435798_56	1121866.AUGK01000003_gene1429	288.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1435798_56	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1435798_56	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
UniRef90	UHGV-1435798_57	UniRef90_UPI0018A09237	69.7	0.000000000000466	N/A	N/A
eggNOG-mapper	UHGV-1435798_57	397290.C810_05229	70.1	0.0000000000000628	N/A	N/A
structural_annotation	UHGV-1435798_57	PF14359,NF040588,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-1435798_60	phrog_29	153.9	1.4013e-45	major head protein	head and packaging
UniRef90	UHGV-1435798_60	UniRef90_A0A2Z4QBB4	325.0	0	Major capsid protein E	N/A
eggNOG-mapper	UHGV-1435798_60	476272.RUMHYD_01946	221.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-1435798_60	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-1435798_60	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1435798	Yes	32,265	49	56	1
UHGV-1418866	No	33,008	49	57	1