vOTU vOTU-034822

vOTU: vOTU-034822

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-034822
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00124 → vGENUS-03869 → vOTU-034822
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1424532
Biosample ID	SAMEA2158062
Genome length (bp)	35,910 bps
CheckV completeness	88.82% (Medium-quality)
CDS count	58
CDS density	91.67%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	215	Host agreement	98.6
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium → Faecalibacterium prausnitzii_H	Total connections	5	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 88.82)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1424532_1	K14059	196.0	0	int; integrase	N/A
PHROG	UHGV-1424532_1	phrog_1	197.4	0	integrase	integration and excision
UniRef90	UHGV-1424532_1	UniRef90_A0A367GI93	247.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1424532_1	1507.HMPREF0262_00307	166.0	2.8026e-45	Phage integrase family	N/A
Pfam	UHGV-1424532_1	PF02899	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
Pfam	UHGV-1424532_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1424532_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1424532_1	PF00589,PF13102,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-1424532_2	UniRef90_A0A2A7AM70	381.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-1424532_2	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1424532_2	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1424532_6	phrog_888	135.1	4.6e-40	N/A	unknown function
UniRef90	UHGV-1424532_6	UniRef90_A0A6N7TMA2	314.0	0	SHOCT domain-containing protein	N/A
eggNOG-mapper	UHGV-1424532_6	1415774.U728_165	88.2	4.33e-18	Short C-terminal domain	N/A
Pfam	UHGV-1424532_6	PF14471	N/A	N/A	N/A	DUF4428
Pfam	UHGV-1424532_6	PF09851	N/A	N/A	Short C-terminal domain	SHOCT
structural_annotation	UHGV-1424532_6	PF15947,PF14471	N/A	N/A	N/A	N/A
KOfam	UHGV-1424532_9	K02342	192.6	0	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	N/A
PHROG	UHGV-1424532_9	phrog_192	173.6	0	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1424532_9	UniRef90_UPI0009BC4B95	283.0	0	exonuclease	N/A
eggNOG-mapper	UHGV-1424532_9	1123288.SOV_2c03960	277.0	0	DNA polymerase III	N/A
PADLOC	UHGV-1424532_9	cd06127	140.3	1.6e-41	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
Pfam	UHGV-1424532_9	PF00929	N/A	N/A	Exonuclease	RNase_T
Pfam	UHGV-1424532_9	PF00533	N/A	N/A	BRCA1 C Terminus (BRCT) domain	BRCT
NCBIFam	UHGV-1424532_9	TIGR00573.1	N/A	N/A	exonuclease, DNA polymerase III, epsilon subunit family	N/A
COG	UHGV-1424532_9	COG0272	N/A	N/A	NAD-dependent DNA ligase	N/A
structural_annotation	UHGV-1424532_9	PF00929,PF00533,MF_00157,NF005289,COG0847	N/A	N/A	N/A	N/A
KOfam	UHGV-1424532_10	K22300	55.0	0.0000000000000016	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1424532_10	phrog_8	48.2	0.00000000000021	transcriptional regulator	transcription regulation
UniRef90	UHGV-1424532_10	UniRef90_UPI00115ECC35	61.6	0.000000000663	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-1424532_10	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1424532_10	COG3780	N/A	N/A	DNA endonuclease related to intein-encoded endonucleases	N/A
structural_annotation	UHGV-1424532_10	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
Pfam	UHGV-1424532_11	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1424532_11	PF21291,TIGR03070,COG1476	N/A	N/A	N/A	N/A
COG	UHGV-1424532_16	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-1424532_16	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-1424532_17	phrog_72	54.9	0.0000000000000016	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1424532_17	411471.SUBVAR_05829	145.0	1.45006e-41	N/A	N/A
structural_annotation	UHGV-1424532_17	PF05772,NF007281	N/A	N/A	N/A	N/A
Pfam	UHGV-1424532_19	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-1424532_20	phrog_7566	79.8	2.3e-23	N/A	unknown function
eggNOG-mapper	UHGV-1424532_20	411471.SUBVAR_05830	105.0	2.25e-28	N/A	N/A
KOfam	UHGV-1424532_21	K03111	147.4	1.4013e-43	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1424532_21	phrog_44	146.0	1.90577e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1424532_21	UniRef90_A0A2A7ALU9	295.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1424532_21	748224.HMPREF9436_00638	218.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1424532_21	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1424532_21	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1424532_21	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1424532_21	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1424532_21	PF00436,MF_00984,NF005579,COG0629	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1424532_22	748224.HMPREF9436_00735	151.0	5.32003e-41	N/A	N/A
Pfam	UHGV-1424532_22	PF19481	N/A	N/A	N/A	DUF6017
COG	UHGV-1424532_22	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1424532_22	PF19481,PF01978,MF_01819,TIGR01610,COG5625	N/A	N/A	N/A	N/A
KOfam	UHGV-1424532_23	K03496	220.1	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-1424532_23	phrog_164	157.0	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1424532_23	UniRef90_A0A2A7B6H3	473.0	0	AAA_31 domain-containing protein	N/A
eggNOG-mapper	UHGV-1424532_23	411471.SUBVAR_05839	219.0	0	AAA domain	N/A
Pfam	UHGV-1424532_23	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-1424532_23	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-1424532_23	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
KOfam	UHGV-1424532_24	K03497	79.1	8.6e-23	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-1424532_24	phrog_4715	103.0	2.8e-30	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1424532_24	UniRef90_A0A2A7AMC5	848.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-1424532_24	411471.SUBVAR_05842	170.0	8.40779e-45	ParB-like nuclease domain	N/A
Pfam	UHGV-1424532_24	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-1424532_24	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1424532_24	PF02195,MF_02015,TIGR03764,COG1475	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1424532_25	PF04545	N/A	N/A	N/A	N/A
PHROG	UHGV-1424532_27	phrog_21498	302.1	0	N/A	unknown function
eggNOG-mapper	UHGV-1424532_27	78346.BRUM_0376	264.0	0	DNA binding	N/A
COG	UHGV-1424532_27	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1424532_27	PF05869,TIGR01712	N/A	N/A	N/A	N/A
PHROG	UHGV-1424532_28	phrog_119	59.4	5.2e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1424532_28	UniRef90_A0A2A7AM49	263.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1424532_28	610130.Closa_0739	104.0	1.46e-27	HNH nucleases	N/A
Pfam	UHGV-1424532_28	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1424532_28	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1424532_29	phrog_13845	63.9	1.9e-18	N/A	unknown function
eggNOG-mapper	UHGV-1424532_29	508419.F8J158_9CAUD	73.6	0.00000000000000319	N/A	N/A
Pfam	UHGV-1424532_29	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-1424532_29	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1424532_30	phrog_9	242.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-1424532_30	UniRef90_A0A2A7ALT4	1149.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1424532_30	1235792.C808_00083	630.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-1424532_30	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1424532_30	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1424532_30	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1424532_31	phrog_12	122.9	2.1e-36	portal protein	head and packaging
UniRef90	UHGV-1424532_31	UniRef90_A0A2A7AM75	817.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1424532_31	349161.Dred_2606	282.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-1424532_31	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1424532_31	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1424532_31	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1424532_31	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1424532_32	K01358	90.0	3.4e-26	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1424532_32	phrog_94	141.5	9.19952e-42	head maturation protease	head and packaging
UniRef90	UHGV-1424532_32	UniRef90_UPI001C10F40E	167.0	0	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-1424532_32	1232452.BAIB02000007_gene1626	156.0	1.4013e-44	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1424532_32	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1424532_32	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1424532_32	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1424532_33	phrog_10	142.1	5.29971e-42	major head protein	head and packaging
UniRef90	UHGV-1424532_33	UniRef90_A0A2A7AMP4	848.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1424532_33	1235792.C808_00086	457.0	0	Phage capsid family	N/A
Pfam	UHGV-1424532_33	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-1424532_33	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-1424532_33	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1424532_33	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1424532_33	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1424532_34	phrog_749	55.1	0.0000000000000011	N/A	unknown function
eggNOG-mapper	UHGV-1424532_34	349161.Dred_2603	90.1	4.49e-22	N/A	N/A
PHROG	UHGV-1424532_35	phrog_19734	93.4	2.1e-27	N/A	unknown function
UniRef90	UHGV-1424532_35	UniRef90_A0A0D8I708	89.0	3.03e-20	Phage head-tail joining protein	N/A
eggNOG-mapper	UHGV-1424532_35	349161.Dred_2602	80.1	1.44e-17	N/A	N/A
structural_annotation	UHGV-1424532_35	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1424532_36	999413.HMPREF1094_02005	79.0	1.19e-17	N/A	N/A
structural_annotation	UHGV-1424532_36	PF05657,COG3167	N/A	N/A	N/A	N/A
UniRef90	UHGV-1424532_37	UniRef90_A0A1C6FG30	117.0	1.77e-30	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-1424532_37	908340.HMPREF9406_2573	115.0	1.42e-30	N/A	N/A
structural_annotation	UHGV-1424532_37	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1424532_38	phrog_88	98.7	5.7e-29	major tail protein	tail
UniRef90	UHGV-1424532_38	UniRef90_UPI0018771F27	116.0	5.63e-29	phage tail protein	N/A
eggNOG-mapper	UHGV-1424532_38	349161.Dred_2600	63.2	0.00000000294	N/A	N/A
NCBIFam	UHGV-1424532_38	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1424532_38	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1424532_41	phrog_1686	74.2	1.2e-21	tail length tape measure protein	tail
UniRef90	UHGV-1424532_41	UniRef90_A0A2A7ALS3	1673.0	0	TMP_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1424532_41	1492737.FEM08_12070	157.0	1.73e-37	tape measure	N/A
Pfam	UHGV-1424532_41	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-1424532_41	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-1424532_41	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1424532_41	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1424532_42	phrog_33	97.7	1.9e-28	distal tail protein Dit	tail
UniRef90	UHGV-1424532_42	UniRef90_A0A173Z1X4	149.0	5.55993e-41	Phage-related protein	N/A
eggNOG-mapper	UHGV-1424532_42	439292.Bsel_2995	99.4	1.68e-22	tail component	N/A
COG	UHGV-1424532_42	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1424532_42	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1424532_43	phrog_1067	203.0	0	minor head protein	head and packaging
UniRef90	UHGV-1424532_43	UniRef90_A0A2A7AM44	1058.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1424532_43	1123263.AUKY01000068_gene489	203.0	0	Phage minor structural protein	N/A
Pfam	UHGV-1424532_43	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1424532_43	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1424532_43	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1424532_43	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1424532_47	NF040910	N/A	N/A	N/A	N/A
KOfam	UHGV-1424532_48	K07273	165.6	0	acm; lysozyme	N/A
PHROG	UHGV-1424532_48	phrog_291	137.7	9.90003e-41	endolysin	lysis
UniRef90	UHGV-1424532_48	UniRef90_UPI001D0EE7D8	254.0	0	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-1424532_48	748224.HMPREF9436_00154	249.0	0	hydrolase, family 25	N/A
Pfam	UHGV-1424532_48	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1424532_48	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1424532_48	PF01183,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-1424532_50	phrog_15303	85.6	4e-25	N/A	unknown function
eggNOG-mapper	UHGV-1424532_52	1235798.C817_04600	58.9	0.000000000843	N/A	N/A
Pfam	UHGV-1424532_52	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1424532_52	PF13560,NF040522	N/A	N/A	N/A	N/A
UniRef90	UHGV-1424532_54	UniRef90_UPI0004C44073	63.5	0.000000000593	helix-turn-helix domain-containing protein	N/A
UniRef90	UHGV-1424532_56	UniRef90_A0A1Y3R5J8	51.6	0.000000227	RHH_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-1424532_56	1160721.RBI_I00206	60.1	0.0000000000178	N/A	N/A
structural_annotation	UHGV-1424532_56	PF10723	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1424532	Yes	35,910	54	89	1
UHGV-0057715	No	23,211	55	57	1
UHGV-1423163	No	23,211	55	57	1